AlfalfaGEDB | MsaG006861

M. sativa ssp. caerulea / MsaG006861

KEGG: K11654
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009987 GO:0016043 GO:0016584 GO:0022607 GO:0031497 GO:0032501 GO:0032502 GO:0034728 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0048229 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051276 GO:0065007 GO:0071103 GO:0071824 GO:0071840 GO:0080134 GO:0080135 GO:1900034 GO:1900036
PFAM: PF13892.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006861	XP_039686239.1	95.149	1072	14	3	1	1041	1	1065	0.0	2086

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006861	sp\|Q8RWY3\|ISW2_ARATH	87.611	1009	98	6	40	1027	50	1052	0.0	1766

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006861	tr\|G7ISH3\|G7ISH3_MEDTR	95.061	1073	14	4	1	1041	1	1066	0.0	2081

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TFs/TRs:

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Gene ID	Type	Classification
MsaG006861	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000802	MsaG006861	0.837232	1.075963e-56	3.854263e-54
MsaG001479	MsaG006861	0.840188	1.868328e-57	7.336506e-55
MsaG003749	MsaG006861	0.809820	2.676302e-50	4.550600e-48
MsaG004217	MsaG006861	0.800160	2.744160e-48	3.723580e-46
MsaG004507	MsaG006861	0.826730	4.117875e-54	1.086747e-51
MsaG004822	MsaG006861	0.818687	3.004743e-52	6.383979e-50
MsaG005020	MsaG006861	0.820034	1.486340e-52	3.272045e-50
MsaG005477	MsaG006861	0.814059	3.225037e-51	6.088291e-49
MsaG005577	MsaG006861	0.811776	1.014800e-50	1.809873e-48
MsaG005958	MsaG006861	0.811035	1.467258e-50	2.569739e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006861	MtrunA17_Chr2g0286291	95.061	1073	14	4	1	1041	1	1066	0.0	2081
MsaG006861	MtrunA17_Chr4g0066741	90.040	994	91	4	50	1041	76	1063	0.0	1821
MsaG006861	MtrunA17_Chr1g0205891	46.869	527	259	9	149	660	363	883	2.51e-160	502
MsaG006861	MtrunA17_Chr5g0394201	47.059	527	257	9	149	660	350	869	6.29e-159	498
MsaG006861	MtrunA17_Chr5g0403921	45.741	540	253	10	154	659	177	710	4.07e-152	470
MsaG006861	MtrunA17_Chr3g0095091	45.338	547	263	10	149	661	558	1102	1.49e-147	481
MsaG006861	MtrunA17_Chr5g0442141	47.399	519	243	8	149	639	604	1120	7.39e-145	474
MsaG006861	MtrunA17_Chr4g0066651	48.971	486	225	8	150	614	977	1460	7.89e-139	462
MsaG006861	MtrunA17_Chr7g0232121	38.776	588	311	15	157	700	35	617	5.88e-118	384
MsaG006861	MtrunA17_Chr4g0052341	40.585	547	288	12	150	673	733	1265	2.93e-111	381

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006861	AT3G06400.2	87.611	1009	98	6	40	1027	50	1052	0.0	1766
MsaG006861	AT5G18620.2	83.996	1081	124	9	1	1041	1	1072	0.0	1765
MsaG006861	AT3G06400.1	87.512	1009	98	7	40	1027	50	1051	0.0	1760
MsaG006861	AT5G18620.1	83.904	1081	122	10	1	1041	1	1069	0.0	1757
MsaG006861	AT3G06400.3	87.339	1011	98	8	40	1027	50	1053	0.0	1756
MsaG006861	AT5G19310.2	48.000	525	255	9	149	660	109	628	4.44e-162	498
MsaG006861	AT3G06010.1	48.197	527	252	10	149	660	390	910	1.61e-159	501
MsaG006861	AT5G19310.1	48.000	525	255	9	149	660	373	892	6.77e-159	498
MsaG006861	AT2G13370.1	45.672	543	264	8	149	661	612	1153	7.89e-147	480
MsaG006861	AT2G13370.2	45.672	543	264	8	149	661	612	1153	7.89e-147	480

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Find 229 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAGAATACGATGAG+AGG	0.596156	2:-10846798	MsaT006861.1:CDS
AAAAGAAACCATTCTTAAAG+TGG	0.474223	2:-10850034	MsaT006861.1:CDS
AAACCAAGAATACGATGAGA+GGG	0.613365	2:-10846797	MsaT006861.1:CDS
AAACCAATCAAATCTAAACA+AGG	0.624018	2:+10846888	None:intergenic
AAAGAAACCATTCTTAAAGT+GGG	0.566006	2:-10850033	MsaT006861.1:CDS
AAAGCTTGCACTTGATGCTT+TGG	0.383951	2:-10849020	MsaT006861.1:CDS
AAAGGAAGTACGCTATCTCA+TGG	0.596145	2:-10848031	MsaT006861.1:intron
AAAGGAGCGCCTGCTAGAAG+AGG	0.614957	2:-10847740	MsaT006861.1:intron
AAATGGAATAAATGGAATTC+TGG	0.335855	2:-10851768	MsaT006861.1:CDS
AAATGTGATTTGCAGGGGCT+TGG	0.393528	2:-10851581	MsaT006861.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	10846461	10854472	10846461	ID=MsaG006861
Chr2	mRNA	10846461	10854472	10846461	ID=MsaT006861.1;Parent=MsaG006861
Chr2	exon	10846461	10846478	10846461	ID=MsaT006861.1.exon25;Parent=MsaT006861.1
Chr2	CDS	10846461	10846478	10846461	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10846576	10846690	10846576	ID=MsaT006861.1.exon24;Parent=MsaT006861.1
Chr2	CDS	10846576	10846690	10846576	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10846760	10846977	10846760	ID=MsaT006861.1.exon23;Parent=MsaT006861.1
Chr2	CDS	10846760	10846977	10846760	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10847063	10847241	10847063	ID=MsaT006861.1.exon22;Parent=MsaT006861.1
Chr2	CDS	10847063	10847241	10847063	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10847498	10847663	10847498	ID=MsaT006861.1.exon21;Parent=MsaT006861.1
Chr2	CDS	10847498	10847663	10847498	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10847741	10847799	10847741	ID=MsaT006861.1.exon20;Parent=MsaT006861.1
Chr2	CDS	10847741	10847799	10847741	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10847885	10847939	10847885	ID=MsaT006861.1.exon19;Parent=MsaT006861.1
Chr2	CDS	10847885	10847939	10847885	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10848032	10848101	10848032	ID=MsaT006861.1.exon18;Parent=MsaT006861.1
Chr2	CDS	10848032	10848101	10848032	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10848179	10848268	10848179	ID=MsaT006861.1.exon17;Parent=MsaT006861.1
Chr2	CDS	10848179	10848268	10848179	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10848354	10848430	10848354	ID=MsaT006861.1.exon16;Parent=MsaT006861.1
Chr2	CDS	10848354	10848430	10848354	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10848551	10848579	10848551	ID=MsaT006861.1.exon15;Parent=MsaT006861.1
Chr2	CDS	10848551	10848579	10848551	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10848705	10848893	10848705	ID=MsaT006861.1.exon14;Parent=MsaT006861.1
Chr2	CDS	10848705	10848893	10848705	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10848987	10849080	10848987	ID=MsaT006861.1.exon13;Parent=MsaT006861.1
Chr2	CDS	10848987	10849080	10848987	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10849162	10849249	10849162	ID=MsaT006861.1.exon12;Parent=MsaT006861.1
Chr2	CDS	10849162	10849249	10849162	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10849344	10849564	10849344	ID=MsaT006861.1.exon11;Parent=MsaT006861.1
Chr2	CDS	10849344	10849564	10849344	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10849671	10849744	10849671	ID=MsaT006861.1.exon10;Parent=MsaT006861.1
Chr2	CDS	10849671	10849744	10849671	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10849836	10850118	10849836	ID=MsaT006861.1.exon9;Parent=MsaT006861.1
Chr2	CDS	10849836	10850118	10849836	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10850203	10850337	10850203	ID=MsaT006861.1.exon8;Parent=MsaT006861.1
Chr2	CDS	10850203	10850337	10850203	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10851091	10851312	10851091	ID=MsaT006861.1.exon7;Parent=MsaT006861.1
Chr2	CDS	10851091	10851312	10851091	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10851409	10851588	10851409	ID=MsaT006861.1.exon6;Parent=MsaT006861.1
Chr2	CDS	10851409	10851588	10851409	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10851757	10851854	10851757	ID=MsaT006861.1.exon5;Parent=MsaT006861.1
Chr2	CDS	10851757	10851854	10851757	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10852232	10852335	10852232	ID=MsaT006861.1.exon4;Parent=MsaT006861.1
Chr2	CDS	10852232	10852335	10852232	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10853518	10853621	10853518	ID=MsaT006861.1.exon3;Parent=MsaT006861.1
Chr2	CDS	10853518	10853621	10853518	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10853716	10853838	10853716	ID=MsaT006861.1.exon2;Parent=MsaT006861.1
Chr2	CDS	10853716	10853838	10853716	ID=cds.MsaT006861.1;Parent=MsaT006861.1
Chr2	exon	10854338	10854472	10854338	ID=MsaT006861.1.exon1;Parent=MsaT006861.1
Chr2	CDS	10854338	10854472	10854338	ID=cds.MsaT006861.1;Parent=MsaT006861.1

Gene Sequence

>MsaT006861.1

ATGGCGAAACTGTCCAAGCAACAACCTTCTTCCGACGAAGAACCGGTGAACTCTTCGTCGGAGGAAGAAGAGCAAGTTAATGAGCAGATCAACGAAGAAGAAGATCAAGAGGAGTTGGAAGCTGTTGCTCGTGCTGGAGAAGGTGCTCCTGAAATAAGCAAACATGAGAAGGCGAGATTGCGAGAAATGCAAAAAATGAAGAAACAGAAAGTTCAGGAGATATTAGATGCTCAAAATGCGGCCATTGAAGCTGACATGAATAACAGAGGAAAGGGGCGGTTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCCCATTTTGCGAAAGGTGACCAATCATCTCAAAAGAAGTCAAAAGGAAGTGGTCGCCATGCGTCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTACCTGAAAGGAGAAGAAGACGGTGTTTCAAACACTCGTCTGGTGACACAGCCATCATGTATTCAAGGGAAGATGAGGGATTACCAATTGGCTGGACTGAACTGGCTCATTCGATTGTATGAAAATGGAATAAATGGAATTCTGGCCGATGAGATGGGGCTTGGTAAAACATTGCAAACTATATCTTTAATGGGCTACTTGCATGAGTTCAGAGGAATTAAAGGCCCTCATATGGTGGTTGCCCCAAAATCAACTCTTGGAAATTGGATGAATGAGATTCGTCGCTTTTGTCCTATTCTGCGTGCTGTAAAATTCCTTGGCAACCCTGAAGAAAGGAGACATATAAGAGAGGACTTATTAGTTGCTGGAAAGTTTGACGTTTGTGTTACAAGTTTTGAAATGGCTATCAAGGAGAAGTCTACTTTACGTCGATTTAGTTGGCGCTACATAATTATCGATGAAGCTCATAGAATCAAGAACGAGAATTCCTTGCTCTCTAAAACAATGAGGATTTACAATACAAACTATCGCCTCCTTATCACTGGTACACCGCTTCAGAATAATCTTCATGAACTTTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACCTTCGATGAGTGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTGCAGCAATTACACAAGGTCCTCCGGCCATTTCTTCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAAGAAACCATTCTTAAAGTGGGCATGTCACAATTGCAGAAACAATATTATAAAGCATTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGCCTCCTGAATATAGCTATGCAACTGCGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCTTATACAACAGGAGATCATCTCATTACCAGTGCTGGTAAAATGGTTCTTTTGGATAAGTTGCTTCCTAAATTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTGATGTTCCGTGGATATCAATATTGTCGCATAGATGGCAATACTGGTGGGGATGATCGTGATGCCTCCATTGATGCTTTCAACAAACCGGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGACGTCGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAAGATCGTGCCCATAGGATAGGTCAGAAGAAAGAAGTTCAAGTTTTCCGTTTTTGCACCGAGTATACGATTGAGGAGAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAACAGGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTACTTCAAATGGTTAGATTTGGAGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACTGATGAGGATATTGATAGAATTATTGCCAAAGGAGAAGAGGCAACTGCAGAGCTTGATGCCAAGATGAAGAAATTTACAGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGAGTTATACGATTTTGATGATAAGGATGAGAACAAGTTTGATTTCAAAAAAATTGTGAGTGAAAACTGGGTTGAACCAACAAGAAGGGAGCGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAGCAAACCATGCGGCAAGGTGGTCCTTCTAAACCAAAGGAGCCCCGCATTCCTAGGATGCCACAGTTGCATGATTTCCAGTTTTTCAACACACCGAGATTGAGTGAGTTGTATGAAAAGGAAGTACGCTATCTCATGCAAACCCATCAGAAGAATCAGGTAAAGGACTCGATAGATGTTGATGAACCAGAAGAGGTAGGAGATCAATTGACCGCTGAAGAGATGGAAGAAAAGGAGCGCCTGCTAGAAGAGGGATTTTCATCATGGAGCCGAAAAGATTTTAACACCTTCCTCAGGGCCTGTGAGAAATATGGTCGAAATGATATACAAAGTATTGCCTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATCAAAAACATCGAGAGGGGGGAGGCTAGAATTTCTCGGAAGGATGAGATCATGAAAGCTATCGGAAAGAAATTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGGTACAGTATGGGCAAAACAAAGGGAAGCTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTGAAGGCAGCGTTTCGAACATCACCCTTGTTTAGATTTGATTGGTTTGTCAAGTCTCGCACAACACAAGAACTTGCAAGGAGGTGCGACACCCTCATTCGGTTGGTAGAAAAGGAAAACCAAGAATACGATGAGAGGGAGAGACAAGCTCAAAGAGAAGAAACTTGCCAAGGTTATTTTACAATATTTCAGAACATGACTCCGACAAAGCGGGCTTTGGCAAGACAAACTGAGAGTCCATCTTCTGCTAAGAAGCGGAAGCAGTCAACCACAGATGATTATGCTAGCACGGGGAAGAGGAGAAAATAA

Protein sequence

>MsaT006861.1

MAKLSKQQPSSDEEPVNSSSEEEEQVNEQINEEEDQEELEAVARAGEGAPEISKHEKARLREMQKMKKQKVQEILDAQNAAIEADMNNRGKGRLKYLLQQTELFAHFAKGDQSSQKKSKGSGRHASKVTEEEEDEEYLKGEEDGVSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREDLLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDKDENKFDFKKIVSENWVEPTRRERKRNYSESEYFKQTMRQGGPSKPKEPRIPRMPQLHDFQFFNTPRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEEVGDQLTAEEMEEKERLLEEGFSSWSRKDFNTFLRACEKYGRNDIQSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKVQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQAQREETCQGYFTIFQNMTPTKRALARQTESPSSAKKRKQSTTDDYASTGKRRK*