AlfalfaGEDB | MsaG006877

M. sativa ssp. caerulea / MsaG006877

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0008150 GO:0008289 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00646.36

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006877	XP_003594006.1	81.723	383	33	3	1	347	1	382	0.0	620

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006877	sp\|Q8VY21\|TLP3_ARATH	64.134	329	81	4	12	308	30	353	1.76e-151	435

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006877	tr\|G7ISK0\|G7ISK0_MEDTR	81.723	383	33	3	1	347	1	382	0.0	620

TFs/TRs:

Gene ID	Type	Classification
MsaG006877	TF	TUB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000309	MsaG006877	0.821456	7.027971e-53	1.606402e-50
MsaG000450	MsaG006877	0.800457	2.388299e-48	3.262708e-46
MsaG000534	MsaG006877	0.832444	1.704218e-55	5.293175e-53
MsaG000662	MsaG006877	0.836148	2.026589e-56	7.026297e-54
MsaG000760	MsaG006877	0.801933	1.195634e-48	1.688839e-46
MsaG000880	MsaG006877	0.811269	1.306252e-50	2.300930e-48
MsaG001238	MsaG006877	0.810137	2.288455e-50	3.921062e-48
MsaG001278	MsaG006877	0.813906	3.482827e-51	6.550204e-49
MsaG001366	MsaG006877	0.817043	7.034071e-52	1.432484e-49
MsaG001403	MsaG006877	0.802265	1.022359e-48	1.455077e-46
MsaG001991	MsaG006877	0.824863	1.136571e-53	2.848350e-51
MsaG002889	MsaG006877	0.803803	4.934821e-49	7.276578e-47
MsaG003141	MsaG006877	0.804716	3.191501e-49	4.806631e-47
MsaG003188	MsaG006877	0.815459	1.584024e-51	3.097813e-49
MsaG003529	MsaG006877	0.808720	4.594045e-50	7.607306e-48
MsaG004041	MsaG006877	0.825810	6.801070e-54	1.749543e-51
MsaG004806	MsaG006877	0.843346	2.766584e-58	1.201252e-55
MsaG005201	MsaG006877	0.808609	4.850998e-50	8.010800e-48
MsaG005217	MsaG006877	0.809130	3.757101e-50	6.282958e-48
MsaG005957	MsaG006877	0.815756	1.360740e-51	2.681271e-49
MsaG006165	MsaG006877	0.865421	1.195719e-64	1.148803e-61
MsaG006249	MsaG006877	0.830470	5.188735e-55	1.521908e-52
MsaG006877	MsaG007072	0.808954	4.097701e-50	6.823359e-48
MsaG006877	MsaG007950	0.811941	9.343239e-51	1.673207e-48
MsaG006877	MsaG008035	0.810724	1.712116e-50	2.975823e-48
MsaG006877	MsaG008079	0.801710	1.327947e-48	1.866224e-46
MsaG006877	MsaG008712	0.809457	3.199226e-50	5.392530e-48
MsaG006877	MsaG009230	0.812831	5.986633e-51	1.095958e-48
MsaG006877	MsaG009859	0.813764	3.742465e-51	7.013324e-49
MsaG006877	MsaG010062	0.821771	5.950692e-53	1.371567e-50
MsaG006877	MsaG010466	0.804100	4.282439e-49	6.358668e-47
MsaG006877	MsaG010678	0.851312	1.840639e-60	1.043765e-57
MsaG006877	MsaG011405	0.820495	1.166795e-52	2.600061e-50
MsaG006877	MsaG011580	0.807292	9.220544e-50	1.475234e-47
MsaG006877	MsaG011824	0.803169	6.668996e-49	9.690700e-47
MsaG006877	MsaG012117	0.800676	2.156744e-48	2.960965e-46
MsaG006877	MsaG012226	0.828678	1.409032e-54	3.927054e-52
MsaG006877	MsaG012348	0.811812	9.964715e-51	1.778832e-48
MsaG006877	MsaG012290	0.808362	5.472799e-50	8.984030e-48
MsaG006877	MsaG012553	0.801091	1.775647e-48	2.460600e-46
MsaG006877	MsaG015143	0.841550	8.239293e-58	3.377590e-55
MsaG006877	MsaG015807	0.850188	3.800666e-60	2.072998e-57
MsaG006877	MsaG015813	0.808046	6.387770e-50	1.040681e-47
MsaG006877	MsaG016078	0.821815	5.811251e-53	1.341012e-50
MsaG006877	MsaG016352	0.840965	1.172453e-57	4.717785e-55
MsaG006877	MsaG016862	0.804458	3.610624e-49	5.405423e-47
MsaG006877	MsaG017259	0.842371	5.011681e-58	2.109078e-55
MsaG006877	MsaG017672	0.841430	8.855950e-58	3.616608e-55
MsaG006877	MsaG018103	0.801964	1.178489e-48	1.665787e-46
MsaG006877	MsaG018135	0.810629	1.794230e-50	3.111378e-48
MsaG006877	MsaG018212	0.818176	3.916620e-52	8.212261e-50
MsaG006877	MsaG018808	0.802968	7.334097e-49	1.060771e-46
MsaG006877	MsaG018902	0.817831	4.684142e-52	9.734375e-50
MsaG006877	MsaG018909	0.829825	7.445888e-55	2.144097e-52
MsaG006877	MsaG019191	0.835047	3.837970e-56	1.287390e-53
MsaG006877	MsaG019297	0.813253	4.840435e-51	8.955342e-49
MsaG006877	MsaG020391	0.801126	1.746915e-48	2.422716e-46
MsaG006877	MsaG020645	0.837391	9.797064e-57	3.526851e-54
MsaG006877	MsaG020787	0.801375	1.554490e-48	2.168049e-46
MsaG006877	MsaG021311	0.816510	9.251231e-52	1.858232e-49
MsaG006877	MsaG021485	0.801330	1.587210e-48	2.211487e-46
MsaG006877	MsaG022494	0.813472	4.335310e-51	8.065042e-49
MsaG006877	MsaG022714	0.806639	1.265541e-49	1.993890e-47
MsaG006877	MsaG023205	0.846424	4.123383e-59	1.980504e-56
MsaG006877	MsaG023396	0.801385	1.547050e-48	2.158175e-46
MsaG006877	MsaG023570	0.804658	3.280497e-49	4.934060e-47
MsaG006877	MsaG024009	0.811361	1.247615e-50	2.202587e-48
MsaG006877	MsaG025492	0.816569	8.975250e-52	1.805553e-49
MsaG006877	MsaG026734	0.805315	2.394762e-49	3.657257e-47
MsaG006877	MsaG027027	0.833135	1.149860e-55	3.644606e-53
MsaG006877	MsaG027749	0.810738	1.700231e-50	2.956206e-48
MsaG006877	MsaG027897	0.835209	3.494875e-56	1.177967e-53
MsaG006877	MsaG028020	0.810841	1.615517e-50	2.816002e-48
MsaG006877	MsaG028091	0.837090	1.169180e-56	4.170342e-54
MsaG006877	MsaG028286	0.804342	3.816778e-49	5.698855e-47
MsaG006877	MsaG028487	0.835034	3.865840e-56	1.296282e-53
MsaG006877	MsaG028713	0.811723	1.041923e-50	1.855831e-48
MsaG006877	MsaG028937	0.813945	3.416031e-51	6.430736e-49
MsaG006877	MsaG029194	0.808117	6.170403e-50	1.006977e-47
MsaG006877	MsaG029232	0.820948	9.194626e-53	2.073663e-50
MsaG006877	MsaG029626	0.806611	1.282554e-49	2.019428e-47
MsaG006877	MsaG032101	0.824911	1.107634e-53	2.779502e-51
MsaG006877	MsaG033134	0.808828	4.358727e-50	7.236045e-48
MsaG006877	MsaG034444	0.834830	4.348953e-56	1.449390e-53
MsaG006877	MsaG034605	0.844998	1.001408e-58	4.589035e-56
MsaG006877	MsaG034633	0.801086	1.779994e-48	2.466338e-46
MsaG006877	MsaG035051	0.813733	3.802182e-51	7.119529e-49
MsaG006877	MsaG035152	0.809883	2.594404e-50	4.418005e-48
MsaG006877	MsaG035154	0.804266	3.957768e-49	5.899031e-47
MsaG006877	MsaG035439	0.807480	8.416258e-50	1.352618e-47
MsaG006877	MsaG035749	0.811730	1.037948e-50	1.849109e-48
MsaG006877	MsaG039418	0.830713	4.528513e-55	1.337525e-52
MsaG006877	MsaG039760	0.825840	6.689679e-54	1.722352e-51
MsaG006877	MsaG040578	0.801016	1.839475e-48	2.544750e-46
MsaG006877	MsaG042142	0.807811	7.164325e-50	1.160616e-47
MsaG006877	MsaG042898	0.803974	4.548929e-49	6.734325e-47
MsaG006877	MsaG043414	0.824797	1.177539e-53	2.945690e-51
MsaG006877	MsaG043506	0.859546	7.528538e-63	5.752942e-60
MsaG006877	MsaG043881	0.807446	8.553285e-50	1.373559e-47
MsaG006877	MsaG044333	0.815510	1.543271e-51	3.021964e-49
MsaG006877	MsaG044390	0.809432	3.238744e-50	5.455694e-48
MsaG006877	MsaG045345	0.806431	1.399118e-49	2.193624e-47
MsaG006877	MsaG045392	0.801439	1.508565e-48	2.107064e-46
MsaG006877	MsaG045576	0.803684	5.221745e-49	7.678591e-47
MsaG006877	MsaG045807	0.812507	7.040003e-51	1.278513e-48
MsaG006877	MsaG045984	0.806503	1.350989e-49	2.121741e-47
MsaG006877	MsaG046004	0.804616	3.347315e-49	5.029646e-47
MsaG006877	MsaG046214	0.815946	1.235375e-51	2.446047e-49
MsaG006877	MsaG046470	0.839469	2.869145e-57	1.101580e-54
MsaG006877	MsaG047152	0.817531	5.468994e-52	1.127791e-49
MsaG006877	MsaG007338	0.830942	3.981429e-55	1.183741e-52
MsaG006877	MsaG011182	0.810710	1.723305e-50	2.994309e-48
MsaG006877	MsaG007871	0.811353	1.252747e-50	2.211194e-48
MsaG006877	MsaG008766	0.804016	4.458458e-49	6.606944e-47
MsaG006877	MsaG013872	0.820494	1.167579e-52	2.601718e-50
MsaG006877	MsaG016152	0.847004	2.869080e-59	1.405130e-56
MsaG006877	MsaG011633	0.826852	3.851270e-54	1.019855e-51
MsaG006877	MsaG021945	0.821906	5.538229e-53	1.281119e-50
MsaG006877	MsaG024279	0.804138	4.205256e-49	6.249410e-47
MsaG006877	MsaG027643	0.836693	1.475129e-56	5.198678e-54
MsaG006877	MsaG028385	0.800696	2.136036e-48	2.933923e-46
MsaG006877	MsaG027790	0.815479	1.567597e-51	3.067199e-49
MsaG006877	MsaG033161	0.800270	2.606618e-48	3.545787e-46
MsaG006877	MsaG031107	0.825841	6.686286e-54	1.721532e-51
MsaG006877	MsaG031649	0.802940	7.433082e-49	1.074404e-46
MsaG006877	MsaG033182	0.857688	2.684198e-62	1.913122e-59
MsaG006877	MsaG034183	0.833191	1.113663e-55	3.535604e-53
MsaG006877	MsaG032866	0.811599	1.108444e-50	1.968350e-48
MsaG006877	MsaG031699	0.838599	4.808921e-57	1.796884e-54
MsaG006877	MsaG038711	0.813922	3.455955e-51	6.502121e-49
MsaG006877	MsaG037513	0.800833	2.003452e-48	2.760224e-46
MsaG006877	MsaG042078	0.843920	1.945045e-58	8.602033e-56

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006877	MtrunA17_Chr2g0286441	81.723	383	33	3	1	347	1	382	0.0	620
MsaG006877	MtrunA17_Chr1g0196071	58.133	375	115	6	11	347	21	391	1.11e-148	425
MsaG006877	MtrunA17_Chr1g0201891	53.651	315	104	4	34	306	48	362	2.33e-113	336
MsaG006877	MtrunA17_Chr2g0278511	52.174	322	107	5	34	310	49	368	1.89e-112	333
MsaG006877	MtrunA17_Chr2g0315641	54.098	305	130	4	16	313	20	321	3.72e-111	328
MsaG006877	MtrunA17_Chr5g0404321	51.911	314	114	2	32	308	48	361	4.41e-111	330
MsaG006877	MtrunA17_Chr8g0373001	52.885	312	112	2	32	308	46	357	8.58e-108	321
MsaG006877	MtrunA17_Chr1g0155301	54.125	303	111	3	39	313	70	372	2.53e-106	318
MsaG006877	MtrunA17_Chr2g0315651	48.592	284	134	5	39	313	37	317	2.02e-83	257
MsaG006877	MtrunA17_Chr8g0373361	37.396	361	171	10	32	347	51	401	4.90e-67	216
MsaG006877	MtrunA17_Chr1g0156151	58.904	146	56	1	54	195	66	211	1.37e-53	176
MsaG006877	MtrunA17_Chr8g0373331	35.570	298	124	7	32	306	45	297	1.36e-48	167
MsaG006877	MtrunA17_Chr8g0373341	37.631	287	98	9	39	307	50	273	1.08e-38	140
MsaG006877	MtrunA17_Chr8g0373351	34.413	247	87	8	87	308	43	239	7.21e-26	105
MsaG006877	MtrunA17_Chr3g0091401	42.268	97	50	1	82	178	9	99	2.09e-15	71.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006877	AT2G47900.2	64.134	329	81	4	12	308	30	353	1.78e-152	435
MsaG006877	AT2G47900.1	64.134	329	81	4	12	308	30	353	1.78e-152	435
MsaG006877	AT2G47900.3	63.939	330	81	4	12	308	30	354	2.15e-152	435
MsaG006877	AT3G06380.1	53.050	377	134	8	4	347	3	369	5.35e-131	379
MsaG006877	AT5G18680.1	52.632	380	140	8	4	347	3	378	9.35e-129	374
MsaG006877	AT2G18280.2	50.867	346	136	6	32	347	41	382	2.07e-110	328
MsaG006877	AT2G18280.1	50.867	346	136	6	32	347	41	382	2.07e-110	328
MsaG006877	AT1G76900.2	48.725	353	115	7	17	308	37	384	4.09e-109	327
MsaG006877	AT1G76900.1	48.725	353	115	7	17	308	37	384	4.09e-109	327
MsaG006877	AT1G76900.3	48.725	353	115	7	17	308	37	384	4.09e-109	327
MsaG006877	AT1G43640.1	47.130	331	139	5	14	312	34	360	1.80e-106	319
MsaG006877	AT1G53320.1	49.379	322	152	2	3	313	8	329	2.62e-104	311
MsaG006877	AT1G47270.3	47.429	350	141	7	32	347	37	377	1.89e-102	307
MsaG006877	AT1G47270.1	47.429	350	141	7	32	347	62	402	4.26e-102	307
MsaG006877	AT1G47270.2	47.429	350	141	7	32	347	61	401	4.92e-102	307
MsaG006877	AT1G43640.2	48.973	292	117	4	53	312	3	294	2.16e-99	298
MsaG006877	AT5G18680.2	52.941	289	98	6	93	347	2	286	3.74e-95	285
MsaG006877	AT3G06380.2	53.957	278	91	6	102	347	5	277	4.92e-93	280
MsaG006877	AT1G25280.1	44.063	379	140	7	4	310	3	381	1.98e-90	278
MsaG006877	AT1G25280.3	43.350	203	65	3	158	310	1	203	4.49e-44	153
MsaG006877	AT1G25280.2	43.350	203	65	3	158	310	1	203	4.49e-44	153
MsaG006877	AT1G61940.2	68.605	86	27	0	42	127	1	86	2.68e-36	132
MsaG006877	AT1G61940.1	70.492	61	18	0	42	102	1	61	2.03e-22	95.1

Find 93 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGATCATAGCTGAAATTTC+AGG	0.195471	2:+11029791	None:intergenic
GACAAGATTATTCTGCAATT+TGG	0.212541	2:-11026744	MsaT006877.1:CDS
ATACCCTATTTCGGCATTTC+AGG	0.216986	2:-11026685	MsaT006877.1:CDS
AATGCCTGAAATGCCGAAAT+AGG	0.239475	2:+11026681	None:intergenic
TGGCGGTTGGCGACAGTTTA+CGG	0.281341	2:-11029970	MsaT006877.1:CDS
GAAAACCTGTTTAACAGAAA+TGG	0.297610	2:+11029763	None:intergenic
GCTGGTGGCTTCCGAGAAAA+TGG	0.312186	2:-11026785	MsaT006877.1:CDS
AAAACCTGTTTAACAGAAAT+GGG	0.345752	2:+11029764	None:intergenic
ATTCTGCAATTTGGAAAAGT+TGG	0.358632	2:-11026735	MsaT006877.1:CDS
TTTCCCCATTTCTGTTAAAC+AGG	0.366547	2:-11029768	MsaT006877.1:intron
GGATTTCCGATACCCTATTT+CGG	0.372729	2:-11026694	MsaT006877.1:CDS
AGTAGTGGTGGTGGCGGAGA+AGG	0.373376	2:-11030002	MsaT006877.1:CDS
TCCTTAAGATCAAATTTCCT+TGG	0.391394	2:-11027682	MsaT006877.1:intron
AACATAGTTGTTGCTTCCCC+TGG	0.398674	2:+11027808	None:intergenic
TAGTTGCCTGTTGGGACCTT+GGG	0.403395	2:+11027562	None:intergenic
CAGAATAATCTTGTCGTGTT+CGG	0.408007	2:+11026752	None:intergenic
ACAGTTTACGGCAGAGTTGT+TGG	0.415866	2:-11029958	MsaT006877.1:CDS
TTCTGCAATTTGGAAAAGTT+GGG	0.417811	2:-11026734	MsaT006877.1:CDS
TCTCTATCCGGACCTCTTGT+TGG	0.419329	2:-11026928	MsaT006877.1:CDS
TGATGACGGGAAGTTCCTTC+TGG	0.420704	2:-11027897	MsaT006877.1:CDS
ATAGTTGCCTGTTGGGACCT+TGG	0.425411	2:+11027561	None:intergenic
TTACTAAAAGTCGTTCTACT+AGG	0.428715	2:-11027609	MsaT006877.1:CDS
CCACTGGATAGTTGCCTGTT+GGG	0.432338	2:+11027554	None:intergenic
CAGTTTACGGCAGAGTTGTT+GGG	0.438166	2:-11029957	MsaT006877.1:CDS
ATGCCTGAAATGCCGAAATA+GGG	0.443678	2:+11026682	None:intergenic
AAGAACGTTGTTGCGTGTGC+TGG	0.445764	2:-11029860	MsaT006877.1:CDS
TTGCTCCTGCATGAGGTGGC+TGG	0.453181	2:+11027635	None:intergenic
GGCATGAGCAGCTGCAGTGT+TGG	0.476628	2:-11026858	MsaT006877.1:CDS
GGGGAAGCAACAACTATGTT+GGG	0.477342	2:-11027805	MsaT006877.1:CDS
GTTTCACCCAAGGTCCCAAC+AGG	0.477369	2:-11027568	MsaT006877.1:CDS
TGCGCTTTATAAAGCATTGA+AGG	0.484376	2:+11028082	None:intergenic
AGGAGATTCTCCCTTGGACC+AGG	0.489762	2:+11028102	None:intergenic
AATAATATGTTTGAGTGGAC+CGG	0.492380	2:+11028058	None:intergenic
TCTTCTCCGAATTGAGGCCT+CGG	0.497256	2:-11029903	MsaT006877.1:CDS
AATGCTTTATAAAGCGCAAC+CGG	0.499079	2:-11028077	MsaT006877.1:CDS
TGAAGTTCTTCTCCGAATTG+AGG	0.501294	2:-11029909	MsaT006877.1:CDS
TGGGAAGGATTTGTTTACAA+TGG	0.502527	2:-11026715	MsaT006877.1:CDS
GACGGCCAGCCACCTCATGC+AGG	0.508409	2:-11027640	MsaT006877.1:CDS
AGGGGAAGCAACAACTATGT+TGG	0.508852	2:-11027806	MsaT006877.1:CDS
TTCCGAGAAAATGGAACAGC+TGG	0.510258	2:-11026776	MsaT006877.1:CDS
TTTATCGCCAACAAGAGGTC+CGG	0.512577	2:+11026921	None:intergenic
TAAAAGTCGTTCTACTAGGT+TGG	0.514151	2:-11027605	MsaT006877.1:CDS
TGCAGCTGCTCATGCCACCT+CGG	0.519909	2:+11026865	None:intergenic
AATTAAATGTGCTAGGCTCT+AGG	0.520129	2:-11027516	MsaT006877.1:intron
ACAACTATGTTGGGAAATTG+AGG	0.521031	2:-11027796	MsaT006877.1:intron
TAGACGCAGATGATATGTCC+AGG	0.522084	2:-11027826	MsaT006877.1:CDS
ATGACACAGTGCATTCTCCT+TGG	0.528561	2:+11027082	None:intergenic
TAGGTTGGTGAATCTAAAGC+AGG	0.531070	2:-11027590	MsaT006877.1:CDS
TCATGTCTTCGATTATGTTG+CGG	0.535725	2:+11030041	None:intergenic
TTCGATTGAAGAGGATGGAA+TGG	0.537253	2:+11027054	None:intergenic
AGATAGTGAACTTTGTTCCA+AGG	0.538026	2:+11027665	None:intergenic
GTGGGAGAGAACTCTCTATC+CGG	0.538392	2:-11026940	MsaT006877.1:intron
TGTCCTCCGAGGCCTCAATT+CGG	0.540412	2:+11029897	None:intergenic
ATTCAGCGCTAGGTGATGAC+GGG	0.542238	2:-11027910	MsaT006877.1:intron
AATTCAGCGCTAGGTGATGA+CGG	0.546541	2:-11027911	MsaT006877.1:intron
AAGGAGAATGCACTGTGTCA+TGG	0.546764	2:-11027080	MsaT006877.1:CDS
ATGATATAATCTGTGCATGT+AGG	0.547626	2:+11027854	None:intergenic
GCCACTGGATAGTTGCCTGT+TGG	0.548446	2:+11027553	None:intergenic
TCATATGAGATGTGAGCCAC+TGG	0.549162	2:+11027538	None:intergenic
GCAATTTGGAAAAGTTGGGA+AGG	0.553649	2:-11026730	MsaT006877.1:CDS
ACTTCACGCAGAAGCTCTTG+TGG	0.562675	2:+11029926	None:intergenic
CCATCCTCTTCAATCGAACC+AGG	0.562739	2:-11027049	MsaT006877.1:intron
CATTGAAGGAGATTCTCCCT+TGG	0.563702	2:+11028096	None:intergenic
CACGCAACAACGTTCTTCCT+CGG	0.565317	2:+11029866	None:intergenic
GTGCTGGAGTGTGTAGGAGT+TGG	0.567870	2:-11029844	MsaT006877.1:CDS
GGCGGAGAAGGAAGAGAAAG+TGG	0.570148	2:-11029990	MsaT006877.1:CDS
TCATATGAATTAAATGTGCT+AGG	0.570586	2:-11027523	MsaT006877.1:CDS
CCTGGTTCGATTGAAGAGGA+TGG	0.573458	2:+11027049	None:intergenic
TACATTTGCGTGCAGCCAGA+AGG	0.580300	2:+11027882	None:intergenic
TGGACGGGTGACAATTGCCT+CGG	0.581243	2:-11026821	MsaT006877.1:CDS
AAGGAAGAGAAAGTGGCGGT+TGG	0.582497	2:-11029983	MsaT006877.1:CDS
ATCGCAAAGAGTAGTGGTGG+TGG	0.589679	2:-11030011	MsaT006877.1:CDS
TTGCGTGTGCTGGAGTGTGT+AGG	0.591079	2:-11029850	MsaT006877.1:CDS
CGGAGGACACGTGGCCGCCG+AGG	0.594437	2:-11029883	MsaT006877.1:CDS
GCAAAGAGTAGTGGTGGTGG+CGG	0.599034	2:-11030008	MsaT006877.1:CDS
CTTGTTGGCGATAAAAGAGA+TGG	0.602960	2:-11026913	MsaT006877.1:CDS
GAAATGCCGAAATAGGGTAT+CGG	0.603573	2:+11026688	None:intergenic
TTGAGGCCTCGGAGGACACG+TGG	0.607574	2:-11029892	MsaT006877.1:CDS
GCCACCTGGTTCGATTGAAG+AGG	0.610396	2:+11027045	None:intergenic
AAACAAATAATATGTTTGAG+TGG	0.611039	2:+11028053	None:intergenic
AGACGCAGATGATATGTCCA+GGG	0.615218	2:-11027825	MsaT006877.1:CDS
ATCAAGATCGCAAAGAGTAG+TGG	0.616284	2:-11030017	MsaT006877.1:CDS
ACAAAGTTCACTATCTATGA+CGG	0.627271	2:-11027658	MsaT006877.1:CDS
TCTAAAGCAGGTTTCACCCA+AGG	0.631576	2:-11027578	MsaT006877.1:CDS
TCTCCGAATTGAGGCCTCGG+AGG	0.639401	2:-11029900	MsaT006877.1:CDS
AAGATCGCAAAGAGTAGTGG+TGG	0.644592	2:-11030014	MsaT006877.1:CDS
CGGCGGCCACGTGTCCTCCG+AGG	0.663112	2:+11029886	None:intergenic
TCTTGGTATCAAAGCTGCTG+AGG	0.664183	2:+11026649	None:intergenic
CCCAACAGGCAACTATCCAG+TGG	0.669323	2:-11027554	MsaT006877.1:CDS
AAACCTGTTTAACAGAAATG+GGG	0.674456	2:+11029765	None:intergenic
GACGCAGATGATATGTCCAG+GGG	0.717675	2:-11027824	MsaT006877.1:CDS
GCAACAACGTTCTTCCTCGG+CGG	0.717767	2:+11029869	None:intergenic
GGAGAAGGAAGAGAAAGTGG+CGG	0.735942	2:-11029987	MsaT006877.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	11026657	11030074	11026657	ID=MsaG006877
Chr2	mRNA	11026657	11030074	11026657	ID=MsaT006877.1;Parent=MsaG006877
Chr2	exon	11026657	11026955	11026657	ID=MsaT006877.1.exon6;Parent=MsaT006877.1
Chr2	CDS	11026657	11026955	11026657	ID=cds.MsaT006877.1;Parent=MsaT006877.1
Chr2	exon	11027050	11027108	11027050	ID=MsaT006877.1.exon5;Parent=MsaT006877.1
Chr2	CDS	11027050	11027108	11027050	ID=cds.MsaT006877.1;Parent=MsaT006877.1
Chr2	exon	11027517	11027696	11027517	ID=MsaT006877.1.exon4;Parent=MsaT006877.1
Chr2	CDS	11027517	11027696	11027517	ID=cds.MsaT006877.1;Parent=MsaT006877.1
Chr2	exon	11027797	11027926	11027797	ID=MsaT006877.1.exon3;Parent=MsaT006877.1
Chr2	CDS	11027797	11027926	11027797	ID=cds.MsaT006877.1;Parent=MsaT006877.1
Chr2	exon	11028037	11028124	11028037	ID=MsaT006877.1.exon2;Parent=MsaT006877.1
Chr2	CDS	11028037	11028124	11028037	ID=cds.MsaT006877.1;Parent=MsaT006877.1
Chr2	exon	11029769	11030074	11029769	ID=MsaT006877.1.exon1;Parent=MsaT006877.1
Chr2	CDS	11029769	11030074	11029769	ID=cds.MsaT006877.1;Parent=MsaT006877.1

Gene Sequence

>MsaT006877.1

ATGGCTATAATCCGCAACATAATCGAAGACATGAGATCAAGATCGCAAAGAGTAGTGGTGGTGGCGGAGAAGGAAGAGAAAGTGGCGGTTGGCGACAGTTTACGGCAGAGTTGTTGGGCTAACATGCCACAAGAGCTTCTGCGTGAAGTTCTTCTCCGAATTGAGGCCTCGGAGGACACGTGGCCGCCGAGGAAGAACGTTGTTGCGTGTGCTGGAGTGTGTAGGAGTTGGAGAGTTATCACTAAAGAGATTGTTAAAAAACCTGAAATTTCAGCTATGATCACTTTCCCCATTTCTGTTAAACAGCCTGGTCCAAGGGAGAATCTCCTTCAATGCTTTATAAAGCGCAACCGGTCCACTCAAACATATTATTTGTTTCTCAGTTTAACTAGTTCGCTAGGTGATGACGGGAAGTTCCTTCTGGCTGCACGCAAATGTAGACGTCCTACATGCACAGATTATATCATCTCTCTAGACGCAGATGATATGTCCAGGGGAAGCAACAACTATGTTGGGAAATTGAGATCAAATTTCCTTGGAACAAAGTTCACTATCTATGACGGCCAGCCACCTCATGCAGGAGCAAAATTTACTAAAAGTCGTTCTACTAGGTTGGTGAATCTAAAGCAGGTTTCACCCAAGGTCCCAACAGGCAACTATCCAGTGGCTCACATCTCATATGAATTAAATGTGCTAGGCTCTAGGGGGCCAAGGAGAATGCACTGTGTCATGGATTCCATTCCATCCTCTTCAATCGAACCAGAGAACTCTCTATCCGGACCTCTTGTTGGCGATAAAAGAGATGGTATGCTTGTGTTGAAAAACAAGGCTCCGAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAATTTTCATGGACGGGTGACAATTGCCTCGGTTAAAAACTTTCAGCTGGTGGCTTCCGAGAAAATGGAACAGCTGGACCGAACACGACAAGATTATTCTGCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTTCCGATACCCTATTTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGA

Protein sequence

>MsaT006877.1

MAIIRNIIEDMRSRSQRVVVVAEKEEKVAVGDSLRQSCWANMPQELLREVLLRIEASEDTWPPRKNVVACAGVCRSWRVITKEIVKKPEISAMITFPISVKQPGPRENLLQCFIKRNRSTQTYYLFLSLTSSLGDDGKFLLAARKCRRPTCTDYIISLDADDMSRGSNNYVGKLRSNFLGTKFTIYDGQPPHAGAKFTKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPSSSIEPENSLSGPLVGDKRDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASEKMEQLDRTRQDYSAIWKSWEGFVYNGFPIPYFGISGICNLPQQL*