AlfalfaGEDB | MsaG006910

M. sativa ssp. caerulea / MsaG006910

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006910	XP_024632645.2	94.152	342	20	0	34	375	101	442	0.0	670

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006910	sp\|Q8RXC8\|RBK2_ARATH	63.030	330	121	1	43	371	131	460	2.08e-150	435

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006910	tr\|A0A396J3B6\|A0A396J3B6_MEDTR	94.152	342	20	0	34	375	106	447	0.0	670

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG006910	0.858369	1.687993e-62	1.234005e-59
MsaG000081	MsaG006910	0.851234	1.935769e-60	1.094735e-57
MsaG000234	MsaG006910	0.862020	1.347012e-63	1.131343e-60
MsaG000364	MsaG006910	0.875361	6.790546e-68	9.920733e-65
MsaG000379	MsaG006910	0.885654	1.457284e-71	3.445465e-68
MsaG000479	MsaG006910	0.836524	1.627703e-56	5.707135e-54
MsaG000520	MsaG006910	0.936627	3.668311e-97	2.585407e-92
MsaG000583	MsaG006910	0.820844	9.709153e-53	2.183524e-50
MsaG000842	MsaG006910	0.829447	9.191589e-55	2.618290e-52
MsaG001223	MsaG006910	0.800976	1.873839e-48	2.589943e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006910	MtrunA17_Chr2g0286821	94.152	342	20	0	34	375	106	447	0.0	670
MsaG006910	MtrunA17_Chr1g0196381	64.000	300	108	0	47	346	110	409	1.28e-146	421
MsaG006910	MtrunA17_Chr5g0412141	56.442	326	135	4	47	369	130	451	3.08e-134	391
MsaG006910	MtrunA17_Chr8g0367241	55.287	331	140	4	43	369	153	479	1.03e-130	383
MsaG006910	MtrunA17_Chr4g0072891	51.553	322	146	3	9	320	213	534	4.74e-114	343
MsaG006910	MtrunA17_Chr4g0072221	52.475	303	138	3	35	335	46	344	1.06e-112	333
MsaG006910	MtrunA17_Chr1g0191381	63.755	229	82	1	43	270	141	369	2.12e-105	315
MsaG006910	MtrunA17_Chr7g0273311	61.244	209	81	0	137	345	4	212	7.60e-93	277
MsaG006910	MtrunA17_Chr1g0159711	44.369	293	153	4	47	331	347	637	8.87e-78	253
MsaG006910	MtrunA17_Chr4g0036981	45.051	293	149	4	43	325	289	579	9.94e-78	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006910	AT5G18910.1	74.242	330	85	0	43	372	180	509	0.0	523
MsaG006910	AT3G05140.1	63.030	330	121	1	43	371	131	460	2.12e-151	435
MsaG006910	AT3G05140.2	63.030	330	121	1	43	371	179	508	4.58e-151	436
MsaG006910	AT5G35960.1	62.376	303	114	0	44	346	123	425	3.26e-145	418
MsaG006910	AT5G35960.2	67.399	273	89	0	44	316	123	395	4.75e-142	409
MsaG006910	AT5G65530.1	55.927	329	136	5	44	369	133	455	1.05e-127	375
MsaG006910	AT5G10520.1	51.227	326	152	3	47	369	145	466	1.45e-119	354
MsaG006910	AT2G18890.1	53.497	286	129	3	43	324	56	341	9.03e-111	329
MsaG006910	AT5G57670.2	54.610	282	126	2	47	326	259	540	4.69e-109	331
MsaG006910	AT2G18890.3	53.597	278	125	3	43	316	56	333	2.98e-108	321

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Find 70 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATGTATATGCTTA+TGG	0.384755	2:-11363370	MsaT006910.1:CDS
AAGGATGACAAGCTTCCATG+AGG	0.699252	2:+11364340	None:intergenic
AATCTGCTGTCATTTCTTCT+TGG	0.274319	2:+11364467	None:intergenic
ACAGCGACCGCATATGAGTC+AGG	0.487136	2:-11363059	MsaT006910.1:intron
AGAGCTAGTTGATCCAGTTT+TGG	0.288062	2:-11363155	MsaT006910.1:CDS
AGAGCTGGAGAATTGAGAGA+TGG	0.629278	2:+11364852	None:intergenic
AGCTTGTCATCCTTACTCTA+TGG	0.383003	2:-11364331	MsaT006910.1:intron
ATACCATGCATGAAGAATTC+AGG	0.394061	2:+11363403	None:intergenic
ATCTGCTGTCATTTCTTCTT+GGG	0.315900	2:+11364468	None:intergenic
ATGTTATTACTAGTTAGCAA+AGG	0.613088	2:+11363181	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	11362029	11364927	11362029	ID=MsaG006910
Chr2	mRNA	11362029	11364927	11362029	ID=MsaT006910.1;Parent=MsaG006910
Chr2	exon	11362029	11362211	11362029	ID=MsaT006910.1.exon7;Parent=MsaT006910.1
Chr2	CDS	11362029	11362211	11362029	ID=cds.MsaT006910.1;Parent=MsaT006910.1
Chr2	exon	11363060	11363209	11363060	ID=MsaT006910.1.exon6;Parent=MsaT006910.1
Chr2	CDS	11363060	11363209	11363060	ID=cds.MsaT006910.1;Parent=MsaT006910.1
Chr2	exon	11363300	11363435	11363300	ID=MsaT006910.1.exon5;Parent=MsaT006910.1
Chr2	CDS	11363300	11363435	11363300	ID=cds.MsaT006910.1;Parent=MsaT006910.1
Chr2	exon	11363552	11363631	11363552	ID=MsaT006910.1.exon4;Parent=MsaT006910.1
Chr2	CDS	11363552	11363631	11363552	ID=cds.MsaT006910.1;Parent=MsaT006910.1
Chr2	exon	11363873	11364027	11363873	ID=MsaT006910.1.exon3;Parent=MsaT006910.1
Chr2	CDS	11363873	11364027	11363873	ID=cds.MsaT006910.1;Parent=MsaT006910.1
Chr2	exon	11364332	11364583	11364332	ID=MsaT006910.1.exon2;Parent=MsaT006910.1
Chr2	CDS	11364332	11364583	11364332	ID=cds.MsaT006910.1;Parent=MsaT006910.1
Chr2	exon	11364756	11364927	11364756	ID=MsaT006910.1.exon1;Parent=MsaT006910.1
Chr2	CDS	11364756	11364927	11364756	ID=cds.MsaT006910.1;Parent=MsaT006910.1

Gene Sequence

>MsaT006910.1

ATGTTCCAAAACTTACTAGAAGAAAAAGCAAAAGAATTCGGGAGGATTTCATTCCATCTCTCAATTCTCCAGCTCTTCAGTCTTCTTTTGATTCTGAGTTTATGTGCTTCAAATCTTCATGGAAAAATTTCACTCGCAGAAATCCAAGCTGCAACCAATGACTTTAGCCAAGATAATTTGATTGGGGAGGGAGGCTATGCTGAGGTTTACTTAGGAAAACTGGAAGATGGAAACTTTGTTGCCATTAAAAGGTTGACAAGAGGTTCCCAAGAAGAAATGACAGCAGATTTTTTGTCTGAGCTTGGCATTATAGTGCATGTAGATCACCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAATTGTCTCCTCATGGAAGCTTGTCATCCTTACTCTATGGACCTAGAGAGAAACTGAATTGGAGCCTTAGATTTAAGATTACTTTGGGGACTGCTGAGGGTCTTCGCTATCTGCACGAGGGATGTCAAAGAAGGATTATTCACAAAGATATCAAAGCTTCTAACATACTTCTCTCAGAGGACTTTGAGCCTCAGATATCTGATTTTGGGCTTGCAAAGTGGTTACCTGATCAATGGACTCACCATACTGTTTCCAAAGTGGAAGGCACATTTGGCTATCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACTGATGTATATGCTTATGGTGTACTATTATTGGAGCTCATTACTGGGAGACAAGCATTGGATAGTTCACAAAAAAGTCTGGTGATGTGGGCAAAACCTTTGCTAACTAGTAATAACATCAAAGAGCTAGTTGATCCAGTTTTGGGTGATGCTTATGATGCAGAACAGATGAAACTTGTAATATTAAGTGCTTCGATGTGTATAGATCAGTCCTCAATACAGCGACCGCATATGAGTCAGGTCTTACAGATACTAAGAGGTGAAGAAGAGAGTTTGAGAATGTTGAAAGAGAGGCAGAAGTCAAAACTTCATAGGACGTACTCAGAAGAACTATATGCTGCAGAAGATTACAACTCAACGAAGTTTTTGAGCGACAGGGATCGATATATGGAGATGATTTTAGGCTCCAGCAATCCAAATTAG

Protein sequence

>MsaT006910.1

MFQNLLEEKAKEFGRISFHLSILQLFSLLLILSLCASNLHGKISLAEIQAATNDFSQDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGSQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSLLYGPREKLNWSLRFKITLGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLTSNNIKELVDPVLGDAYDAEQMKLVILSASMCIDQSSIQRPHMSQVLQILRGEEESLRMLKERQKSKLHRTYSEELYAAEDYNSTKFLSDRDRYMEMILGSSNPN*