Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007029 | XP_013462813.1 | 97.403 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 4.87e-49 | 159 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007029 | sp|O22059|CPC_ARATH | 63.636 | 44 | 16 | 0 | 27 | 70 | 36 | 79 | 1.68e-16 | 70.5 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007029 | tr|A0A072V6B3|A0A072V6B3_MEDTR | 97.403 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 2.32e-49 | 159 |
Gene ID | Type | Classification |
---|---|---|
MsaG007029 | TF | MYB-related |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007029 | MtrunA17_Chr2g0288361 | 97.403 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 4.48e-53 | 159 |
MsaG007029 | MtrunA17_Chr4g0024181 | 49.333 | 75 | 35 | 2 | 1 | 74 | 1 | 73 | 3.57e-20 | 76.3 |
MsaG007029 | MtrunA17_Chr2g0322831 | 59.184 | 49 | 20 | 0 | 27 | 75 | 32 | 80 | 9.03e-18 | 70.5 |
MsaG007029 | MtrunA17_Chr5g0396771 | 42.647 | 68 | 36 | 1 | 7 | 74 | 20 | 84 | 7.08e-15 | 63.2 |
MsaG007029 | MtrunA17_Chr3g0121241 | 51.111 | 45 | 22 | 0 | 28 | 72 | 99 | 143 | 1.78e-12 | 60.5 |
MsaG007029 | MtrunA17_Chr4g0055981 | 51.163 | 43 | 21 | 0 | 29 | 71 | 113 | 155 | 6.65e-12 | 58.2 |
MsaG007029 | MtrunA17_Chr7g0275911 | 51.163 | 43 | 21 | 0 | 30 | 72 | 71 | 113 | 1.19e-11 | 57.8 |
MsaG007029 | MtrunA17_Chr7g0240821 | 47.727 | 44 | 23 | 0 | 29 | 72 | 59 | 102 | 1.20e-11 | 57.8 |
MsaG007029 | MtrunA17_Chr8g0360111 | 47.727 | 44 | 23 | 0 | 29 | 72 | 83 | 126 | 1.78e-11 | 57.4 |
MsaG007029 | MtrunA17_Chr4g0070641 | 44.444 | 45 | 25 | 0 | 28 | 72 | 69 | 113 | 1.98e-11 | 56.2 |
MsaG007029 | MtrunA17_Chr7g0229101 | 45.455 | 44 | 24 | 0 | 28 | 71 | 29 | 72 | 2.60e-11 | 56.6 |
MsaG007029 | MtrunA17_Chr5g0435101 | 48.837 | 43 | 22 | 0 | 29 | 71 | 69 | 111 | 2.98e-11 | 56.2 |
MsaG007029 | MtrunA17_Chr7g0228991 | 46.000 | 50 | 24 | 1 | 18 | 67 | 79 | 125 | 6.08e-11 | 55.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007029 | AT2G46410.1 | 63.636 | 44 | 16 | 0 | 27 | 70 | 36 | 79 | 1.70e-17 | 70.5 |
MsaG007029 | AT4G01060.1 | 50.000 | 64 | 29 | 1 | 7 | 70 | 16 | 76 | 5.71e-16 | 65.9 |
MsaG007029 | AT1G01380.1 | 56.818 | 44 | 19 | 0 | 27 | 70 | 32 | 75 | 1.51e-15 | 65.1 |
MsaG007029 | AT5G53200.1 | 52.000 | 50 | 24 | 0 | 27 | 76 | 31 | 80 | 2.03e-15 | 65.5 |
MsaG007029 | AT4G01060.2 | 60.000 | 45 | 18 | 0 | 26 | 70 | 29 | 73 | 2.10e-15 | 64.3 |
MsaG007029 | AT4G01060.3 | 60.000 | 45 | 18 | 0 | 26 | 70 | 30 | 74 | 2.71e-15 | 64.3 |
MsaG007029 | AT2G30420.1 | 36.111 | 72 | 43 | 1 | 1 | 72 | 15 | 83 | 1.74e-12 | 58.2 |
MsaG007029 | AT2G30424.1 | 50.000 | 44 | 22 | 0 | 27 | 70 | 34 | 77 | 4.93e-12 | 56.6 |
MsaG007029 | AT5G52600.1 | 45.455 | 44 | 24 | 0 | 29 | 72 | 70 | 113 | 1.09e-11 | 57.8 |
MsaG007029 | AT5G14750.4 | 43.182 | 44 | 25 | 0 | 29 | 72 | 13 | 56 | 2.21e-11 | 55.8 |
MsaG007029 | AT5G14750.2 | 43.182 | 44 | 25 | 0 | 29 | 72 | 13 | 56 | 2.21e-11 | 55.8 |
MsaG007029 | AT2G30432.1 | 44.262 | 61 | 31 | 2 | 10 | 70 | 19 | 76 | 4.10e-11 | 53.9 |
MsaG007029 | AT3G13540.1 | 52.500 | 40 | 19 | 0 | 30 | 69 | 82 | 121 | 8.08e-11 | 55.8 |
Find 16 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAACGATATCTTCCTCTTC+TGG | 0.165562 | 2:+12873520 | None:intergenic |
ATATCTTCTGGGGTTCTTCC+AGG | 0.255062 | 2:+12873304 | None:intergenic |
CAACGATATCTTCCTCTTCT+GGG | 0.371629 | 2:+12873521 | None:intergenic |
TGTAGATGGCATCTCATTGC+TGG | 0.392405 | 2:-12873334 | MsaT007029.1:intron |
CTCATTGCTGGGAGAATCCC+TGG | 0.434907 | 2:-12873322 | MsaT007029.1:CDS |
CAGAAGATATTGAAAAGTAT+TGG | 0.446559 | 2:-12873291 | MsaT007029.1:CDS |
TATCTTCTGGGGTTCTTCCA+GGG | 0.463656 | 2:+12873305 | None:intergenic |
GATGAAACGTGAGGCTGTGC+TGG | 0.475255 | 2:-12873551 | MsaT007029.1:CDS |
AATGGCCAGTATGTCTCTTC+AGG | 0.479277 | 2:-12873748 | MsaT007029.1:intron |
TGTTTAGATTGGTCGGAAAG+AGG | 0.513739 | 2:-12873492 | MsaT007029.1:intron |
TGGTACCTGAAGAGACATAC+TGG | 0.523534 | 2:+12873743 | None:intergenic |
GTAGATGGCATCTCATTGCT+GGG | 0.572643 | 2:-12873333 | MsaT007029.1:intron |
AACGATATCTTCCTCTTCTG+GGG | 0.611771 | 2:+12873522 | None:intergenic |
TATGCAACCACTGCAAACAA+TGG | 0.637268 | 2:-12873766 | MsaT007029.1:CDS |
ATACTGGCCATTGTTTGCAG+TGG | 0.645184 | 2:+12873759 | None:intergenic |
CTCAGATCAGATGAAACGTG+AGG | 0.650176 | 2:-12873560 | MsaT007029.1:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 12873258 | 12873803 | 12873258 | ID=MsaG007029 |
Chr2 | mRNA | 12873258 | 12873803 | 12873258 | ID=MsaT007029.1;Parent=MsaG007029 |
Chr2 | exon | 12873258 | 12873351 | 12873258 | ID=MsaT007029.1.exon3;Parent=MsaT007029.1 |
Chr2 | CDS | 12873258 | 12873351 | 12873258 | ID=cds.MsaT007029.1;Parent=MsaT007029.1 |
Chr2 | exon | 12873493 | 12873577 | 12873493 | ID=MsaT007029.1.exon2;Parent=MsaT007029.1 |
Chr2 | CDS | 12873493 | 12873577 | 12873493 | ID=cds.MsaT007029.1;Parent=MsaT007029.1 |
Chr2 | exon | 12873749 | 12873803 | 12873749 | ID=MsaT007029.1.exon1;Parent=MsaT007029.1 |
Chr2 | CDS | 12873749 | 12873803 | 12873749 | ID=cds.MsaT007029.1;Parent=MsaT007029.1 |
Gene Sequence |
Protein sequence |