AlfalfaGEDB | MsaG007029

M. sativa ssp. caerulea / MsaG007029

KEGG: -
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010016 GO:0010033 GO:0010061 GO:0010063 GO:0010103 GO:0010374 GO:0010376 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0022603 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042659 GO:0042660 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0046677 GO:0048367 GO:0048518 GO:0048522 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0060429 GO:0065007 GO:0080090 GO:0090558 GO:0090626 GO:0090698 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1903888 GO:1903890 GO:1905421 GO:1905423 GO:2000026 GO:2000067 GO:2000112 GO:2000280 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007029	XP_013462813.1	97.403	77	2	0	1	77	1	77	4.87e-49	159

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007029	sp\|O22059\|CPC_ARATH	63.636	44	16	0	27	70	36	79	1.68e-16	70.5

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007029	tr\|A0A072V6B3\|A0A072V6B3_MEDTR	97.403	77	2	0	1	77	1	77	2.32e-49	159

TFs/TRs:

Gene ID	Type	Classification
MsaG007029	TF	MYB-related

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007029	MtrunA17_Chr2g0288361	97.403	77	2	0	1	77	1	77	4.48e-53	159
MsaG007029	MtrunA17_Chr4g0024181	49.333	75	35	2	1	74	1	73	3.57e-20	76.3
MsaG007029	MtrunA17_Chr2g0322831	59.184	49	20	0	27	75	32	80	9.03e-18	70.5
MsaG007029	MtrunA17_Chr5g0396771	42.647	68	36	1	7	74	20	84	7.08e-15	63.2
MsaG007029	MtrunA17_Chr3g0121241	51.111	45	22	0	28	72	99	143	1.78e-12	60.5
MsaG007029	MtrunA17_Chr4g0055981	51.163	43	21	0	29	71	113	155	6.65e-12	58.2
MsaG007029	MtrunA17_Chr7g0275911	51.163	43	21	0	30	72	71	113	1.19e-11	57.8
MsaG007029	MtrunA17_Chr7g0240821	47.727	44	23	0	29	72	59	102	1.20e-11	57.8
MsaG007029	MtrunA17_Chr8g0360111	47.727	44	23	0	29	72	83	126	1.78e-11	57.4
MsaG007029	MtrunA17_Chr4g0070641	44.444	45	25	0	28	72	69	113	1.98e-11	56.2
MsaG007029	MtrunA17_Chr7g0229101	45.455	44	24	0	28	71	29	72	2.60e-11	56.6
MsaG007029	MtrunA17_Chr5g0435101	48.837	43	22	0	29	71	69	111	2.98e-11	56.2
MsaG007029	MtrunA17_Chr7g0228991	46.000	50	24	1	18	67	79	125	6.08e-11	55.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007029	AT2G46410.1	63.636	44	16	0	27	70	36	79	1.70e-17	70.5
MsaG007029	AT4G01060.1	50.000	64	29	1	7	70	16	76	5.71e-16	65.9
MsaG007029	AT1G01380.1	56.818	44	19	0	27	70	32	75	1.51e-15	65.1
MsaG007029	AT5G53200.1	52.000	50	24	0	27	76	31	80	2.03e-15	65.5
MsaG007029	AT4G01060.2	60.000	45	18	0	26	70	29	73	2.10e-15	64.3
MsaG007029	AT4G01060.3	60.000	45	18	0	26	70	30	74	2.71e-15	64.3
MsaG007029	AT2G30420.1	36.111	72	43	1	1	72	15	83	1.74e-12	58.2
MsaG007029	AT2G30424.1	50.000	44	22	0	27	70	34	77	4.93e-12	56.6
MsaG007029	AT5G52600.1	45.455	44	24	0	29	72	70	113	1.09e-11	57.8
MsaG007029	AT5G14750.4	43.182	44	25	0	29	72	13	56	2.21e-11	55.8
MsaG007029	AT5G14750.2	43.182	44	25	0	29	72	13	56	2.21e-11	55.8
MsaG007029	AT2G30432.1	44.262	61	31	2	10	70	19	76	4.10e-11	53.9
MsaG007029	AT3G13540.1	52.500	40	19	0	30	69	82	121	8.08e-11	55.8

Find 16 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAACGATATCTTCCTCTTC+TGG	0.165562	2:+12873520	None:intergenic
ATATCTTCTGGGGTTCTTCC+AGG	0.255062	2:+12873304	None:intergenic
CAACGATATCTTCCTCTTCT+GGG	0.371629	2:+12873521	None:intergenic
TGTAGATGGCATCTCATTGC+TGG	0.392405	2:-12873334	MsaT007029.1:intron
CTCATTGCTGGGAGAATCCC+TGG	0.434907	2:-12873322	MsaT007029.1:CDS
CAGAAGATATTGAAAAGTAT+TGG	0.446559	2:-12873291	MsaT007029.1:CDS
TATCTTCTGGGGTTCTTCCA+GGG	0.463656	2:+12873305	None:intergenic
GATGAAACGTGAGGCTGTGC+TGG	0.475255	2:-12873551	MsaT007029.1:CDS
AATGGCCAGTATGTCTCTTC+AGG	0.479277	2:-12873748	MsaT007029.1:intron
TGTTTAGATTGGTCGGAAAG+AGG	0.513739	2:-12873492	MsaT007029.1:intron
TGGTACCTGAAGAGACATAC+TGG	0.523534	2:+12873743	None:intergenic
GTAGATGGCATCTCATTGCT+GGG	0.572643	2:-12873333	MsaT007029.1:intron
AACGATATCTTCCTCTTCTG+GGG	0.611771	2:+12873522	None:intergenic
TATGCAACCACTGCAAACAA+TGG	0.637268	2:-12873766	MsaT007029.1:CDS
ATACTGGCCATTGTTTGCAG+TGG	0.645184	2:+12873759	None:intergenic
CTCAGATCAGATGAAACGTG+AGG	0.650176	2:-12873560	MsaT007029.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	12873258	12873803	12873258	ID=MsaG007029
Chr2	mRNA	12873258	12873803	12873258	ID=MsaT007029.1;Parent=MsaG007029
Chr2	exon	12873258	12873351	12873258	ID=MsaT007029.1.exon3;Parent=MsaT007029.1
Chr2	CDS	12873258	12873351	12873258	ID=cds.MsaT007029.1;Parent=MsaT007029.1
Chr2	exon	12873493	12873577	12873493	ID=MsaT007029.1.exon2;Parent=MsaT007029.1
Chr2	CDS	12873493	12873577	12873493	ID=cds.MsaT007029.1;Parent=MsaT007029.1
Chr2	exon	12873749	12873803	12873749	ID=MsaT007029.1.exon1;Parent=MsaT007029.1
Chr2	CDS	12873749	12873803	12873749	ID=cds.MsaT007029.1;Parent=MsaT007029.1

Gene Sequence	>MsaT007029.1 ATGAGTGACTCAAAGTATGCAACCACTGCAAACAATGGCCAGTATGTCTCTTCAGATCAGATGAAACGTGAGGCTGTGCTGGAATTTTCCCCAGAAGAGGAAGATATCGTTGCAAAAATGTTTAGATTGGTCGGAAAGAGATGGCATCTCATTGCTGGGAGAATCCCTGGAAGAACCCCAGAAGATATTGAAAAGTATTGGACATCAAAGTTCTCATCATCAACTGCATGCTAA
Protein sequence	>MsaT007029.1 MSDSKYATTANNGQYVSSDQMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTPEDIEKYWTSKFSSSTAC*