AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG007029


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG007029 MtrunA17_Chr2g0288361 97.403 77 2 0 1 77 1 77 4.48e-53 159
MsaG007029 MtrunA17_Chr4g0024181 49.333 75 35 2 1 74 1 73 3.57e-20 76.3
MsaG007029 MtrunA17_Chr2g0322831 59.184 49 20 0 27 75 32 80 9.03e-18 70.5
MsaG007029 MtrunA17_Chr5g0396771 42.647 68 36 1 7 74 20 84 7.08e-15 63.2
MsaG007029 MtrunA17_Chr3g0121241 51.111 45 22 0 28 72 99 143 1.78e-12 60.5
MsaG007029 MtrunA17_Chr4g0055981 51.163 43 21 0 29 71 113 155 6.65e-12 58.2
MsaG007029 MtrunA17_Chr7g0275911 51.163 43 21 0 30 72 71 113 1.19e-11 57.8
MsaG007029 MtrunA17_Chr7g0240821 47.727 44 23 0 29 72 59 102 1.20e-11 57.8
MsaG007029 MtrunA17_Chr8g0360111 47.727 44 23 0 29 72 83 126 1.78e-11 57.4
MsaG007029 MtrunA17_Chr4g0070641 44.444 45 25 0 28 72 69 113 1.98e-11 56.2
MsaG007029 MtrunA17_Chr7g0229101 45.455 44 24 0 28 71 29 72 2.60e-11 56.6
MsaG007029 MtrunA17_Chr5g0435101 48.837 43 22 0 29 71 69 111 2.98e-11 56.2
MsaG007029 MtrunA17_Chr7g0228991 46.000 50 24 1 18 67 79 125 6.08e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG007029 AT2G46410.1 63.636 44 16 0 27 70 36 79 1.70e-17 70.5
MsaG007029 AT4G01060.1 50.000 64 29 1 7 70 16 76 5.71e-16 65.9
MsaG007029 AT1G01380.1 56.818 44 19 0 27 70 32 75 1.51e-15 65.1
MsaG007029 AT5G53200.1 52.000 50 24 0 27 76 31 80 2.03e-15 65.5
MsaG007029 AT4G01060.2 60.000 45 18 0 26 70 29 73 2.10e-15 64.3
MsaG007029 AT4G01060.3 60.000 45 18 0 26 70 30 74 2.71e-15 64.3
MsaG007029 AT2G30420.1 36.111 72 43 1 1 72 15 83 1.74e-12 58.2
MsaG007029 AT2G30424.1 50.000 44 22 0 27 70 34 77 4.93e-12 56.6
MsaG007029 AT5G52600.1 45.455 44 24 0 29 72 70 113 1.09e-11 57.8
MsaG007029 AT5G14750.4 43.182 44 25 0 29 72 13 56 2.21e-11 55.8
MsaG007029 AT5G14750.2 43.182 44 25 0 29 72 13 56 2.21e-11 55.8
MsaG007029 AT2G30432.1 44.262 61 31 2 10 70 19 76 4.10e-11 53.9
MsaG007029 AT3G13540.1 52.500 40 19 0 30 69 82 121 8.08e-11 55.8

Find 16 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACGATATCTTCCTCTTC+TGG 0.165562 2:+12873520 None:intergenic
ATATCTTCTGGGGTTCTTCC+AGG 0.255062 2:+12873304 None:intergenic
CAACGATATCTTCCTCTTCT+GGG 0.371629 2:+12873521 None:intergenic
TGTAGATGGCATCTCATTGC+TGG 0.392405 2:-12873334 MsaT007029.1:intron
CTCATTGCTGGGAGAATCCC+TGG 0.434907 2:-12873322 MsaT007029.1:CDS
CAGAAGATATTGAAAAGTAT+TGG 0.446559 2:-12873291 MsaT007029.1:CDS
TATCTTCTGGGGTTCTTCCA+GGG 0.463656 2:+12873305 None:intergenic
GATGAAACGTGAGGCTGTGC+TGG 0.475255 2:-12873551 MsaT007029.1:CDS
AATGGCCAGTATGTCTCTTC+AGG 0.479277 2:-12873748 MsaT007029.1:intron
TGTTTAGATTGGTCGGAAAG+AGG 0.513739 2:-12873492 MsaT007029.1:intron
TGGTACCTGAAGAGACATAC+TGG 0.523534 2:+12873743 None:intergenic
GTAGATGGCATCTCATTGCT+GGG 0.572643 2:-12873333 MsaT007029.1:intron
AACGATATCTTCCTCTTCTG+GGG 0.611771 2:+12873522 None:intergenic
TATGCAACCACTGCAAACAA+TGG 0.637268 2:-12873766 MsaT007029.1:CDS
ATACTGGCCATTGTTTGCAG+TGG 0.645184 2:+12873759 None:intergenic
CTCAGATCAGATGAAACGTG+AGG 0.650176 2:-12873560 MsaT007029.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 12873258 12873803 12873258 ID=MsaG007029
Chr2 mRNA 12873258 12873803 12873258 ID=MsaT007029.1;Parent=MsaG007029
Chr2 exon 12873258 12873351 12873258 ID=MsaT007029.1.exon3;Parent=MsaT007029.1
Chr2 CDS 12873258 12873351 12873258 ID=cds.MsaT007029.1;Parent=MsaT007029.1
Chr2 exon 12873493 12873577 12873493 ID=MsaT007029.1.exon2;Parent=MsaT007029.1
Chr2 CDS 12873493 12873577 12873493 ID=cds.MsaT007029.1;Parent=MsaT007029.1
Chr2 exon 12873749 12873803 12873749 ID=MsaT007029.1.exon1;Parent=MsaT007029.1
Chr2 CDS 12873749 12873803 12873749 ID=cds.MsaT007029.1;Parent=MsaT007029.1
Gene Sequence

>MsaT007029.1

ATGAGTGACTCAAAGTATGCAACCACTGCAAACAATGGCCAGTATGTCTCTTCAGATCAGATGAAACGTGAGGCTGTGCTGGAATTTTCCCCAGAAGAGGAAGATATCGTTGCAAAAATGTTTAGATTGGTCGGAAAGAGATGGCATCTCATTGCTGGGAGAATCCCTGGAAGAACCCCAGAAGATATTGAAAAGTATTGGACATCAAAGTTCTCATCATCAACTGCATGCTAA

Protein sequence

>MsaT007029.1

MSDSKYATTANNGQYVSSDQMKREAVLEFSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTPEDIEKYWTSKFSSSTAC*