AlfalfaGEDB | MsaG007039

M. sativa ssp. caerulea / MsaG007039

KEGG: K08066 K19681
GO: GO:0000429 GO:0000436 GO:0000902 GO:0000904 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006457 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0007584 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016602 GO:0018130 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0019438 GO:0022008 GO:0030030 GO:0030154 GO:0030182 GO:0031175 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032990 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0034654 GO:0040011 GO:0042221 GO:0042330 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043457 GO:0043467 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045540 GO:0045893 GO:0045935 GO:0045944 GO:0045990 GO:0045991 GO:0046483 GO:0046890 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061564 GO:0062012 GO:0065007 GO:0070013 GO:0070887 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090181 GO:0090304 GO:0090575 GO:0097159 GO:0097485 GO:0097659 GO:0106118 GO:0120036 GO:0120039 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00125.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007039	XP_013462829.1	85.214	257	25	3	1	257	1	244	3.38e-145	416

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007039	sp\|Q9ZVL3\|NFYC3_ARATH	52.500	160	70	3	69	224	51	208	4.42e-48	161

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007039	tr\|I3TAY7\|I3TAY7_MEDTR	85.214	257	25	3	1	257	1	244	1.61e-145	416

TFs/TRs:

Gene ID	Type	Classification
MsaG007039	TF	NF-YC

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000391	MsaG007039	0.810351	2.058657e-50	3.545917e-48
MsaG001021	MsaG007039	0.818730	2.937619e-52	6.248391e-50
MsaG001022	MsaG007039	0.818127	4.017662e-52	8.413394e-50
MsaG001369	MsaG007039	0.810178	2.243245e-50	3.847334e-48
MsaG007039	MsaG027128	0.816556	9.035762e-52	1.817086e-49
MsaG007039	MsaG033029	0.801912	1.207599e-48	1.704938e-46
MsaG007039	MsaG037803	0.805323	2.385594e-49	3.643940e-47
MsaG007039	MsaG045049	0.809817	2.680457e-50	4.557341e-48
MsaG007039	MsaG045360	0.801910	1.208845e-48	1.706605e-46
MsaG007039	MsaG046060	0.817384	5.901305e-52	1.212355e-49
MsaG007039	MsaG010582	0.820667	1.066123e-52	2.386407e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007039	MtrunA17_Chr2g0288481	85.214	257	25	3	1	257	1	244	3.10e-149	416
MsaG007039	MtrunA17_Chr7g0272991	48.370	184	88	6	69	251	82	259	2.97e-51	168
MsaG007039	MtrunA17_Chr2g0310741	53.947	152	54	4	70	217	85	224	4.35e-50	165
MsaG007039	MtrunA17_Chr8g0376351	88.372	86	9	1	106	190	1	86	2.04e-48	155
MsaG007039	MtrunA17_Chr1g0191681	50.602	166	67	6	69	230	82	236	3.15e-48	160
MsaG007039	MtrunA17_Chr3g0132191	50.336	149	58	2	70	218	37	169	8.68e-43	145
MsaG007039	MtrunA17_Chr2g0318881	58.442	77	31	1	89	164	23	99	3.48e-23	91.3
MsaG007039	MtrunA17_Chr2g0318921	58.442	77	31	1	89	164	23	99	3.82e-23	90.9
MsaG007039	MtrunA17_Chr3g0081161	42.308	78	45	0	89	166	9	86	3.35e-12	65.1
MsaG007039	MtrunA17_Chr8g0354151	39.744	78	47	0	89	166	9	86	1.27e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007039	AT1G54830.2	52.500	160	70	3	69	224	51	208	4.50e-49	161
MsaG007039	AT1G54830.3	52.500	160	70	3	69	224	51	208	4.50e-49	161
MsaG007039	AT1G54830.1	52.500	160	70	3	69	224	51	208	4.50e-49	161
MsaG007039	AT1G08970.3	51.765	170	65	6	70	237	62	216	1.17e-47	158
MsaG007039	AT1G08970.4	51.765	170	65	6	70	237	62	216	1.17e-47	158
MsaG007039	AT1G08970.2	51.765	170	65	6	70	237	62	216	1.17e-47	158
MsaG007039	AT1G08970.1	51.765	170	65	6	70	237	62	216	1.17e-47	158
MsaG007039	AT1G56170.1	57.812	128	49	3	67	192	55	179	3.85e-47	155
MsaG007039	AT1G56170.2	57.812	128	49	3	67	192	55	179	3.85e-47	155
MsaG007039	AT3G48590.1	51.678	149	63	2	70	218	47	186	6.50e-46	154
MsaG007039	AT5G63470.2	56.250	128	53	1	70	194	60	187	1.03e-43	149
MsaG007039	AT5G63470.1	56.250	128	53	1	70	194	60	187	1.03e-43	149
MsaG007039	AT5G50480.1	46.250	160	69	5	66	223	35	179	1.68e-37	131
MsaG007039	AT5G27910.1	42.012	169	77	6	65	231	16	165	8.78e-32	115
MsaG007039	AT5G50490.1	45.192	104	54	1	65	168	16	116	1.39e-25	99.8
MsaG007039	AT5G50470.1	41.085	129	67	2	70	192	48	173	1.10e-24	98.2
MsaG007039	AT5G38140.1	39.806	103	60	1	63	165	44	144	1.34e-21	89.7

Find 53 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGTGCTTAATCTTCTGAATT+TGG	0.149271	2:+13035070	None:intergenic
ATCTTCTTAATCCTTGTTAA+AGG	0.176954	2:+13035559	None:intergenic
ATTGGGACACTTTCTCTTCT+TGG	0.187927	2:+13035292	None:intergenic
AATGGAGCGTGACATATTTA+TGG	0.230451	2:-13035320	MsaT007039.1:CDS
GGCGAGGCACTGATACTATT+TGG	0.252757	2:+13035758	None:intergenic
TGGTCCTCCAAGAATGCTTA+TGG	0.263320	2:-13035200	MsaT007039.1:CDS
GGCATGTGAAATGTTTATTA+TGG	0.268895	2:-13035476	MsaT007039.1:CDS
TGTCTTCCCATAAGCATTCT+TGG	0.296015	2:+13035193	None:intergenic
GTTGTCGGTGAGAGATTTCT+TGG	0.314048	2:+13035677	None:intergenic
GAATTTGGCAAATCAGTAGA+AGG	0.372595	2:+13035085	None:intergenic
GTGCCACCTCAGTATGTTGC+AGG	0.380885	2:-13035232	MsaT007039.1:CDS
TAATAAGGAACATTCCCTAT+TGG	0.390711	2:+13035274	None:intergenic
ACAGACATAGGCAGATAATA+AGG	0.391390	2:+13035259	None:intergenic
GGAAACATTTGATTTGCAAA+AGG	0.397276	2:+13035130	None:intergenic
AATAAGGAACATTCCCTATT+GGG	0.400669	2:+13035275	None:intergenic
CCCGTTGTAAGGAGGTTGAT+TGG	0.412220	2:+13035165	None:intergenic
AGAAGAGAAAGTGTCCCAAT+AGG	0.412571	2:-13035289	MsaT007039.1:CDS
GAAACATTTGATTTGCAAAA+GGG	0.424540	2:+13035131	None:intergenic
ACTGTTGATTTCAAAAGTAA+TGG	0.437192	2:-13035586	MsaT007039.1:CDS
ATGGAGCGTGACATATTTAT+GGG	0.438860	2:-13035319	MsaT007039.1:CDS
GAAGAGAAAGTGTCCCAATA+GGG	0.454022	2:-13035288	MsaT007039.1:CDS
TCTACTCAGGTATGATGAAA+AGG	0.465576	2:+13035708	None:intergenic
GGTCCTCCAAGAATGCTTAT+GGG	0.469493	2:-13035199	MsaT007039.1:CDS
CCGTTGTAAGGAGGTTGATT+GGG	0.477387	2:+13035166	None:intergenic
CCAATCAACCTCCTTACAAC+GGG	0.477395	2:-13035165	MsaT007039.1:CDS
CATGCCTTAGCAAACAGAAT+AGG	0.486382	2:+13035493	None:intergenic
CCTAGTTGATATTGTCCCTA+GGG	0.487741	2:-13035350	MsaT007039.1:CDS
TGGAGCTAGCAACAAGGTCA+TGG	0.501489	2:-13035456	MsaT007039.1:CDS
CCCTAGGGACAATATCAACT+AGG	0.511793	2:+13035350	None:intergenic
TGTGATGGATGCCCGTTGTA+AGG	0.514096	2:+13035154	None:intergenic
TATGTTGCAGGTCCATCATA+TGG	0.515120	2:-13035220	MsaT007039.1:CDS
CTTGGAGTTGAACTCTACTC+AGG	0.515545	2:+13035695	None:intergenic
AAGATCATGAAAGCAGAAGA+AGG	0.528329	2:-13035541	MsaT007039.1:CDS
GGCACCTATTCTGTTTGCTA+AGG	0.530640	2:-13035497	MsaT007039.1:CDS
TGATTTGCAAAAGGGTGTGA+TGG	0.553637	2:+13035139	None:intergenic
TCCTAGTTGATATTGTCCCT+AGG	0.558927	2:-13035351	MsaT007039.1:CDS
CTTCCCATAAGCATTCTTGG+AGG	0.580142	2:+13035196	None:intergenic
GTACTTGCAGTGTGAAACAA+AGG	0.581978	2:+13035736	None:intergenic
GGAGCTAGCAACAAGGTCAT+GGG	0.582315	2:-13035455	MsaT007039.1:CDS
CCCAATCAACCTCCTTACAA+CGG	0.599569	2:-13035166	MsaT007039.1:CDS
ATTCTTGGAGGACCATATGA+TGG	0.609961	2:+13035208	None:intergenic
GTAATGGCTTACCTTTAACA+AGG	0.611130	2:-13035570	MsaT007039.1:CDS
TACTTGCAGTGTGAAACAAA+GGG	0.618670	2:+13035737	None:intergenic
GGTGGCACATGAACAGACAT+AGG	0.629233	2:+13035247	None:intergenic
AAGGTCATGGGCTAATACAG+AGG	0.637560	2:-13035443	MsaT007039.1:CDS
GCAGTGTGAAACAAAGGGCG+AGG	0.647228	2:+13035742	None:intergenic
AATTTGGCAAATCAGTAGAA+GGG	0.648246	2:+13035086	None:intergenic
GATGGATGCCCGTTGTAAGG+AGG	0.657482	2:+13035157	None:intergenic
AGTGAGTATGATATCAGCTG+AGG	0.690629	2:-13035518	MsaT007039.1:CDS
TTATTATGGAGCTAGCAACA+AGG	0.697305	2:-13035462	MsaT007039.1:CDS
GGACCTGCAACATACTGAGG+TGG	0.712994	2:+13035229	None:intergenic
GATGGACCTGCAACATACTG+AGG	0.735823	2:+13035226	None:intergenic
AAAGACACAAGTGAACCCAG+AGG	0.809094	2:-13035818	MsaT007039.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	13035075	13035848	13035075	ID=MsaG007039
Chr2	mRNA	13035075	13035848	13035075	ID=MsaT007039.1;Parent=MsaG007039
Chr2	exon	13035075	13035848	13035075	ID=MsaT007039.1.exon1;Parent=MsaT007039.1
Chr2	CDS	13035075	13035848	13035075	ID=cds.MsaT007039.1;Parent=MsaT007039.1

Gene Sequence

>MsaT007039.1

ATGGATCAAAAGACACAAGTGAACCCAGAGGAAAAAAGGAATGATACACCAACACAAAATCAATCAAACCAAATAGTATCAGTGCCTCGCCCTTTGTTTCACACTGCAAGTACTTCTGCCTTTTCATCATACCTGAGTAGAGTTCAACTCCAAGAAATCTCTCACCGACAACAAAAACAACAAGAATTGCAGAAAAAACTTGGCACCTTCTGGGCAAAACAAAATGAAGAAGTTCAGAAGACTGTTGATTTCAAAAGTAATGGCTTACCTTTAACAAGGATTAAGAAGATCATGAAAGCAGAAGAAGGAGTGAGTATGATATCAGCTGAGGCACCTATTCTGTTTGCTAAGGCATGTGAAATGTTTATTATGGAGCTAGCAACAAGGTCATGGGCTAATACAGAGGTGAACAAAAGAAAGACACTTCAAAAGAGTGACATTGCATCTGCTGTCTCAAGTAATGAAGTGTTTGATTTCCTAGTTGATATTGTCCCTAGGGAAAAAACAATGGAGCGTGACATATTTATGGGTATACCAAGAAGAGAAAGTGTCCCAATAGGGAATGTTCCTTATTATCTGCCTATGTCTGTTCATGTGCCACCTCAGTATGTTGCAGGTCCATCATATGGTCCTCCAAGAATGCTTATGGGAAGACATCTTCCCAATCAACCTCCTTACAACGGGCATCCATCACACCCTTTTGCAAATCAAATGTTTCCAATCCCAAAGAAAGAAAACGACCCTTCTACTGATTTGCCAAATTCAGAAGATTAA

Protein sequence

>MsaT007039.1

MDQKTQVNPEEKRNDTPTQNQSNQIVSVPRPLFHTASTSAFSSYLSRVQLQEISHRQQKQQELQKKLGTFWAKQNEEVQKTVDFKSNGLPLTRIKKIMKAEEGVSMISAEAPILFAKACEMFIMELATRSWANTEVNKRKTLQKSDIASAVSSNEVFDFLVDIVPREKTMERDIFMGIPRRESVPIGNVPYYLPMSVHVPPQYVAGPSYGPPRMLMGRHLPNQPPYNGHPSHPFANQMFPIPKKENDPSTDLPNSED*