AlfalfaGEDB | MsaG007071

M. sativa ssp. caerulea / MsaG007071

KEGG: K20716
GO: GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007071	XP_024631685.1	85.635	362	20	2	1	330	1	362	0.0	597

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007071	sp\|Q9ZVP5\|M3K18_ARATH	42.442	344	143	12	4	298	2	339	1.42e-77	244

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007071	tr\|A0A396J874\|A0A396J874_MEDTR	85.635	362	20	2	1	330	1	362	0.0	597

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000238	MsaG007071	0.801581	1.411041e-48	1.977170e-46
MsaG000366	MsaG007071	0.825067	1.017895e-53	2.565282e-51
MsaG000530	MsaG007071	0.886754	5.632869e-72	1.406681e-68
MsaG000641	MsaG007071	0.811678	1.065410e-50	1.895586e-48
MsaG000690	MsaG007071	0.849476	5.993848e-60	3.191387e-57
MsaG000702	MsaG007071	0.821187	8.102091e-53	1.838882e-50
MsaG000856	MsaG007071	0.806221	1.548788e-49	2.416207e-47
MsaG001403	MsaG007071	0.807739	7.417309e-50	1.199534e-47
MsaG001809	MsaG007071	0.815564	1.501392e-51	2.944017e-49
MsaG002170	MsaG007071	0.800552	2.284801e-48	3.128008e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007071	MtrunA17_Chr2g0288841	85.635	362	20	2	1	330	1	362	0.0	597
MsaG007071	MtrunA17_Chr2g0322401	43.417	357	149	10	1	311	1	350	8.00e-85	261
MsaG007071	MtrunA17_Chr4g0025041	40.462	346	151	12	5	305	3	338	4.81e-75	236
MsaG007071	MtrunA17_Chr8g0375141	36.176	340	168	11	2	296	39	374	1.31e-54	182
MsaG007071	MtrunA17_Chr4g0052981	35.693	339	167	11	4	296	2	335	5.33e-54	180
MsaG007071	MtrunA17_Chr4g0052961	35.988	339	166	12	4	296	39	372	1.93e-53	179
MsaG007071	MtrunA17_Chr5g0402091	34.659	352	174	11	3	298	2	353	5.34e-53	178
MsaG007071	MtrunA17_Chr5g0402111	37.931	261	121	7	4	223	2	262	4.07e-48	164
MsaG007071	MtrunA17_Chr2g0276831	30.363	303	144	7	4	241	9	309	3.29e-39	142
MsaG007071	MtrunA17_Chr7g0272841	32.153	339	167	10	5	291	68	395	7.56e-38	142

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007071	AT1G05100.1	42.442	344	143	12	4	298	2	339	1.45e-78	244
MsaG007071	AT2G32510.1	45.296	287	111	7	4	245	2	287	7.16e-77	240
MsaG007071	AT5G55090.1	39.143	350	162	7	3	303	4	351	3.61e-71	228
MsaG007071	AT5G55090.2	39.143	350	162	7	3	303	66	413	1.76e-70	228
MsaG007071	AT4G26890.1	40.761	368	159	12	1	319	1	358	9.98e-69	221
MsaG007071	AT3G50310.1	33.994	353	161	10	4	296	2	342	1.74e-48	166
MsaG007071	AT5G67080.1	34.551	356	157	11	4	296	2	344	3.87e-48	165
MsaG007071	AT4G36950.1	34.897	341	168	11	4	296	2	336	2.29e-42	150
MsaG007071	AT1G07150.2	34.493	345	175	12	5	308	9	343	2.09e-39	145
MsaG007071	AT1G07150.1	34.493	345	175	12	5	308	23	357	2.16e-39	145

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Find 82 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTTGAATTCTGTTCCG+TGG	0.557726	2:+13461779	None:intergenic
AAATGGAATTGAAGAAGCTA+TGG	0.545578	2:-13462394	MsaT007071.1:CDS
AACGTGTTGGTGACAGAACA+AGG	0.582048	2:-13462288	MsaT007071.1:CDS
AATTTGTGGACACTTTAACT+TGG	0.509208	2:+13462524	None:intergenic
ACATACTTTCTAATATGTCA+AGG	0.555873	2:-13462695	None:intergenic
ACCAATCCGATACAAAACCG+CGG	0.738063	2:+13462072	None:intergenic
ACCACCGACCACCTCTCATT+TGG	0.399250	2:+13461968	None:intergenic
ACCGGCTTTCATGGCACCGG+AGG	0.600270	2:-13462202	MsaT007071.1:intron
ACCTCCGGTGCCATGAAAGC+CGG	0.515758	2:+13462201	None:intergenic
ACGATCAGCTACATAAACGG+TGG	0.730010	2:+13462632	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	13461528	13462703	13461528	ID=MsaG007071
Chr2	mRNA	13461528	13462703	13461528	ID=MsaT007071.1;Parent=MsaG007071
Chr2	exon	13461528	13461553	13461528	ID=MsaT007071.1.exon3;Parent=MsaT007071.1
Chr2	CDS	13461528	13461553	13461528	ID=cds.MsaT007071.1;Parent=MsaT007071.1
Chr2	exon	13461633	13462110	13461633	ID=MsaT007071.1.exon2;Parent=MsaT007071.1
Chr2	CDS	13461633	13462110	13461633	ID=cds.MsaT007071.1;Parent=MsaT007071.1
Chr2	exon	13462203	13462703	13462203	ID=MsaT007071.1.exon1;Parent=MsaT007071.1
Chr2	CDS	13462203	13462703	13462203	ID=cds.MsaT007071.1;Parent=MsaT007071.1

Gene Sequence

>MsaT007071.1

ATGTCAAGGGATTGGTCTAGAGGCAGAATCATCGGCAGTGGCTCGACTGCCACCGTTTATGTAGCTGATCGTTGCCATTCTGGTGGTGAAGTGTTTGCGGTGAAGTCTACGGAGCTTCACCGCTCGGAGTTATTGAAGAAAGAACAACAGATTCTCTCCAAGTTAAAGTGTCCACAAATTGTGAGCTACCAAGGTTGTGAAGTCACCTTTGAAAATGGTGTTCAATTGTTCAACTTGTTCATGGAGTATGCACCTAAGGGAACTGTTTCTGATGCAGTTCGCAAAGGAAATGGAATTGAAGAAGCTATGGTGGCATTCTATGCACGTCAAATTCTGCTAGGGCTTGACTATCTTCATTTGAATGGGATAGTGCATTGTGATTTGAAGGGACAGAACGTGTTGGTGACAGAACAAGGTGTGAAAATTGCGGATTTTGGTTGTGCTAGGAGGGTGGGAGAGGAGTTGGTGATTTCTGGTACACCGGCTTTCATGGCACCGGAGGGTTTTTCTGACCCTGCCGCGGTTTTGTATCGGATTGGTTTCTCTGGCGATGTGCCAGAGATTCCTGATTATGTTTCTGAACAAGGGAAGGATTTTTTGAGAAAATGTTTGAAGAGAGATCCAAATGAGAGGTGGTCGGTGGTTGATCTTCTTGGACATGAGTTTGTTGGGAAGTTTAAGGACTCAGTGTTTGATTCAGAAACTCCAACGACTGTGTTGGAAGGAGGATTTTGGGATTGGGATTCTTTGGAAACAACTCAAGAAGTAGGTCCCACACTTGAATGTAGTTGTTCCTCGGATTCTTCGAGTCCACGGAACAGAATTCAAAGTTTGTGTTCTGATGAGGCTTTTTGGGAATCTGATGATGATGAATGGGTTACAGTAAGAAGCAATGGTGAGGAGTTGAATGCATTGTCATTTGAAGAAATTGAAGATTATGAATTAGACATTGTTTGTGAACTTGATGATCATGAGATTAAAGCTGCAATTGTGGCTTTTGTGTAA

Protein sequence

>MsaT007071.1

MSRDWSRGRIIGSGSTATVYVADRCHSGGEVFAVKSTELHRSELLKKEQQILSKLKCPQIVSYQGCEVTFENGVQLFNLFMEYAPKGTVSDAVRKGNGIEEAMVAFYARQILLGLDYLHLNGIVHCDLKGQNVLVTEQGVKIADFGCARRVGEELVISGTPAFMAPEGFSDPAAVLYRIGFSGDVPEIPDYVSEQGKDFLRKCLKRDPNERWSVVDLLGHEFVGKFKDSVFDSETPTTVLEGGFWDWDSLETTQEVGPTLECSCSSDSSSPRNRIQSLCSDEAFWESDDDEWVTVRSNGEELNALSFEEIEDYELDIVCELDDHEIKAAIVAFV*