AlfalfaGEDB | MsaG007094

M. sativa ssp. caerulea / MsaG007094

KEGG: K13425
GO: GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019932 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033993 GO:0035556 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF03106.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007094	XP_024632663.2	53.115	305	48	3	1	210	165	469	9.59e-95	294

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007094	sp\|Q9FLX8\|WRK27_ARATH	58.333	60	24	1	64	123	143	201	4.69e-17	81.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007094	tr\|A0A072V4M0\|A0A072V4M0_MEDTR	53.115	305	48	3	1	210	165	469	4.58e-95	294

TFs/TRs:

Gene ID	Type	Classification
MsaG007094	TF	WRKY

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000379	MsaG007094	0.807302	9.175713e-50	1.468426e-47
MsaG000583	MsaG007094	0.913024	2.441175e-83	2.816906e-79
MsaG002065	MsaG007094	0.834242	6.102609e-56	1.998265e-53
MsaG002731	MsaG007094	0.847374	2.273819e-59	1.127475e-56
MsaG004227	MsaG007094	0.805956	1.759923e-49	2.728285e-47
MsaG004186	MsaG007094	0.824909	1.108302e-53	2.781107e-51
MsaG004306	MsaG007094	0.804733	3.165384e-49	4.769298e-47
MsaG004921	MsaG007094	0.805249	2.471968e-49	3.769362e-47
MsaG004993	MsaG007094	0.801582	1.410690e-48	1.976689e-46
MsaG005052	MsaG007094	0.841799	7.088598e-58	2.928866e-55
MsaG005282	MsaG007094	0.824897	1.116056e-53	2.799549e-51
MsaG005288	MsaG007094	0.825979	6.204637e-54	1.603661e-51
MsaG005559	MsaG007094	0.819543	1.922953e-52	4.178249e-50
MsaG005942	MsaG007094	0.837441	9.515085e-57	3.430635e-54
MsaG005948	MsaG007094	0.800163	2.740068e-48	3.718313e-46
MsaG006195	MsaG007094	0.801899	1.215077e-48	1.715009e-46
MsaG006743	MsaG007094	0.812074	8.743852e-51	1.570873e-48
MsaG006909	MsaG007094	0.801344	1.577202e-48	2.198183e-46
MsaG006910	MsaG007094	0.803175	6.650588e-49	9.665184e-47
MsaG006937	MsaG007094	0.824751	1.207450e-53	3.016662e-51
MsaG007094	MsaG007318	0.810151	2.272824e-50	3.895595e-48
MsaG007094	MsaG008019	0.814582	2.473774e-51	4.731727e-49
MsaG007094	MsaG008148	0.847581	1.995393e-59	9.963767e-57
MsaG007094	MsaG009004	0.802408	9.556228e-49	1.364591e-46
MsaG007094	MsaG009495	0.848444	1.156355e-59	5.943070e-57
MsaG007094	MsaG009548	0.831614	2.726837e-55	8.267445e-53
MsaG007094	MsaG010314	0.808909	4.188024e-50	6.966269e-48
MsaG007094	MsaG010621	0.814051	3.237559e-51	6.110736e-49
MsaG007094	MsaG010622	0.803336	6.161323e-49	8.987452e-47
MsaG007094	MsaG011049	0.816240	1.062593e-51	2.119727e-49
MsaG007094	MsaG011133	0.883670	7.894055e-71	1.695484e-67
MsaG007094	MsaG011407	0.809067	3.876052e-50	6.471967e-48
MsaG007094	MsaG011587	0.804195	4.092683e-49	6.090136e-47
MsaG007094	MsaG011601	0.817999	4.293799e-52	8.962163e-50
MsaG007094	MsaG011621	0.803088	6.928578e-49	1.004921e-46
MsaG007094	MsaG012425	0.809212	3.609570e-50	6.047758e-48
MsaG007094	MsaG013179	0.803591	5.457472e-49	8.007854e-47
MsaG007094	MsaG013177	0.869019	8.583378e-66	9.547393e-63
MsaG007094	MsaG013265	0.824983	1.064989e-53	2.677781e-51
MsaG007094	MsaG013272	0.800027	2.919401e-48	3.949652e-46
MsaG007094	MsaG013426	0.834807	4.408442e-56	1.468161e-53
MsaG007094	MsaG013427	0.808361	5.476690e-50	8.990062e-48
MsaG007094	MsaG014356	0.838041	6.686918e-57	2.455544e-54
MsaG007094	MsaG015329	0.802058	1.127354e-48	1.596908e-46
MsaG007094	MsaG015347	0.821921	5.493238e-53	1.271237e-50
MsaG007094	MsaG015352	0.808019	6.470565e-50	1.053512e-47
MsaG007094	MsaG016229	0.823710	2.114916e-53	5.136663e-51
MsaG007094	MsaG016474	0.833562	9.013453e-56	2.892678e-53
MsaG007094	MsaG016671	0.839935	2.173285e-57	8.466810e-55
MsaG007094	MsaG016972	0.824425	1.439517e-53	3.564701e-51
MsaG007094	MsaG017085	0.813205	4.959461e-51	9.164606e-49
MsaG007094	MsaG017179	0.800454	2.392536e-48	3.268209e-46
MsaG007094	MsaG017267	0.803011	7.186527e-49	1.040467e-46
MsaG007094	MsaG017393	0.805961	1.755619e-49	2.721910e-47
MsaG007094	MsaG017569	0.824375	1.479096e-53	3.657826e-51
MsaG007094	MsaG017679	0.835484	2.979143e-56	1.012500e-53
MsaG007094	MsaG018468	0.821530	6.759628e-53	1.548121e-50
MsaG007094	MsaG018427	0.805501	2.190542e-49	3.359731e-47
MsaG007094	MsaG018642	0.837489	9.249877e-57	3.339988e-54
MsaG007094	MsaG018669	0.864863	1.787015e-64	1.679170e-61
MsaG007094	MsaG018705	0.825172	9.612385e-54	2.429500e-51
MsaG007094	MsaG018847	0.820413	1.218685e-52	2.709787e-50
MsaG007094	MsaG019353	0.806201	1.563767e-49	2.438406e-47
MsaG007094	MsaG020017	0.800161	2.742527e-48	3.721479e-46
MsaG007094	MsaG020567	0.842588	4.390983e-58	1.860776e-55
MsaG007094	MsaG020778	0.818247	3.775142e-52	7.929924e-50
MsaG007094	MsaG021418	0.827943	2.114450e-54	5.773057e-52
MsaG007094	MsaG022216	0.810750	1.690227e-50	2.939636e-48
MsaG007094	MsaG022820	0.806850	1.142611e-49	1.809092e-47
MsaG007094	MsaG022824	0.822733	3.566695e-53	8.436368e-51
MsaG007094	MsaG024152	0.804297	3.898152e-49	5.814480e-47
MsaG007094	MsaG024586	0.852568	8.127477e-61	4.815989e-58
MsaG007094	MsaG025262	0.805580	2.108200e-49	3.239516e-47
MsaG007094	MsaG025404	0.805231	2.494009e-49	3.801420e-47
MsaG007094	MsaG025797	0.867592	2.462073e-65	2.583036e-62
MsaG007094	MsaG026926	0.809472	3.175859e-50	5.355006e-48
MsaG007094	MsaG027046	0.832094	2.078655e-55	6.391236e-53
MsaG007094	MsaG027329	0.853381	4.771125e-61	2.909475e-58
MsaG007094	MsaG027808	0.851101	2.109737e-60	1.187669e-57
MsaG007094	MsaG027970	0.870580	2.671145e-66	3.171282e-63
MsaG007094	MsaG027999	0.848616	1.036779e-59	5.360139e-57
MsaG007094	MsaG028180	0.815542	1.518434e-51	2.975718e-49
MsaG007094	MsaG028507	0.834588	4.999800e-56	1.654311e-53
MsaG007094	MsaG028931	0.851638	1.490303e-60	8.546770e-58
MsaG007094	MsaG028988	0.828881	1.258498e-54	3.527756e-52
MsaG007094	MsaG030080	0.801666	1.355881e-48	1.903572e-46
MsaG007094	MsaG030113	0.818237	3.795206e-52	7.970050e-50
MsaG007094	MsaG031491	0.818344	3.589522e-52	7.559025e-50
MsaG007094	MsaG031752	0.810371	2.038281e-50	3.512521e-48
MsaG007094	MsaG032378	0.833358	1.012333e-55	3.229484e-53
MsaG007094	MsaG032433	0.819029	2.514172e-52	5.390009e-50
MsaG007094	MsaG033125	0.869488	6.053398e-66	6.865541e-63
MsaG007094	MsaG033713	0.807195	9.663073e-50	1.542517e-47
MsaG007094	MsaG034529	0.805341	2.365196e-49	3.614277e-47
MsaG007094	MsaG035300	0.814983	2.017791e-51	3.898950e-49
MsaG007094	MsaG036128	0.810992	1.498845e-50	2.622258e-48
MsaG007094	MsaG036294	0.819690	1.780715e-52	3.884165e-50
MsaG007094	MsaG036529	0.807511	8.287837e-50	1.333000e-47
MsaG007094	MsaG036699	0.827624	2.521334e-54	6.822565e-52
MsaG007094	MsaG037763	0.820835	9.759925e-53	2.194379e-50
MsaG007094	MsaG040482	0.801991	1.163306e-48	1.645335e-46
MsaG007094	MsaG041706	0.832541	1.612925e-55	5.023654e-53
MsaG007094	MsaG041979	0.852515	8.416844e-61	4.977852e-58
MsaG007094	MsaG041980	0.844462	1.393777e-58	6.274196e-56
MsaG007094	MsaG043330	0.832091	2.081485e-55	6.399575e-53
MsaG007094	MsaG044963	0.833055	1.203661e-55	3.805773e-53
MsaG007094	MsaG045800	0.815721	1.385448e-51	2.727557e-49
MsaG007094	MsaG046276	0.803705	5.170268e-49	7.606593e-47
MsaG007094	MsaG047079	0.879607	2.287307e-69	4.054603e-66
MsaG007094	MsaG002852	0.828441	1.606691e-54	4.448557e-52
MsaG007094	MsaG003580	0.859651	7.002995e-63	5.372943e-60
MsaG007094	MsaG002306	0.813116	5.185952e-51	9.561874e-49
MsaG007094	MsaG008748	0.844242	1.595720e-58	7.132346e-56
MsaG007094	MsaG009514	0.826073	5.893274e-54	1.527178e-51
MsaG007094	MsaG007894	0.851421	1.715528e-60	9.764232e-58
MsaG007094	MsaG013383	0.813085	5.267038e-51	9.703998e-49
MsaG007094	MsaG015407	0.808819	4.377655e-50	7.265909e-48
MsaG007094	MsaG013515	0.802430	9.460426e-49	1.351545e-46
MsaG007094	MsaG013255	0.814437	2.662718e-51	5.074914e-49
MsaG007094	MsaG013398	0.814281	2.880962e-51	5.469422e-49
MsaG007094	MsaG020544	0.809272	3.504202e-50	5.879722e-48
MsaG007094	MsaG028085	0.801244	1.652678e-48	2.298105e-46
MsaG007094	MsaG026617	0.884632	3.491228e-71	7.852207e-68
MsaG007094	MsaG033538	0.826082	5.864633e-54	1.520141e-51
MsaG007094	MsaG034300	0.813729	3.809543e-51	7.132594e-49
MsaG007094	MsaG031458	0.802262	1.023791e-48	1.456999e-46
MsaG007094	MsaG030191	0.821769	5.956486e-53	1.372842e-50
MsaG007094	MsaG031339	0.807130	9.973835e-50	1.589667e-47
MsaG007094	MsaG032719	0.867036	3.700080e-65	3.795098e-62
MsaG007094	MsaG031412	0.818049	4.183469e-52	8.742920e-50
MsaG007094	MsaG031897	0.816712	8.340709e-52	1.684063e-49
MsaG007094	MsaG037043	0.804315	3.865017e-49	5.767322e-47
MsaG007094	MsaG036456	0.802764	8.078476e-49	1.162953e-46
MsaG007094	MsaG035260	0.813964	3.382869e-51	6.371342e-49
MsaG007094	MsaG037375	0.828218	1.817062e-54	4.999467e-52
MsaG007094	MsaG037635	0.835086	3.752649e-56	1.260235e-53
MsaG007094	MsaG038165	0.833822	7.766225e-56	2.511460e-53
MsaG007094	MsaG037187	0.823196	2.785023e-53	6.670311e-51
MsaG007094	MsaG036790	0.804773	3.105904e-49	4.683962e-47
MsaG007094	MsaG037387	0.887249	3.659404e-72	9.369894e-69
MsaG007094	MsaG047167	0.818106	4.061610e-52	8.500909e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007094	MtrunA17_Chr2g0289181	44.589	231	33	3	75	210	2	232	8.36e-55	174
MsaG007094	MtrunA17_Chr1g0202461	60.000	60	23	1	64	123	239	297	2.74e-19	84.7
MsaG007094	MtrunA17_Chr7g0248691	49.275	69	35	0	55	123	122	190	8.82e-18	80.1
MsaG007094	MtrunA17_Chr6g0470161	44.318	88	49	0	123	210	32	119	1.12e-17	75.5
MsaG007094	MtrunA17_Chr8g0348311	55.738	61	23	1	63	123	135	191	1.06e-16	77.0
MsaG007094	MtrunA17_Chr2g0284321	50.746	67	29	1	61	123	5	71	3.25e-16	74.3
MsaG007094	MtrunA17_Chr5g0401821	42.308	78	38	1	80	150	192	269	2.85e-15	72.4
MsaG007094	MtrunA17_Chr8g0379461	71.053	38	11	0	88	125	77	114	4.15e-15	71.6
MsaG007094	MtrunA17_Chr2g0319961	44.000	75	33	1	60	125	44	118	7.62e-15	71.2
MsaG007094	MtrunA17_Chr7g0270051	46.970	66	28	1	65	123	24	89	1.30e-14	70.5
MsaG007094	MtrunA17_Chr4g0053281	46.053	76	33	2	80	152	259	329	1.35e-14	71.2
MsaG007094	MtrunA17_Chr1g0184691	66.667	39	13	0	84	122	290	328	1.71e-14	71.2
MsaG007094	MtrunA17_Chr6g0470151	38.843	121	59	4	5	110	233	353	2.01e-14	70.9
MsaG007094	MtrunA17_Chr1g0147881	66.667	39	13	0	84	122	259	297	3.59e-14	70.1
MsaG007094	MtrunA17_Chr7g0228941	46.552	58	26	1	81	138	46	98	4.99e-14	66.2
MsaG007094	MtrunA17_Chr8g0387501	33.871	124	77	2	2	125	49	167	6.54e-14	68.9
MsaG007094	MtrunA17_Chr2g0293481	44.156	77	30	2	60	123	227	303	8.84e-14	69.3
MsaG007094	MtrunA17_Chr3g0139021	40.541	74	38	2	66	138	292	360	1.40e-13	68.6
MsaG007094	MtrunA17_Chr4g0071521	64.103	39	14	0	84	122	242	280	2.77e-13	67.4
MsaG007094	MtrunA17_Chr7g0266611	50.000	88	43	1	123	210	78	164	3.55e-13	65.1
MsaG007094	MtrunA17_Chr5g0447701	47.059	68	32	2	83	150	88	151	2.24e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007094	AT5G52830.1	58.333	60	24	1	64	123	143	201	4.77e-18	81.6
MsaG007094	AT4G01250.1	54.237	59	27	0	65	123	106	164	4.37e-17	78.2
MsaG007094	AT5G45050.4	45.882	85	40	2	54	138	1009	1087	1.89e-16	77.8
MsaG007094	AT5G45050.2	45.882	85	40	2	54	138	1120	1198	2.01e-16	77.8
MsaG007094	AT5G45050.1	45.882	85	40	2	54	138	1148	1226	2.03e-16	77.8
MsaG007094	AT4G23550.1	58.491	53	22	0	71	123	124	176	3.14e-16	75.9
MsaG007094	AT1G29280.1	48.571	70	27	1	63	123	41	110	1.62e-15	73.6
MsaG007094	AT4G31550.1	69.231	39	12	0	84	122	243	281	8.59e-15	72.0
MsaG007094	AT4G31550.2	69.231	39	12	0	84	122	242	280	8.87e-15	72.0
MsaG007094	AT2G24570.1	69.231	39	12	0	84	122	240	278	1.08e-14	71.6
MsaG007094	AT3G58710.2	75.000	36	9	0	88	123	71	106	2.02e-14	70.5
MsaG007094	AT3G58710.1	75.000	36	9	0	88	123	72	107	2.02e-14	70.5
MsaG007094	AT2G23320.1	51.562	64	23	2	88	148	241	299	2.35e-14	70.9
MsaG007094	AT4G24240.1	66.667	39	13	0	84	122	278	316	3.48e-14	70.5
MsaG007094	AT5G28650.1	53.968	63	27	2	84	146	259	319	3.64e-14	70.5
MsaG007094	AT3G04670.1	66.667	39	13	0	84	122	259	297	5.07e-14	70.1
MsaG007094	AT2G30590.1	47.541	61	29	1	65	122	288	348	1.72e-13	68.6
MsaG007094	AT2G34830.2	69.444	36	11	0	88	123	225	260	1.42e-12	66.2
MsaG007094	AT2G34830.1	69.444	36	11	0	88	123	216	251	1.44e-12	66.2
MsaG007094	AT1G30650.1	64.103	39	14	0	85	123	215	253	5.16e-12	64.7
MsaG007094	AT2G38470.1	45.333	75	36	3	71	145	169	238	4.23e-11	62.0

Find 45 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGGATGTGGAGACCCTTTAA+TGG	0.287579	2:-13710432	None:intergenic
ATAAATCCAGTTTCAGAATA+AGG	0.301581	2:-13711313	None:intergenic
TATGGACAGAAACCCATTAA+AGG	0.302088	2:+13710419	MsaT007094.1:CDS
TTCACATAACAACAAGATTA+TGG	0.327717	2:+13711234	MsaT007094.1:CDS
AACTTGCCTTATTCTGAAAC+TGG	0.331215	2:+13711307	MsaT007094.1:CDS
TTGGTTAGATGATTACTTAA+TGG	0.339688	2:+13711384	MsaT007094.1:CDS
CACTAAGCAAATCGAGAAAA+AGG	0.340079	2:+13710187	MsaT007094.1:CDS
TCGTGGGCATGGAGGAAATA+TGG	0.346010	2:+13710401	MsaT007094.1:CDS
GAGTGTTAGGAAATTAAAAT+TGG	0.348469	2:-13710046	None:intergenic
GTTGTTGTTCCGCGAGTGTT+AGG	0.379748	2:-13710059	None:intergenic
GGATGTGGAGACCCTTTAAT+GGG	0.385486	2:-13710431	None:intergenic
TCAATGCAAGCAACAGGTTT+GGG	0.387278	2:-13710117	None:intergenic
ATCAATGCAAGCAACAGGTT+TGG	0.388412	2:-13710118	None:intergenic
ATCCACAAATGTTAGAAACT+TGG	0.408052	2:+13711210	MsaT007094.1:CDS
GTGATATCAATGCAAGCAAC+AGG	0.436672	2:-13710123	None:intergenic
GACCCAGCTTCTTCGACAAC+GGG	0.441727	2:-13711187	None:intergenic
ACCCAAGTTTCTAACATTTG+TGG	0.449992	2:-13711212	None:intergenic
ATGGACAGAAACCCATTAAA+GGG	0.461015	2:+13710420	MsaT007094.1:CDS
TATAGCACACCAATGCCGTT+TGG	0.476487	2:-13710352	None:intergenic
TCCACAAATGTTAGAAACTT+GGG	0.479230	2:+13711211	MsaT007094.1:CDS
TTACCCGTTGTCGAAGAAGC+TGG	0.488577	2:+13711184	MsaT007094.1:CDS
GTTAGGAAATTAAAATTGGT+GGG	0.494516	2:-13710042	None:intergenic
AGCAATGCTCAAGTTGTTGT+CGG	0.499521	2:+13711277	MsaT007094.1:CDS
ATGGACTTCAACCGCCTCAA+TGG	0.514519	2:+13711403	MsaT007094.1:CDS
ACATAATAACCAAACGGCAT+TGG	0.525701	2:+13710343	MsaT007094.1:CDS
TGTTAGGAAATTAAAATTGG+TGG	0.530065	2:-13710043	None:intergenic
TGATAACAAACATAACAGCT+TGG	0.533538	2:+13711365	MsaT007094.1:CDS
CAGAAAACATAATAACCAAA+CGG	0.550138	2:+13710337	MsaT007094.1:intron
AGATTGTCCAGCAAGAAGAA+AGG	0.551728	2:+13710930	MsaT007094.1:CDS
TACCCGTTGTCGAAGAAGCT+GGG	0.554513	2:+13711185	MsaT007094.1:CDS
GAATGTGTGAACCTTGGATG+TGG	0.561410	2:-13710446	None:intergenic
TGACCCAGCTTCTTCGACAA+CGG	0.566165	2:-13711188	None:intergenic
TTTCAAAAGACTCGTGGGCA+TGG	0.568404	2:+13710390	MsaT007094.1:CDS
CTATTACAAATGTAGCACTT+TGG	0.573456	2:+13710906	MsaT007094.1:CDS
TTAGGAAATTAAAATTGGTG+GGG	0.575907	2:-13710041	None:intergenic
ATGAACACTAGTGTTTGTCA+TGG	0.581670	2:-13710004	None:intergenic
GACTTCAACCGCCTCAATGG+TGG	0.595091	2:+13711406	MsaT007094.1:CDS
AGAATAGAGCACCACCATTG+AGG	0.605565	2:-13711417	None:intergenic
GATTTGCTTAGTGCAACTGA+TGG	0.610064	2:-13710177	None:intergenic
TTAAAGGGTCTCCACATCCA+AGG	0.615060	2:+13710435	MsaT007094.1:CDS
TGAGCTTTCAAAAGACTCGT+GGG	0.628685	2:+13710385	MsaT007094.1:CDS
ATGAGCTTTCAAAAGACTCG+TGG	0.638619	2:+13710384	MsaT007094.1:CDS
CAAAAGACTCGTGGGCATGG+AGG	0.669284	2:+13710393	MsaT007094.1:CDS
ATAGAGCACCACCATTGAGG+CGG	0.679111	2:-13711414	None:intergenic
ACTTGAGCATTGCTACTCTG+TGG	0.710623	2:-13711268	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	13710006	13711444	13710006	ID=MsaG007094
Chr2	mRNA	13710006	13711444	13710006	ID=MsaT007094.1;Parent=MsaG007094
Chr2	exon	13710006	13710208	13710006	ID=MsaT007094.1.exon1;Parent=MsaT007094.1
Chr2	CDS	13710006	13710208	13710006	ID=cds.MsaT007094.1;Parent=MsaT007094.1
Chr2	exon	13710340	13710456	13710340	ID=MsaT007094.1.exon2;Parent=MsaT007094.1
Chr2	CDS	13710340	13710456	13710340	ID=cds.MsaT007094.1;Parent=MsaT007094.1
Chr2	exon	13710903	13710951	13710903	ID=MsaT007094.1.exon3;Parent=MsaT007094.1
Chr2	CDS	13710903	13710951	13710903	ID=cds.MsaT007094.1;Parent=MsaT007094.1
Chr2	exon	13711178	13711444	13711178	ID=MsaT007094.1.exon4;Parent=MsaT007094.1
Chr2	CDS	13711178	13711444	13711178	ID=cds.MsaT007094.1;Parent=MsaT007094.1

Gene Sequence

>MsaT007094.1

ATGACAAACACTAGTGTTCATGAAATCAATCAATACCCCACCAATTTTAATTTCCTAACACTCGCGGAACAACAACTGATTCAACAAAACATCAACAATCAAGTGTCTGTTCCCAAACCTGTTGCTTGCATTGATATCACAACCGCTCATTTTTATCATGCATACAAACATCCATCAGTTGCACTAAGCAAATCGAGAAAAAGAAAACATAATAACCAAACGGCATTGGTGTGCTATATGAGAGAAGATGAGCTTTCAAAAGACTCGTGGGCATGGAGGAAATATGGACAGAAACCCATTAAAGGGTCTCCACATCCAAGGAGCTATTACAAATGTAGCACTTTGGCAGATTGTCCAGCAAGAAGAAAGAGTCAATTACCCGTTGTCGAAGAAGCTGGGTCATCCACAAATGTTAGAAACTTGGGTTCACATAACAACAAGATTATGGAGTTTGATGAGCCACAGAGTAGCAATGCTCAAGTTGTTGTCGGTGACTCAAACTTGCCTTATTCTGAAACTGGATTTATTAGAAGCTTTGATGATGATGACAATATTTTGATAACAAACATAACAGCTTGGTTAGATGATTACTTAATGGACTTCAACCGCCTCAATGGTGGTGCTCTATTCTCTTAG

Protein sequence

>MsaT007094.1

MTNTSVHEINQYPTNFNFLTLAEQQLIQQNINNQVSVPKPVACIDITTAHFYHAYKHPSVALSKSRKRKHNNQTALVCYMREDELSKDSWAWRKYGQKPIKGSPHPRSYYKCSTLADCPARRKSQLPVVEEAGSSTNVRNLGSHNNKIMEFDEPQSSNAQVVVGDSNLPYSETGFIRSFDDDDNILITNITAWLDDYLMDFNRLNGGALFS*