AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG007095


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG007095 MtrunA17_Chr2g0289181 88.412 233 27 0 324 556 1 233 2.35e-152 436
MsaG007095 MtrunA17_Chr7g0266611 51.515 165 79 1 392 556 2 165 2.07e-39 141
MsaG007095 MtrunA17_Chr1g0202461 53.061 98 44 2 315 412 240 335 4.94e-29 119
MsaG007095 MtrunA17_Chr6g0470161 44.355 124 64 1 433 556 2 120 6.92e-28 108
MsaG007095 MtrunA17_Chr7g0248691 35.135 185 103 5 305 478 122 300 1.08e-26 110
MsaG007095 MtrunA17_Chr8g0348311 45.370 108 58 1 316 423 134 240 8.89e-26 108
MsaG007095 MtrunA17_Chr1g0184691 65.079 63 22 0 334 396 290 352 6.49e-24 103
MsaG007095 MtrunA17_Chr2g0293481 37.778 135 70 3 288 409 205 338 6.28e-23 102
MsaG007095 MtrunA17_Chr4g0071521 38.655 119 55 2 278 396 204 304 1.85e-22 98.2
MsaG007095 MtrunA17_Chr3g0139021 45.055 91 49 1 313 402 289 379 2.90e-22 99.4
MsaG007095 MtrunA17_Chr4g0053281 47.674 86 42 1 313 395 239 324 4.55e-22 97.8
MsaG007095 MtrunA17_Chr5g0401821 56.061 66 29 0 330 395 192 257 7.71e-22 95.5
MsaG007095 MtrunA17_Chr8g0387501 54.795 73 32 1 338 410 130 201 1.26e-21 95.1
MsaG007095 MtrunA17_Chr7g0228941 56.250 64 28 0 331 394 46 109 1.79e-21 90.1
MsaG007095 MtrunA17_Chr8g0379461 59.677 62 25 0 336 397 75 136 2.02e-21 93.6
MsaG007095 MtrunA17_Chr7g0270051 46.154 91 42 1 315 398 24 114 2.64e-21 94.0
MsaG007095 MtrunA17_Chr1g0147881 43.363 113 56 2 286 394 211 319 4.78e-21 94.7
MsaG007095 MtrunA17_Chr2g0284321 47.253 91 44 1 311 397 5 95 9.23e-21 90.9
MsaG007095 MtrunA17_Chr2g0319961 59.677 62 25 0 336 397 79 140 1.13e-20 92.0
MsaG007095 MtrunA17_Chr8g0366921 51.000 100 35 3 1 92 1 94 1.38e-18 87.0
MsaG007095 MtrunA17_Chr2g0302391 35.345 116 69 1 282 397 162 271 8.11e-18 85.9
MsaG007095 MtrunA17_Chr2g0293901 45.161 186 73 4 1 160 1 183 2.79e-17 80.5
MsaG007095 MtrunA17_Chr3g0099641 50.000 60 30 0 338 397 252 311 3.89e-17 84.3
MsaG007095 MtrunA17_Chr1g0194481 41.111 90 51 2 317 406 139 226 1.42e-16 81.3
MsaG007095 MtrunA17_Chr3g0136961 50.847 59 29 0 337 395 138 196 5.11e-16 79.0
MsaG007095 MtrunA17_Chr7g0263531 48.276 87 43 2 322 408 174 258 1.17e-15 79.3
MsaG007095 MtrunA17_Chr7g0263531 44.444 81 42 2 332 412 356 433 1.45e-14 76.3
MsaG007095 MtrunA17_Chr7g0270831 49.206 63 32 0 335 397 214 276 1.90e-15 79.0
MsaG007095 MtrunA17_Chr6g0470151 50.538 93 40 1 1 87 1 93 2.20e-15 78.2
MsaG007095 MtrunA17_Chr6g0470151 38.211 123 57 4 255 360 233 353 1.80e-14 75.1
MsaG007095 MtrunA17_Chr1g0150271 47.541 61 32 0 337 397 101 161 2.75e-15 75.9
MsaG007095 MtrunA17_Chr4g0051881 46.053 76 39 2 323 398 165 238 2.78e-15 77.4
MsaG007095 MtrunA17_Chr3g0101131 52.308 65 30 1 338 402 416 479 4.01e-15 78.6
MsaG007095 MtrunA17_Chr5g0445311 47.222 72 37 1 326 397 353 423 4.63e-15 78.2
MsaG007095 MtrunA17_Chr4g0042831 49.296 71 35 1 332 402 273 342 4.74e-15 77.0
MsaG007095 MtrunA17_Chr4g0042831 39.796 98 47 3 333 421 141 235 9.78e-11 63.9
MsaG007095 MtrunA17_Chr2g0322391 46.479 71 38 0 338 408 350 420 5.00e-15 78.2
MsaG007095 MtrunA17_Chr7g0218081 53.846 65 29 1 334 398 407 470 6.38e-15 77.4
MsaG007095 MtrunA17_Chr7g0218081 50.704 71 33 2 333 403 224 292 2.85e-14 75.5
MsaG007095 MtrunA17_Chr5g0418191 50.725 69 33 1 334 402 317 384 6.89e-15 77.0
MsaG007095 MtrunA17_Chr5g0418191 52.174 69 31 2 333 401 147 213 1.73e-13 72.8
MsaG007095 MtrunA17_Chr2g0288871 48.333 60 31 0 338 397 306 365 7.85e-15 77.4
MsaG007095 MtrunA17_Chr4g0060271 44.156 77 41 1 323 397 239 315 1.21e-14 77.0
MsaG007095 MtrunA17_Chr4g0075201 48.333 60 31 0 338 397 268 327 1.32e-14 76.6
MsaG007095 MtrunA17_Chr3g0106491 56.250 64 26 2 338 401 199 260 1.94e-14 75.9
MsaG007095 MtrunA17_Chr3g0106491 47.761 67 34 1 332 398 360 425 2.51e-13 72.4
MsaG007095 MtrunA17_Chr4g0025061 43.023 86 47 2 325 408 346 431 2.04e-14 76.3
MsaG007095 MtrunA17_Chr5g0432161 50.746 67 32 1 332 398 416 481 2.05e-14 76.3
MsaG007095 MtrunA17_Chr4g0001361 47.541 61 32 0 337 397 162 222 2.19e-14 74.3
MsaG007095 MtrunA17_Chr3g0079691 49.296 71 34 2 337 407 280 348 2.27e-14 76.3
MsaG007095 MtrunA17_Chr3g0079691 52.459 61 28 1 338 398 496 555 1.57e-13 73.6
MsaG007095 MtrunA17_Chr7g0238921 44.318 88 41 4 324 410 113 193 3.19e-14 73.9
MsaG007095 MtrunA17_Chr4g0025051 45.070 71 39 0 338 408 336 406 3.24e-14 75.5
MsaG007095 MtrunA17_Chr7g0216891 50.877 57 28 0 338 394 220 276 4.00e-14 75.1
MsaG007095 MtrunA17_Chr4g0051181 50.000 60 30 0 338 397 244 303 6.17e-14 74.3
MsaG007095 MtrunA17_Chr4g0068541 40.580 69 40 1 338 406 209 276 7.53e-14 73.6
MsaG007095 MtrunA17_Chr7g0249301 42.268 97 49 3 337 433 62 151 1.00e-13 73.2
MsaG007095 MtrunA17_Chr7g0249301 46.269 67 35 1 332 398 287 352 8.34e-13 70.1
MsaG007095 MtrunA17_Chr7g0249311 50.000 72 34 2 337 408 179 248 1.07e-13 73.9
MsaG007095 MtrunA17_Chr7g0249311 44.156 77 42 1 332 408 387 462 1.31e-13 73.9
MsaG007095 MtrunA17_Chr5g0447701 52.459 61 28 1 338 398 253 312 1.21e-13 72.8
MsaG007095 MtrunA17_Chr5g0447701 51.471 68 31 2 333 400 88 153 1.64e-13 72.4
MsaG007095 MtrunA17_Chr7g0243891 41.935 93 50 3 309 401 190 278 1.73e-13 73.2
MsaG007095 MtrunA17_Chr7g0243891 39.773 88 52 1 311 398 348 434 6.52e-12 68.2
MsaG007095 MtrunA17_Chr4g0074001 47.692 65 33 1 338 402 360 423 2.57e-13 72.4
MsaG007095 MtrunA17_Chr1g0188941 49.180 61 30 1 338 398 52 111 2.58e-13 66.6
MsaG007095 MtrunA17_Chr7g0270191 38.554 83 48 2 325 405 131 212 3.12e-13 70.5
MsaG007095 MtrunA17_Chr1g0150281 46.552 58 31 0 338 395 141 198 3.54e-13 70.5
MsaG007095 MtrunA17_Chr4g0004911 48.438 64 32 1 334 397 333 395 5.38e-13 71.2
MsaG007095 MtrunA17_Chr4g0004911 41.558 77 44 1 321 397 168 243 1.19e-11 67.0
MsaG007095 MtrunA17_Chr3g0129321 43.750 64 35 1 334 397 115 177 5.75e-13 68.2
MsaG007095 MtrunA17_Chr5g0443131 45.161 62 33 1 337 398 157 217 6.38e-13 69.7
MsaG007095 MtrunA17_Chr7g0266621 55.952 84 36 1 1 84 1 83 6.40e-13 69.7
MsaG007095 MtrunA17_Chr2g0333851 45.161 62 34 0 337 398 169 230 7.40e-13 69.7
MsaG007095 MtrunA17_Chr8g0335811 46.875 64 33 1 332 395 149 211 1.23e-12 67.8
MsaG007095 MtrunA17_Chr3g0129361 42.857 70 37 2 328 395 133 201 1.27e-12 67.4
MsaG007095 MtrunA17_Chr1g0150801 45.902 61 32 1 334 394 99 158 1.42e-12 65.9
MsaG007095 MtrunA17_Chr8g0383351 43.750 64 35 1 332 395 155 217 1.48e-12 67.4
MsaG007095 MtrunA17_Chr8g0383251 43.750 64 35 1 334 397 105 167 1.55e-12 66.2
MsaG007095 MtrunA17_Chr5g0418781 36.735 98 60 2 308 405 96 191 1.82e-12 68.2
MsaG007095 MtrunA17_Chr1g0189391 32.500 120 58 4 313 410 59 177 3.57e-12 67.8
MsaG007095 MtrunA17_Chr7g0224801 40.984 61 35 1 334 394 90 149 3.07e-11 62.4
MsaG007095 MtrunA17_Chr6g0485431 44.615 65 34 2 338 401 155 218 6.81e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG007095 AT5G52830.1 52.041 98 45 2 315 412 144 239 2.77e-26 110
MsaG007095 AT4G01250.1 48.454 97 49 1 315 411 106 201 2.84e-26 109
MsaG007095 AT3G04670.1 48.936 94 38 1 313 396 228 321 4.81e-24 103
MsaG007095 AT5G28650.1 47.872 94 39 1 313 396 228 321 9.00e-24 102
MsaG007095 AT4G31550.2 47.917 96 43 2 313 403 218 311 5.10e-23 100
MsaG007095 AT2G24570.1 58.571 70 29 0 334 403 240 309 5.93e-23 100
MsaG007095 AT4G31550.1 57.143 70 30 0 334 403 243 312 1.04e-22 99.8
MsaG007095 AT4G23550.1 47.253 91 47 1 321 411 124 213 2.75e-22 98.2
MsaG007095 AT2G23320.1 52.326 86 34 2 315 395 215 298 4.21e-22 97.8
MsaG007095 AT4G24240.1 49.495 99 43 2 302 395 243 339 6.47e-22 97.8
MsaG007095 AT2G34830.1 44.444 99 45 2 317 406 186 283 7.24e-22 99.0
MsaG007095 AT2G34830.2 44.444 99 45 2 317 406 195 292 8.35e-22 98.6
MsaG007095 AT2G30590.1 48.936 94 38 2 313 396 279 372 1.49e-21 97.1
MsaG007095 AT5G45050.1 46.667 90 47 1 317 406 1160 1248 2.31e-21 99.4
MsaG007095 AT5G45050.4 46.667 90 47 1 317 406 1021 1109 2.55e-21 99.0
MsaG007095 AT5G45050.2 46.667 90 47 1 317 406 1132 1220 2.59e-21 99.4
MsaG007095 AT1G30650.1 37.500 136 70 4 281 406 155 285 4.01e-21 96.7
MsaG007095 AT1G29280.1 58.065 62 26 0 336 397 73 134 3.36e-20 90.9
MsaG007095 AT3G58710.2 53.731 67 31 0 336 402 69 135 7.88e-20 90.1
MsaG007095 AT3G58710.1 53.731 67 31 0 336 402 70 136 7.94e-20 90.1
MsaG007095 AT3G01080.2 54.688 64 28 1 334 397 341 403 9.55e-16 80.5
MsaG007095 AT3G01080.2 41.237 97 46 4 333 424 201 291 6.41e-15 77.8
MsaG007095 AT3G01080.1 54.688 64 28 1 334 397 303 365 1.15e-15 79.7
MsaG007095 AT3G01080.1 41.237 97 46 4 333 424 163 253 7.36e-15 77.4
MsaG007095 AT1G69810.1 45.833 72 38 1 338 408 204 275 1.74e-15 79.0
MsaG007095 AT1G69810.2 45.833 72 38 1 338 408 146 217 1.74e-15 78.2
MsaG007095 AT3G01080.3 41.237 97 46 4 333 424 201 291 1.75e-15 78.2
MsaG007095 AT1G62300.1 50.000 60 30 0 338 397 313 372 2.04e-15 79.7
MsaG007095 AT4G22070.4 50.000 60 30 0 338 397 298 357 2.56e-15 79.3
MsaG007095 AT4G22070.3 50.000 60 30 0 338 397 298 357 2.56e-15 79.3
MsaG007095 AT4G22070.2 50.000 60 30 0 338 397 298 357 2.56e-15 79.3
MsaG007095 AT4G22070.1 50.000 60 30 0 338 397 298 357 2.56e-15 79.3
MsaG007095 AT4G04450.2 43.421 76 43 0 338 413 199 274 3.13e-15 78.6
MsaG007095 AT2G47260.1 41.667 96 49 3 317 406 148 242 3.46e-15 77.4
MsaG007095 AT2G03340.1 53.125 64 29 1 334 397 412 474 4.25e-15 78.6
MsaG007095 AT2G03340.1 48.571 70 34 2 333 402 246 313 3.26e-12 69.3
MsaG007095 AT4G04450.1 43.421 76 43 0 338 413 293 368 5.62e-15 78.2
MsaG007095 AT1G64000.1 39.286 84 48 2 313 394 88 170 1.22e-14 73.2
MsaG007095 AT5G15130.2 39.535 86 50 1 314 397 160 245 1.44e-14 77.0
MsaG007095 AT5G15130.1 39.535 86 50 1 314 397 202 287 1.79e-14 76.6
MsaG007095 AT2G38470.1 51.515 66 31 1 332 397 357 421 2.01e-14 76.3
MsaG007095 AT2G38470.1 48.684 76 37 2 322 397 169 242 2.11e-14 76.3
MsaG007095 AT1G13960.1 51.562 64 30 1 334 397 406 468 2.89e-14 75.9
MsaG007095 AT1G13960.1 50.769 65 30 2 333 397 225 287 4.18e-12 68.9
MsaG007095 AT1G18860.1 50.000 60 30 0 338 397 240 299 3.27e-14 75.9
MsaG007095 AT2G04880.1 51.667 60 28 1 338 397 308 366 4.47e-14 75.1
MsaG007095 AT2G04880.2 51.667 60 28 1 338 397 284 342 5.10e-14 75.1
MsaG007095 AT1G13960.2 51.562 64 30 1 334 397 253 315 5.42e-14 73.9
MsaG007095 AT1G13960.2 48.571 70 34 2 333 402 72 139 1.05e-11 67.0
MsaG007095 AT3G62340.1 47.619 63 30 2 338 399 119 179 6.13e-14 72.8
MsaG007095 AT1G29860.1 44.595 74 38 2 327 398 124 196 6.60e-14 72.8
MsaG007095 AT1G68150.1 50.000 60 30 0 338 397 236 295 6.69e-14 73.9
MsaG007095 AT5G43290.1 57.895 57 23 1 338 394 115 170 6.97e-14 72.8
MsaG007095 AT1G80840.1 43.548 62 35 0 337 398 146 207 8.29e-14 72.8
MsaG007095 AT4G26640.7 52.459 61 28 1 338 398 342 401 9.15e-14 74.3
MsaG007095 AT5G07100.1 45.946 74 39 1 332 405 229 301 9.27e-14 72.8
MsaG007095 AT5G07100.1 44.118 68 37 1 330 397 110 176 1.13e-11 66.6
MsaG007095 AT4G26640.5 52.459 61 28 1 338 398 206 265 9.69e-14 73.6
MsaG007095 AT4G26640.6 52.459 61 28 1 338 398 206 265 9.69e-14 73.6
MsaG007095 AT4G26640.4 52.459 61 28 1 338 398 206 265 9.69e-14 73.6
MsaG007095 AT4G26640.3 52.459 61 28 1 338 398 206 265 9.69e-14 73.6
MsaG007095 AT4G26640.2 52.459 61 28 1 338 398 382 441 1.03e-13 74.3
MsaG007095 AT4G26640.1 52.459 61 28 1 338 398 310 369 1.05e-13 73.9
MsaG007095 AT4G18170.1 45.946 74 37 2 327 398 160 232 1.17e-13 72.8
MsaG007095 AT5G26170.1 50.000 62 30 1 334 395 110 170 1.49e-13 69.3
MsaG007095 AT2G30250.1 50.820 61 29 1 338 398 329 388 1.49e-13 73.2
MsaG007095 AT2G30250.1 50.000 64 30 2 338 401 167 228 8.58e-12 67.8
MsaG007095 AT5G41570.1 46.032 63 33 1 332 394 93 154 1.61e-13 69.7
MsaG007095 AT4G01720.1 48.333 60 31 0 338 397 240 299 1.83e-13 73.2
MsaG007095 AT5G56270.1 49.254 67 33 1 332 398 482 547 1.86e-13 73.9
MsaG007095 AT5G56270.1 50.769 65 30 2 337 401 273 335 1.98e-12 70.5
MsaG007095 AT5G07100.2 49.254 67 33 1 332 398 136 201 1.87e-13 70.1
MsaG007095 AT5G07100.2 42.466 73 41 1 330 402 17 88 2.18e-11 64.3
MsaG007095 AT5G07100.4 49.254 67 33 1 332 398 136 201 1.87e-13 70.1
MsaG007095 AT5G07100.4 42.466 73 41 1 330 402 17 88 2.18e-11 64.3
MsaG007095 AT5G07100.5 49.254 67 33 1 332 398 136 201 1.87e-13 70.1
MsaG007095 AT5G07100.5 42.466 73 41 1 330 402 17 88 2.18e-11 64.3
MsaG007095 AT5G07100.3 49.254 67 33 1 332 398 136 201 1.87e-13 70.1
MsaG007095 AT5G07100.3 42.466 73 41 1 330 402 17 88 2.18e-11 64.3
MsaG007095 AT4G30935.1 47.692 65 33 1 338 402 332 395 2.18e-13 72.8
MsaG007095 AT4G31800.2 44.262 61 34 0 337 397 111 171 2.31e-13 70.5
MsaG007095 AT1G55600.1 38.750 80 48 1 318 397 288 366 2.50e-13 72.8
MsaG007095 AT2G21900.1 49.180 61 30 1 338 398 110 169 2.72e-13 69.3
MsaG007095 AT2G37260.1 55.738 61 25 2 338 398 166 224 3.39e-13 72.0
MsaG007095 AT2G37260.1 40.476 84 44 3 315 394 324 405 9.16e-13 70.9
MsaG007095 AT2G44745.1 47.619 63 32 1 332 394 140 201 4.13e-13 69.3
MsaG007095 AT4G31800.1 44.262 61 34 0 337 397 176 236 4.76e-13 70.9
MsaG007095 AT2G37260.3 55.738 61 25 2 338 398 86 144 4.90e-13 71.2
MsaG007095 AT2G37260.3 40.476 84 44 3 315 394 244 325 1.56e-12 69.7
MsaG007095 AT5G46350.1 48.387 62 31 1 337 398 183 243 4.91e-13 70.9
MsaG007095 AT2G37260.2 55.738 61 25 2 338 398 84 142 5.29e-13 70.9
MsaG007095 AT2G37260.2 40.476 84 44 3 315 394 242 323 1.63e-12 69.3
MsaG007095 AT4G26440.1 47.887 71 35 2 338 408 179 247 5.97e-13 72.0
MsaG007095 AT4G26440.1 38.372 86 52 1 332 417 367 451 5.44e-12 68.9
MsaG007095 AT5G45260.1 46.970 66 33 1 338 401 1209 1274 1.31e-12 71.2
MsaG007095 AT5G49520.1 46.667 60 31 1 338 397 222 280 1.38e-12 70.1
MsaG007095 AT1G69310.4 37.363 91 55 2 315 405 126 214 2.66e-12 68.2
MsaG007095 AT1G69310.2 37.363 91 55 2 315 405 126 214 2.66e-12 68.2
MsaG007095 AT1G69310.1 37.363 91 55 2 315 405 126 214 2.66e-12 68.2
MsaG007095 AT2G25000.2 42.623 61 35 0 337 397 103 163 4.15e-12 66.6
MsaG007095 AT2G25000.4 42.623 61 35 0 337 397 103 163 4.15e-12 66.6
MsaG007095 AT2G25000.3 35.484 93 57 1 337 429 125 214 4.69e-12 66.6
MsaG007095 AT2G40740.1 41.463 82 43 2 316 392 149 230 7.30e-12 67.0
MsaG007095 AT2G40740.3 41.463 82 43 2 316 392 158 239 9.41e-12 66.6
MsaG007095 AT2G25000.1 42.623 61 35 0 337 397 146 206 1.37e-11 65.9
MsaG007095 AT2G46130.1 38.750 80 48 1 315 394 8 86 2.27e-11 61.2
MsaG007095 AT4G39410.1 46.552 58 30 1 338 395 224 280 3.54e-11 65.1
MsaG007095 AT3G01970.1 46.154 65 32 2 338 400 66 129 4.17e-11 61.6
MsaG007095 AT5G13080.1 42.105 57 32 1 338 394 68 123 4.65e-11 61.6

Find 159 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTAAATGCTAGAAATT+TGG 0.075722 2:+13727977 MsaT007095.1:CDS
ACCCAAATTTCTAGCATTTA+AGG 0.127042 2:-13727979 None:intergenic
CTCTCTAATAGTTCTATTTC+TGG 0.157050 2:-13727924 None:intergenic
CATGAACACTAGTGTTTATC+AGG 0.198077 2:-13726657 None:intergenic
CTCCATGCCCACGGGTCTTT+TGG 0.209857 2:-13727270 None:intergenic
ATGAATCCAGTTTCAGAATA+AGG 0.224140 2:-13728080 None:intergenic
CCGTGGGCATGGAGGAAATA+TGG 0.249497 2:+13727279 MsaT007095.1:CDS
CGGATGTGGAGACCCTTTAA+TGG 0.271178 2:-13727310 None:intergenic
TCCTTAAATGCTAGAAATTT+GGG 0.273355 2:+13727978 MsaT007095.1:CDS
GGTGGGGATGGTGGTGGTCA+AGG 0.277140 2:-13726485 None:intergenic
GATAGTGTAGGTGGTGGTGG+CGG 0.292237 2:-13726455 None:intergenic
GATTACAGTGGCAGTGATAA+TGG 0.292582 2:-13726590 None:intergenic
ACCCGTAACATTGCTACTTT+GGG 0.294068 2:-13728036 None:intergenic
GGGGATGGTGGTGGTCAAGG+GGG 0.302266 2:-13726482 None:intergenic
GTGGGGATGGTGGTGGTCAA+GGG 0.302668 2:-13726484 None:intergenic
TATTCTGAAACTGGATTCAT+TGG 0.302973 2:+13728083 MsaT007095.1:CDS
ATAGTTCTATTTCTGGATAA+AGG 0.309444 2:-13727917 None:intergenic
TAGAGGGAATGTGATGTTAT+TGG 0.309533 2:-13726251 None:intergenic
CACCCGTAACATTGCTACTT+TGG 0.310787 2:-13728037 None:intergenic
ATAGTGTAGGTGGTGGTGGC+GGG 0.318835 2:-13726454 None:intergenic
GTGCTTGTAGCATATATGAT+AGG 0.320563 2:-13726631 None:intergenic
AACCTCCCTTATTCTGAAAC+TGG 0.323380 2:+13728074 MsaT007095.1:CDS
TGGGGATGGTGGTGGTCAAG+GGG 0.326902 2:-13726483 None:intergenic
ATGAAGTCATTTGGTTTAAG+TGG 0.330576 2:-13726340 None:intergenic
TGGGATAGTGTAGGTGGTGG+TGG 0.332732 2:-13726458 None:intergenic
TGCAACGCTACCACATTTAC+TGG 0.340291 2:+13726178 MsaT007095.1:CDS
AGTGTAGGTGGTGGTGGCGG+GGG 0.341815 2:-13726452 None:intergenic
GGGTATTGGAAAATTATAAT+TGG 0.342276 2:-13726698 None:intergenic
GGGATGGTGGTGGTCAAGGG+GGG 0.345552 2:-13726481 None:intergenic
TAGTGTAGGTGGTGGTGGCG+GGG 0.346368 2:-13726453 None:intergenic
CAAAGTGGTGTGACACTTAG+AGG 0.354737 2:-13726268 None:intergenic
ATAATTTGTGGGATATTGAT+TGG 0.356463 2:-13726911 None:intergenic
CACTATGCGGATCAAGAAAA+AGG 0.357686 2:+13727067 MsaT007095.1:CDS
TGCTCTTAGCAGATATGATT+GGG 0.361525 2:-13726858 None:intergenic
TTACACTCTGCGGAAGAAAC+TGG 0.365125 2:+13727789 MsaT007095.1:CDS
TCTAGATCTATGAAGTCATT+TGG 0.366608 2:-13726349 None:intergenic
AAATCCAGGTTCCCCTAGTA+TGG 0.366946 2:+13727830 MsaT007095.1:CDS
TGATAGGGGTAGTGGTGGTC+GGG 0.367309 2:-13726615 None:intergenic
ATCTGCAACATCACCATACT+AGG 0.367397 2:-13727843 None:intergenic
ATCAATGCATGCAACATGTT+TGG 0.367904 2:-13726770 None:intergenic
ATCAATGCATGCAACATGTT+TGG 0.367904 2:-13726998 None:intergenic
TCTGACCAAGCTGTTATGTT+TGG 0.377584 2:-13728137 None:intergenic
TTGGTCAGAAGATTATTTAA+TGG 0.378102 2:+13728151 MsaT007095.1:CDS
GGTTGGATGCACGATCAAAA+TGG 0.380288 2:-13726804 None:intergenic
GTTAGTGATGTGGGTGGGGA+TGG 0.386412 2:-13726497 None:intergenic
TCAATGCATGCAACATGTTT+GGG 0.386538 2:-13726769 None:intergenic
TCAATGCATGCAACATGTTT+GGG 0.386538 2:-13726997 None:intergenic
TGTTGTTGTCCAGCGGGTAT+TGG 0.401974 2:-13726712 None:intergenic
ATAATTGGCGGGATATTGAT+TGG 0.402825 2:-13726683 None:intergenic
TTGGTAGTGGTTTCGATTTG+AGG 0.403044 2:-13726232 None:intergenic
ATTACAGTGGCAGTGATAAT+GGG 0.403708 2:-13726589 None:intergenic
TTGATTGATCAGCGAGAACC+TGG 0.406949 2:-13727890 None:intergenic
TTTAATAAGAATGTTGTTGT+TGG 0.409716 2:+13727735 MsaT007095.1:CDS
CAGCGCAAGTCACTGGAGAC+TGG 0.413600 2:+13727765 MsaT007095.1:CDS
GGATGTGGAGACCCTTTAAT+GGG 0.418234 2:-13727309 None:intergenic
GTGCTCTTAGCAGATATGAT+TGG 0.424710 2:-13726859 None:intergenic
AGTGATGTGGGTGGGGATGG+TGG 0.428433 2:-13726494 None:intergenic
ATTGGGAAATTATAATTTGT+GGG 0.434731 2:-13726922 None:intergenic
AGTGGTGGGAATAGTGATGG+TGG 0.436219 2:-13726551 None:intergenic
CCCCAAAGTAGCAATGTTAC+GGG 0.440507 2:+13728035 MsaT007095.1:CDS
ACAACATTCTTATTAAATGT+TGG 0.443200 2:-13727729 None:intergenic
CATTGGGAAATTATAATTTG+TGG 0.445048 2:-13726923 None:intergenic
TATAGCACACCAATGCCATT+TGG 0.445367 2:-13727230 None:intergenic
TGAATCCAGTTTCAGAATAA+GGG 0.447038 2:-13728079 None:intergenic
AGTGGGAGCTGAGGTGGGGA+TGG 0.450737 2:-13726395 None:intergenic
ATACTAGTGGGAGCTGAGGT+GGG 0.454923 2:-13726400 None:intergenic
AGCAGATATGATTGGGGTAG+TGG 0.455016 2:-13726851 None:intergenic
ATGATAGGGGTAGTGGTGGT+CGG 0.457361 2:-13726616 None:intergenic
GAATGTGATGTTATTGGTAG+TGG 0.458828 2:-13726245 None:intergenic
GCCCCAAAGTAGCAATGTTA+CGG 0.458952 2:+13728034 MsaT007095.1:CDS
GATGTGGGTGGGGATGGTGG+TGG 0.464748 2:-13726491 None:intergenic
TAATGTTAGTGATGTGGGTG+GGG 0.465398 2:-13726501 None:intergenic
ACCTGGGCATTGCTGCTCTC+CGG 0.469412 2:-13727873 None:intergenic
TACATCCCAGCGCAAGTCAC+TGG 0.469837 2:+13727758 MsaT007095.1:CDS
ATTGGAAAATTATAATTGGC+GGG 0.476395 2:-13726694 None:intergenic
CCATATTTCCTCCATGCCCA+CGG 0.476436 2:-13727279 None:intergenic
ATGGACTTCAAGTGCCTCAA+TGG 0.476923 2:+13728170 MsaT007095.1:CDS
AGCATATATGATAGGGGTAG+TGG 0.477246 2:-13726623 None:intergenic
CGTGGGCATGGAGGAAATAT+GGG 0.481905 2:+13727280 MsaT007095.1:CDS
TGAAGTCATTTGGTTTAAGT+GGG 0.485609 2:-13726339 None:intergenic
GTTTCGATTTGAGGTGGCGG+TGG 0.486220 2:-13726223 None:intergenic
TGGCATTGGTGTGCTATATG+AGG 0.487449 2:+13727235 MsaT007095.1:CDS
GGGTGGGATAGTGTAGGTGG+TGG 0.487925 2:-13726461 None:intergenic
TGCTTGTAGCATATATGATA+GGG 0.488493 2:-13726630 None:intergenic
TTACCCTCTGTGGAAGAAGT+TGG 0.488537 2:+13727951 MsaT007095.1:CDS
CAGTCTCCAGTGACTTGCGC+TGG 0.491501 2:-13727764 None:intergenic
CATACTAGTGGGAGCTGAGG+TGG 0.495210 2:-13726401 None:intergenic
ATCACCATACTAGGGGAACC+TGG 0.508434 2:-13727834 None:intergenic
GTGGGAGCTGAGGTGGGGAT+GGG 0.514412 2:-13726394 None:intergenic
TAGAAAACATAATAACCAAA+TGG 0.516057 2:+13727215 MsaT007095.1:intron
ACTTATATTGTAACATATGA+AGG 0.520110 2:+13727687 MsaT007095.1:CDS
TATTGGAAAATTATAATTGG+CGG 0.522883 2:-13726695 None:intergenic
GATGTTGCAGATCGATCATC+CGG 0.525110 2:+13727854 MsaT007095.1:CDS
ATATTTGTAAACCTCGGATG+TGG 0.527362 2:-13727324 None:intergenic
TTCCAAAAGACCCGTGGGCA+TGG 0.527766 2:+13727268 MsaT007095.1:CDS
CGCATAGTGCAACCGATGGA+TGG 0.529058 2:-13727053 None:intergenic
AGTCTCCAGTGACTTGCGCT+GGG 0.530524 2:-13727763 None:intergenic
ACATAATAACCAAATGGCAT+TGG 0.531292 2:+13727221 MsaT007095.1:CDS
TCCGGAGAGCAGCAATGCCC+AGG 0.531466 2:+13727872 MsaT007095.1:CDS
TCTACAAACATCACAAATCC+AGG 0.538062 2:+13727816 MsaT007095.1:CDS
TTGAATTTGTTGTTGTCCAG+CGG 0.540268 2:-13726719 None:intergenic
AGCGCAAGTCACTGGAGACT+GGG 0.541737 2:+13727766 MsaT007095.1:CDS
TATAATTTCCCAATGCACGC+TGG 0.543748 2:+13726931 MsaT007095.1:CDS
GATAGGGGTAGTGGTGGTCG+GGG 0.550830 2:-13726614 None:intergenic
GTTGGATGCACGATCAAAAT+GGG 0.551415 2:-13726803 None:intergenic
TGGCATACTAGTGGGAGCTG+AGG 0.554747 2:-13726404 None:intergenic
GGCGATAACTGATGGATGGT+TGG 0.556513 2:-13726821 None:intergenic
CATATTTCCTCCATGCCCAC+GGG 0.559003 2:-13727278 None:intergenic
AGTGTTAATGTTAGTGATGT+GGG 0.567585 2:-13726506 None:intergenic
TACTAGTGGGAGCTGAGGTG+GGG 0.568500 2:-13726399 None:intergenic
TGATACCAAACATAACAGCT+TGG 0.570214 2:+13728132 MsaT007095.1:CDS
GTGGTGGGAATAGTGATGGT+GGG 0.572780 2:-13726550 None:intergenic
GATTGGGGTAGTGGTGGTCG+AGG 0.574650 2:-13726842 None:intergenic
AGATTGTCCAGCAAGAAGAA+AGG 0.576880 2:+13727638 MsaT007095.1:CDS
GGGAGTGGTGGGAATAGTGA+TGG 0.578338 2:-13726554 None:intergenic
TGAATTTGTTGTTGTCCAGC+GGG 0.581001 2:-13726718 None:intergenic
TCTGCAACATCACCATACTA+GGG 0.581668 2:-13727842 None:intergenic
TTGATTGGTTTCATGAACAC+TGG 0.583186 2:-13726896 None:intergenic
GGAATATAGCGCCACCATTG+AGG 0.585327 2:-13728184 None:intergenic
GTGGTTTCGATTTGAGGTGG+CGG 0.594576 2:-13726226 None:intergenic
ATGAACACTGGTGTTTGTCA+TGG 0.597215 2:-13726884 None:intergenic
GTAGTGGTTTCGATTTGAGG+TGG 0.597682 2:-13726229 None:intergenic
AAAGTGGTGTGACACTTAGA+GGG 0.602585 2:-13726267 None:intergenic
GTGGTCGAGGCGATAACTGA+TGG 0.602965 2:-13726829 None:intergenic
ATGAACACTAGTGTTTATCA+GGG 0.614534 2:-13726656 None:intergenic
ATCCAGTTTCAGAATAAGGG+AGG 0.616537 2:-13728076 None:intergenic
GACTTCAAGTGCCTCAATGG+TGG 0.617561 2:+13728173 MsaT007095.1:CDS
TTAATGTTAGTGATGTGGGT+GGG 0.619756 2:-13726502 None:intergenic
GAAGTCATTTGGTTTAAGTG+GGG 0.620194 2:-13726338 None:intergenic
GCTATTACAAATGTAGCACT+TGG 0.623098 2:+13727613 MsaT007095.1:CDS
ATATATGATAGGGGTAGTGG+TGG 0.623620 2:-13726620 None:intergenic
TAGTGTTAATGTTAGTGATG+TGG 0.624324 2:-13726507 None:intergenic
TTACAGTGGCAGTGATAATG+GGG 0.626243 2:-13726588 None:intergenic
GTTGGTAGGACCAGTAAATG+TGG 0.630317 2:-13726188 None:intergenic
CCCGTAACATTGCTACTTTG+GGG 0.630454 2:-13728035 None:intergenic
TTAAAGGGTCTCCACATCCG+AGG 0.642226 2:+13727313 MsaT007095.1:CDS
AGATATGATTGGGGTAGTGG+TGG 0.642708 2:-13726848 None:intergenic
TGATTGATCAGCGAGAACCT+GGG 0.643075 2:-13727889 None:intergenic
ATGAGCTTCCAAAAGACCCG+TGG 0.645013 2:+13727262 MsaT007095.1:CDS
CAAAAGACCCGTGGGCATGG+AGG 0.646342 2:+13727271 MsaT007095.1:CDS
GATCCGCATAGTGCAACCGA+TGG 0.649098 2:-13727057 None:intergenic
GCTTGTAGCATATATGATAG+GGG 0.649167 2:-13726629 None:intergenic
GATCCAACTTCTTCCACAGA+GGG 0.650056 2:-13727954 None:intergenic
GTAAAATCATCATAGCAAAG+TGG 0.655809 2:-13726283 None:intergenic
CATCCATCGGTTGCACTATG+CGG 0.659476 2:+13727054 MsaT007095.1:CDS
TCGAGGCGATAACTGATGGA+TGG 0.664288 2:-13726825 None:intergenic
AGAGAGTCACTTACCCTCTG+TGG 0.665669 2:+13727941 MsaT007095.1:CDS
TGAGCTTCCAAAAGACCCGT+GGG 0.668568 2:+13727263 MsaT007095.1:CDS
GGCATTGGTGTGCTATATGA+GGG 0.674239 2:+13727236 MsaT007095.1:CDS
GTATGCACGTTCAAAATGAG+TGG 0.675266 2:-13727028 None:intergenic
GCTCTTAGCAGATATGATTG+GGG 0.685620 2:-13726857 None:intergenic
ACGTGCATACAACCATCCAT+CGG 0.691580 2:+13727041 MsaT007095.1:CDS
GGTGGTCGGGGTGATTACAG+TGG 0.694133 2:-13726602 None:intergenic
GTTAATGTTAGTGATGTGGG+TGG 0.694254 2:-13726503 None:intergenic
CTGCAACATCACCATACTAG+GGG 0.719168 2:-13727841 None:intergenic
GGATGCACGATCAAAATGGG+TGG 0.719593 2:-13726800 None:intergenic
TACAGTGGCAGTGATAATGG+GGG 0.720290 2:-13726587 None:intergenic
GGAGACTGGGTTACACTCTG+CGG 0.721711 2:+13727779 MsaT007095.1:CDS
TGATCCAACTTCTTCCACAG+AGG 0.749435 2:-13727955 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 13726136 13728211 13726136 ID=MsaG007095
Chr2 mRNA 13726136 13728211 13726136 ID=MsaT007095.1;Parent=MsaG007095
Chr2 exon 13726136 13727088 13726136 ID=MsaT007095.1.exon1;Parent=MsaT007095.1
Chr2 CDS 13726136 13727088 13726136 ID=cds.MsaT007095.1;Parent=MsaT007095.1
Chr2 exon 13727218 13727334 13727218 ID=MsaT007095.1.exon2;Parent=MsaT007095.1
Chr2 CDS 13727218 13727334 13727218 ID=cds.MsaT007095.1;Parent=MsaT007095.1
Chr2 exon 13727611 13728211 13727611 ID=MsaT007095.1.exon3;Parent=MsaT007095.1
Chr2 CDS 13727611 13728211 13727611 ID=cds.MsaT007095.1;Parent=MsaT007095.1
Gene Sequence

>MsaT007095.1

ATGGATAATGATGATCGAGATCTCTTTTCTATTGTTCGTAGTTGCAACGCTACCACATTTACTGGTCCTACCAACATTTTTGAAAATCCACCGCCACCTCAAATCGAAACCACTACCAATAACATCACATTCCCTCTAAGTGTCACACCACTTTGCTATGATGATTTTACTTTTAACCAAGAAAATAGTTCAGTCTCTTTTGCCCCACTTAAACCAAATGACTTCATAGATCTAGATAAATTGATGATCAATTTCAATCCCATCCCCACCTCAGCTCCCACTAGTATGCCAAAAATCAATACCACCACCACATCTTCCCCCGCCACCACCACCTACACTATCCCACCCCCCTTGACCACCACCATCCCCACCCACATCACTAACATTAACACTAGTGTTCATATTATCAACACTCCCACCATCACTATTCCCACCACTCCCCCTACCATTACCCCCATTATCACTGCCACTGTAATCACCCCGACCACCACTACCCCTATCATATATGCTACAAGCACTACCCTGATAAACACTAGTGTTCATGAAACCAATCAATATCCCGCCAATTATAATTTTCCAATACCCGCTGGACAACAACAAATTCAACAAAACATGAACAATCAAGTGTCTGTTCCCAAACATGTTGCATGCATTGATATCACAGCCACCCATTTTGATCGTGCATCCAACCATCCATCAGTTATCGCCTCGACCACCACTACCCCAATCATATCTGCTAAGAGCACTACCATGACAAACACCAGTGTTCATGAAACCAATCAATATCCCACAAATTATAATTTCCCAATGCACGCTGGACAAAAACAGATTCAACAAAACATCAACAATCAAGTGTCTGTTCCCAAACATGTTGCATGCATTGATATCACAACCACTCATTTTGAACGTGCATACAACCATCCATCGGTTGCACTATGCGGATCAAGAAAAAGAAAACATAATAACCAAATGGCATTGGTGTGCTATATGAGGGACGATGAGCTTCCAAAAGACCCGTGGGCATGGAGGAAATATGGGCAAAAACCCATTAAAGGGTCTCCACATCCGAGGAGCTATTACAAATGTAGCACTTGGTCAGATTGTCCAGCAAGAAGAAAGGTTGAAAAATGCAAAACTCAAGAGAACACTTATATTGTAACATATGAAGGAGAGCACAATCATGCAAAGCCAACATTTAATAAGAATGTTGTTGTTGGTACATCCCAGCGCAAGTCACTGGAGACTGGGTTACACTCTGCGGAAGAAACTGGATCATCTACAAACATCACAAATCCAGGTTCCCCTAGTATGGTGATGTTGCAGATCGATCATCCGGAGAGCAGCAATGCCCAGGTTCTCGCTGATCAATCAAAAATCCTTTATCCAGAAATAGAACTATTAGAGAGTCACTTACCCTCTGTGGAAGAAGTTGGATCATCCTTAAATGCTAGAAATTTGGGTTCACATAACAAAATGATTATGCAATTTGATGAGCCCCAAAGTAGCAATGTTACGGGTGTTGTCGATGACTCAAACCTCCCTTATTCTGAAACTGGATTCATTGGAAGCTTTGATGATAATGATGACATTTTGATACCAAACATAACAGCTTGGTCAGAAGATTATTTAATGGACTTCAAGTGCCTCAATGGTGGCGCTATATTCCCTTAG

Protein sequence

>MsaT007095.1

MDNDDRDLFSIVRSCNATTFTGPTNIFENPPPPQIETTTNNITFPLSVTPLCYDDFTFNQENSSVSFAPLKPNDFIDLDKLMINFNPIPTSAPTSMPKINTTTTSSPATTTYTIPPPLTTTIPTHITNINTSVHIINTPTITIPTTPPTITPIITATVITPTTTTPIIYATSTTLINTSVHETNQYPANYNFPIPAGQQQIQQNMNNQVSVPKHVACIDITATHFDRASNHPSVIASTTTTPIISAKSTTMTNTSVHETNQYPTNYNFPMHAGQKQIQQNINNQVSVPKHVACIDITTTHFERAYNHPSVALCGSRKRKHNNQMALVCYMRDDELPKDPWAWRKYGQKPIKGSPHPRSYYKCSTWSDCPARRKVEKCKTQENTYIVTYEGEHNHAKPTFNKNVVVGTSQRKSLETGLHSAEETGSSTNITNPGSPSMVMLQIDHPESSNAQVLADQSKILYPEIELLESHLPSVEEVGSSLNARNLGSHNKMIMQFDEPQSSNVTGVVDDSNLPYSETGFIGSFDDNDDILIPNITAWSEDYLMDFKCLNGGAIFP*