AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG007096


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG007096 MtrunA17_Chr2g0289181 89.700 233 24 0 150 382 1 233 3.00e-157 441
MsaG007096 MtrunA17_Chr7g0266611 53.939 165 75 1 218 382 2 165 9.55e-44 149
MsaG007096 MtrunA17_Chr1g0202461 52.941 102 46 2 140 241 239 338 9.87e-31 120
MsaG007096 MtrunA17_Chr6g0470161 44.800 125 64 1 258 382 1 120 1.26e-29 110
MsaG007096 MtrunA17_Chr7g0248691 40.690 145 82 3 131 273 122 264 1.45e-26 108
MsaG007096 MtrunA17_Chr8g0348311 45.690 116 57 4 129 241 122 234 6.70e-26 106
MsaG007096 MtrunA17_Chr1g0184691 61.905 63 24 0 160 222 290 352 1.76e-22 97.4
MsaG007096 MtrunA17_Chr8g0387501 53.425 73 33 1 164 236 130 201 3.77e-21 92.0
MsaG007096 MtrunA17_Chr3g0139021 45.783 83 44 1 139 220 289 371 4.66e-21 94.0
MsaG007096 MtrunA17_Chr8g0379461 60.000 60 24 0 164 223 77 136 7.24e-21 90.9
MsaG007096 MtrunA17_Chr4g0071521 57.143 63 27 0 160 222 242 304 9.76e-21 91.7
MsaG007096 MtrunA17_Chr2g0293481 52.778 72 33 1 164 235 268 338 1.19e-20 93.2
MsaG007096 MtrunA17_Chr4g0053281 54.545 66 30 0 156 221 259 324 2.35e-20 90.9
MsaG007096 MtrunA17_Chr5g0401821 53.030 66 31 0 156 221 192 257 3.72e-20 89.4
MsaG007096 MtrunA17_Chr2g0284321 60.000 60 24 0 164 223 36 95 4.32e-20 87.8
MsaG007096 MtrunA17_Chr2g0319961 60.000 60 24 0 164 223 81 140 4.43e-20 89.0
MsaG007096 MtrunA17_Chr7g0228941 53.125 64 30 0 157 220 46 109 6.46e-20 84.7
MsaG007096 MtrunA17_Chr1g0147881 59.016 61 25 0 160 220 259 319 1.53e-19 88.6
MsaG007096 MtrunA17_Chr7g0270051 43.956 91 44 1 141 224 24 114 4.80e-19 85.9
MsaG007096 MtrunA17_Chr1g0194481 43.333 90 49 2 143 232 139 226 9.14e-19 86.3
MsaG007096 MtrunA17_Chr2g0302391 49.296 71 36 0 164 234 212 282 3.91e-18 85.5
MsaG007096 MtrunA17_Chr3g0099641 46.970 66 35 0 158 223 246 311 1.62e-17 84.0
MsaG007096 MtrunA17_Chr4g0051881 48.684 76 37 2 149 224 165 238 2.16e-17 82.4
MsaG007096 MtrunA17_Chr7g0263531 49.425 87 42 2 148 234 174 258 9.27e-17 81.6
MsaG007096 MtrunA17_Chr7g0263531 37.168 113 54 3 140 238 324 433 1.08e-15 78.2
MsaG007096 MtrunA17_Chr3g0136961 50.847 59 29 0 163 221 138 196 1.11e-16 79.7
MsaG007096 MtrunA17_Chr7g0218081 54.545 66 29 1 158 223 405 469 1.44e-16 81.3
MsaG007096 MtrunA17_Chr7g0218081 50.704 71 33 2 159 229 224 292 1.84e-15 77.8
MsaG007096 MtrunA17_Chr3g0101131 47.945 73 37 1 156 228 408 479 1.64e-16 81.3
MsaG007096 MtrunA17_Chr3g0101131 47.692 65 32 2 159 223 239 301 3.30e-11 64.7
MsaG007096 MtrunA17_Chr7g0270831 48.485 66 34 0 158 223 211 276 1.79e-16 80.5
MsaG007096 MtrunA17_Chr5g0445311 50.000 68 33 1 156 223 357 423 2.32e-16 80.5
MsaG007096 MtrunA17_Chr5g0445311 48.387 62 30 2 162 223 199 258 6.04e-11 63.9
MsaG007096 MtrunA17_Chr5g0418191 50.704 71 34 1 158 228 315 384 2.89e-16 80.1
MsaG007096 MtrunA17_Chr5g0418191 52.174 69 31 2 159 227 147 213 1.51e-14 74.7
MsaG007096 MtrunA17_Chr1g0150271 39.326 89 49 1 140 223 73 161 3.76e-16 77.8
MsaG007096 MtrunA17_Chr2g0322391 44.156 77 43 0 158 234 344 420 7.32e-16 79.3
MsaG007096 MtrunA17_Chr4g0042831 49.275 69 34 1 160 228 275 342 7.34e-16 78.6
MsaG007096 MtrunA17_Chr4g0042831 38.235 102 51 3 155 247 137 235 7.10e-12 66.2
MsaG007096 MtrunA17_Chr2g0288871 45.455 66 36 0 158 223 300 365 9.40e-16 79.0
MsaG007096 MtrunA17_Chr6g0470151 39.024 123 56 2 81 186 233 353 1.16e-15 77.8
MsaG007096 MtrunA17_Chr3g0079691 49.315 73 35 2 162 234 279 349 1.68e-15 78.2
MsaG007096 MtrunA17_Chr3g0079691 50.000 66 32 1 158 223 490 554 1.45e-14 75.5
MsaG007096 MtrunA17_Chr4g0075201 45.455 66 36 0 158 223 262 327 1.80e-15 77.8
MsaG007096 MtrunA17_Chr2g0294231 45.333 75 39 2 149 223 190 262 1.81e-15 77.0
MsaG007096 MtrunA17_Chr3g0106491 56.061 66 27 2 162 227 197 260 1.82e-15 77.8
MsaG007096 MtrunA17_Chr3g0106491 50.000 64 31 1 160 223 362 424 3.18e-14 73.9
MsaG007096 MtrunA17_Chr4g0001361 46.032 63 34 0 161 223 160 222 2.10e-15 76.3
MsaG007096 MtrunA17_Chr7g0270191 38.889 90 53 2 142 231 125 212 2.48e-15 75.9
MsaG007096 MtrunA17_Chr4g0060271 50.000 60 30 0 164 223 256 315 2.73e-15 77.4
MsaG007096 MtrunA17_Chr5g0432161 51.562 64 30 1 160 223 418 480 2.80e-15 77.4
MsaG007096 MtrunA17_Chr5g0432161 56.452 62 25 2 162 223 243 302 1.65e-14 75.1
MsaG007096 MtrunA17_Chr4g0025061 42.857 77 44 0 158 234 355 431 3.41e-15 77.0
MsaG007096 MtrunA17_Chr4g0074001 47.761 67 34 1 161 227 357 422 4.98e-15 76.6
MsaG007096 MtrunA17_Chr4g0025051 45.070 71 39 0 164 234 336 406 5.01e-15 76.6
MsaG007096 MtrunA17_Chr7g0238921 41.176 102 54 3 136 236 97 193 5.28e-15 75.1
MsaG007096 MtrunA17_Chr4g0051181 37.755 98 60 1 127 223 206 303 5.31e-15 76.3
MsaG007096 MtrunA17_Chr5g0418781 36.697 109 67 2 123 231 85 191 5.61e-15 74.7
MsaG007096 MtrunA17_Chr7g0216891 50.877 57 28 0 164 220 220 276 6.61e-15 76.3
MsaG007096 MtrunA17_Chr5g0447701 43.902 82 44 2 158 239 247 326 6.69e-15 75.5
MsaG007096 MtrunA17_Chr5g0447701 51.471 68 31 2 159 226 88 153 3.89e-14 73.2
MsaG007096 MtrunA17_Chr1g0188941 46.269 67 35 1 158 224 46 111 1.28e-14 69.7
MsaG007096 MtrunA17_Chr7g0249311 46.341 82 42 2 153 234 169 248 1.65e-14 75.1
MsaG007096 MtrunA17_Chr7g0249311 44.000 75 41 1 160 234 389 462 3.63e-14 73.9
MsaG007096 MtrunA17_Chr7g0243891 50.685 73 34 2 155 227 208 278 2.00e-14 74.7
MsaG007096 MtrunA17_Chr7g0243891 40.230 87 51 1 137 223 348 433 7.11e-13 70.1
MsaG007096 MtrunA17_Chr2g0333851 43.750 64 36 0 161 224 167 230 5.07e-14 72.4
MsaG007096 MtrunA17_Chr1g0150281 46.552 58 31 0 164 221 141 198 5.15e-14 72.0
MsaG007096 MtrunA17_Chr5g0443131 42.105 76 42 2 149 224 144 217 6.86e-14 72.0
MsaG007096 MtrunA17_Chr4g0004911 48.485 66 33 1 158 223 331 395 1.03e-13 72.4
MsaG007096 MtrunA17_Chr4g0004911 42.857 77 43 1 147 223 168 243 7.82e-13 69.7
MsaG007096 MtrunA17_Chr7g0249301 42.268 97 49 3 163 259 62 151 1.73e-13 71.2
MsaG007096 MtrunA17_Chr7g0249301 50.820 61 29 1 164 224 293 352 1.86e-13 71.2
MsaG007096 MtrunA17_Chr3g0129321 43.750 64 35 1 160 223 115 177 2.64e-13 68.6
MsaG007096 MtrunA17_Chr1g0150801 45.902 61 32 1 160 220 99 158 4.28e-13 66.6
MsaG007096 MtrunA17_Chr4g0068541 39.130 69 41 1 164 232 209 276 5.12e-13 70.1
MsaG007096 MtrunA17_Chr8g0383251 43.939 66 36 1 158 223 103 167 6.20e-13 67.0
MsaG007096 MtrunA17_Chr3g0129361 40.845 71 39 2 153 221 132 201 9.83e-13 67.0
MsaG007096 MtrunA17_Chr8g0335811 50.000 58 28 1 164 221 155 211 9.83e-13 67.0
MsaG007096 MtrunA17_Chr8g0383351 46.552 58 30 1 164 221 161 217 1.94e-12 66.6
MsaG007096 MtrunA17_Chr1g0189391 31.667 120 59 4 139 236 59 177 4.58e-12 66.6
MsaG007096 MtrunA17_Chr7g0224801 42.623 61 34 1 160 220 90 149 5.29e-12 63.9
MsaG007096 MtrunA17_Chr6g0485431 42.466 73 39 3 156 227 148 218 2.08e-11 64.7
MsaG007096 MtrunA17_Chr7g0266621 46.988 83 35 1 62 144 201 274 3.56e-11 63.5
MsaG007096 MtrunA17_Chr5g0432071 50.000 62 27 3 164 224 105 163 6.02e-11 61.6
MsaG007096 MtrunA17_Chr4g0024391 37.662 77 48 0 158 234 224 300 8.09e-11 63.5
MsaG007096 MtrunA17_Chr8g0387981 36.471 85 48 2 140 218 105 189 8.24e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG007096 AT5G52830.1 52.525 99 45 2 140 238 143 239 9.42e-28 112
MsaG007096 AT4G01250.1 46.392 97 51 1 141 237 106 201 2.27e-25 104
MsaG007096 AT5G28650.1 64.407 59 21 0 164 222 263 321 6.31e-22 95.9
MsaG007096 AT3G04670.1 64.407 59 21 0 164 222 263 321 9.51e-22 95.5
MsaG007096 AT5G45050.4 43.878 98 53 2 136 232 1013 1109 1.11e-21 97.8
MsaG007096 AT5G45050.1 43.878 98 53 2 136 232 1152 1248 1.11e-21 97.8
MsaG007096 AT5G45050.2 43.878 98 53 2 136 232 1124 1220 1.24e-21 97.8
MsaG007096 AT4G23550.1 45.652 92 49 1 147 238 124 214 1.25e-21 94.7
MsaG007096 AT4G31550.2 44.681 94 49 1 139 229 218 311 2.44e-21 94.0
MsaG007096 AT2G24570.1 55.714 70 31 0 160 229 240 309 2.77e-21 94.0
MsaG007096 AT4G31550.1 54.286 70 32 0 160 229 243 312 5.67e-21 93.2
MsaG007096 AT4G24240.1 43.269 104 55 2 122 221 236 339 2.00e-20 92.0
MsaG007096 AT2G23320.1 62.069 58 22 0 164 221 241 298 2.64e-20 90.9
MsaG007096 AT2G30590.1 48.235 85 41 1 141 222 288 372 3.65e-20 91.7
MsaG007096 AT2G34830.2 55.072 69 30 1 164 232 225 292 4.65e-20 91.7
MsaG007096 AT2G34830.1 55.072 69 30 1 164 232 216 283 4.69e-20 91.7
MsaG007096 AT1G29280.1 45.055 91 41 1 142 223 44 134 6.03e-20 89.0
MsaG007096 AT3G58710.2 37.391 115 58 2 164 264 71 185 1.08e-19 88.6
MsaG007096 AT3G58710.1 37.391 115 58 2 164 264 72 186 1.10e-19 88.6
MsaG007096 AT1G30650.1 53.623 69 31 1 164 232 218 285 3.18e-19 89.4
MsaG007096 AT3G01080.2 54.545 66 29 1 158 223 339 403 3.15e-17 83.6
MsaG007096 AT3G01080.2 40.206 97 47 4 159 250 201 291 3.64e-14 73.9
MsaG007096 AT2G47260.1 36.667 120 65 3 142 261 154 262 3.84e-17 82.0
MsaG007096 AT3G01080.1 54.545 66 29 1 158 223 301 365 4.18e-17 82.8
MsaG007096 AT3G01080.1 40.206 97 47 4 159 250 163 253 4.37e-14 73.6
MsaG007096 AT2G03340.1 53.030 66 30 1 158 223 410 474 1.26e-16 81.6
MsaG007096 AT2G03340.1 50.769 65 30 2 159 223 246 308 4.28e-13 70.9
MsaG007096 AT1G69810.2 44.872 78 42 1 158 234 140 217 2.40e-16 79.7
MsaG007096 AT1G69810.1 44.872 78 42 1 158 234 198 275 3.31e-16 79.7
MsaG007096 AT4G04450.2 42.857 77 44 0 158 234 193 269 4.43e-16 79.7
MsaG007096 AT4G22070.4 46.970 66 35 0 158 223 292 357 4.54e-16 80.1
MsaG007096 AT4G22070.3 46.970 66 35 0 158 223 292 357 4.54e-16 80.1
MsaG007096 AT4G22070.2 46.970 66 35 0 158 223 292 357 4.54e-16 80.1
MsaG007096 AT4G22070.1 46.970 66 35 0 158 223 292 357 4.54e-16 80.1
MsaG007096 AT5G26170.1 50.000 64 31 1 158 221 108 170 4.74e-16 75.9
MsaG007096 AT1G62300.1 50.000 60 30 0 164 223 313 372 4.74e-16 80.1
MsaG007096 AT1G13960.1 51.515 66 31 1 158 223 404 468 8.73e-16 79.3
MsaG007096 AT1G13960.1 45.570 79 37 3 145 223 215 287 2.48e-13 71.6
MsaG007096 AT4G04450.1 45.070 71 39 0 164 234 293 363 9.05e-16 79.3
MsaG007096 AT4G18170.1 43.902 82 44 2 143 224 153 232 1.03e-15 77.8
MsaG007096 AT1G13960.2 51.515 66 31 1 158 223 251 315 1.81e-15 77.4
MsaG007096 AT1G13960.2 44.578 83 40 3 145 227 62 138 6.08e-13 69.7
MsaG007096 AT1G29860.1 42.857 84 46 2 149 232 123 204 1.86e-15 76.6
MsaG007096 AT2G38470.1 50.000 76 36 2 148 223 169 242 2.18e-15 78.2
MsaG007096 AT2G38470.1 51.562 64 30 1 160 223 359 421 3.59e-15 77.4
MsaG007096 AT4G26640.7 47.826 69 35 1 156 224 334 401 2.88e-15 77.8
MsaG007096 AT4G26640.7 37.143 105 59 4 161 262 169 269 9.59e-11 63.5
MsaG007096 AT4G26640.5 47.826 69 35 1 156 224 198 265 3.09e-15 77.0
MsaG007096 AT4G26640.5 37.143 105 59 4 161 262 33 133 7.77e-11 63.5
MsaG007096 AT4G26640.6 47.826 69 35 1 156 224 198 265 3.09e-15 77.0
MsaG007096 AT4G26640.6 37.143 105 59 4 161 262 33 133 7.77e-11 63.5
MsaG007096 AT4G26640.4 47.826 69 35 1 156 224 198 265 3.09e-15 77.0
MsaG007096 AT4G26640.4 37.143 105 59 4 161 262 33 133 7.77e-11 63.5
MsaG007096 AT4G26640.3 47.826 69 35 1 156 224 198 265 3.09e-15 77.0
MsaG007096 AT4G26640.3 37.143 105 59 4 161 262 33 133 7.77e-11 63.5
MsaG007096 AT4G26640.2 47.826 69 35 1 156 224 374 441 3.20e-15 77.8
MsaG007096 AT4G26640.2 37.143 105 59 4 161 262 209 309 9.41e-11 63.9
MsaG007096 AT4G26640.1 47.826 69 35 1 156 224 302 369 3.44e-15 77.4
MsaG007096 AT4G26640.1 37.143 105 59 4 161 262 137 237 9.71e-11 63.5
MsaG007096 AT2G04880.1 35.398 113 58 3 122 223 258 366 4.74e-15 77.0
MsaG007096 AT1G18860.1 50.000 60 30 0 164 223 240 299 4.84e-15 77.0
MsaG007096 AT2G04880.2 35.398 113 58 3 122 223 234 342 4.84e-15 76.6
MsaG007096 AT5G43290.1 55.000 60 26 1 161 220 112 170 5.64e-15 75.1
MsaG007096 AT1G68150.1 50.000 60 30 0 164 223 236 295 7.06e-15 75.9
MsaG007096 AT5G46350.1 44.737 76 40 2 149 224 170 243 7.13e-15 75.5
MsaG007096 AT5G15130.2 48.333 60 31 0 164 223 186 245 9.75e-15 75.9
MsaG007096 AT5G07100.1 45.833 72 38 1 160 231 231 301 1.02e-14 74.7
MsaG007096 AT5G07100.1 45.588 68 36 1 156 223 110 176 4.36e-13 69.7
MsaG007096 AT5G15130.1 48.333 60 31 0 164 223 228 287 1.06e-14 75.9
MsaG007096 AT1G69310.4 40.217 92 53 2 140 231 125 214 1.48e-14 73.9
MsaG007096 AT1G69310.2 40.217 92 53 2 140 231 125 214 1.48e-14 73.9
MsaG007096 AT1G69310.1 40.217 92 53 2 140 231 125 214 1.48e-14 73.9
MsaG007096 AT1G80840.1 43.548 62 35 0 163 224 146 207 1.56e-14 73.9
MsaG007096 AT3G01080.3 40.206 97 47 4 159 250 201 291 1.61e-14 74.3
MsaG007096 AT5G07100.2 48.529 68 34 1 164 231 142 208 1.63e-14 72.4
MsaG007096 AT5G07100.2 44.444 72 39 1 156 227 17 87 7.32e-13 67.8
MsaG007096 AT5G07100.4 48.529 68 34 1 164 231 142 208 1.63e-14 72.4
MsaG007096 AT5G07100.4 44.444 72 39 1 156 227 17 87 7.32e-13 67.8
MsaG007096 AT5G07100.5 48.529 68 34 1 164 231 142 208 1.63e-14 72.4
MsaG007096 AT5G07100.5 44.444 72 39 1 156 227 17 87 7.32e-13 67.8
MsaG007096 AT5G07100.3 48.529 68 34 1 164 231 142 208 1.63e-14 72.4
MsaG007096 AT5G07100.3 44.444 72 39 1 156 227 17 87 7.32e-13 67.8
MsaG007096 AT1G64000.1 44.444 63 34 1 158 220 109 170 1.64e-14 72.0
MsaG007096 AT4G31800.2 44.262 61 34 0 163 223 111 171 2.07e-14 72.8
MsaG007096 AT4G01720.1 48.333 60 31 0 164 223 240 299 2.43e-14 74.7
MsaG007096 AT4G30935.1 48.438 64 32 1 164 227 332 394 2.64e-14 74.7
MsaG007096 AT5G56270.1 50.000 64 31 1 160 223 484 546 3.32e-14 74.7
MsaG007096 AT5G56270.1 50.000 66 31 2 162 227 272 335 4.21e-13 71.2
MsaG007096 AT2G30250.1 50.820 61 29 1 164 224 329 388 3.90e-14 73.6
MsaG007096 AT2G30250.1 36.496 137 68 6 149 285 153 270 6.46e-13 70.1
MsaG007096 AT3G62340.1 38.462 91 48 3 164 253 119 202 3.90e-14 72.4
MsaG007096 AT2G37260.1 54.545 66 28 2 159 224 161 224 4.19e-14 73.9
MsaG007096 AT2G37260.1 41.667 84 45 2 140 220 323 405 4.54e-14 73.6
MsaG007096 AT4G31800.1 44.262 61 34 0 163 223 176 236 4.36e-14 72.8
MsaG007096 AT2G37260.3 54.545 66 28 2 159 224 81 144 6.06e-14 72.8
MsaG007096 AT2G37260.3 40.476 84 46 2 140 220 243 325 7.70e-14 72.4
MsaG007096 AT5G49520.1 48.333 60 30 1 164 223 222 280 6.21e-14 73.2
MsaG007096 AT2G37260.2 54.545 66 28 2 159 224 79 142 6.31e-14 72.8
MsaG007096 AT2G37260.2 40.476 84 46 2 140 220 241 323 7.60e-14 72.4
MsaG007096 AT5G41570.1 44.444 63 34 1 158 220 93 154 7.46e-14 69.7
MsaG007096 AT4G26440.1 46.575 73 37 2 162 234 177 247 1.51e-13 72.4
MsaG007096 AT4G26440.1 41.096 73 42 1 160 232 369 440 5.74e-12 67.8
MsaG007096 AT2G21900.1 47.541 61 31 1 164 224 110 169 3.69e-13 68.2
MsaG007096 AT2G44745.1 42.857 70 37 2 153 220 133 201 3.98e-13 68.6
MsaG007096 AT2G25000.2 42.623 61 35 0 163 223 103 163 4.92e-13 68.6
MsaG007096 AT2G25000.4 42.623 61 35 0 163 223 103 163 4.92e-13 68.6
MsaG007096 AT2G25000.3 42.623 61 35 0 163 223 125 185 6.32e-13 68.6
MsaG007096 AT1G55600.1 36.250 80 50 1 144 223 288 366 7.36e-13 70.1
MsaG007096 AT5G45260.1 46.970 66 33 1 164 227 1209 1274 9.72e-13 70.5
MsaG007096 AT2G25000.1 42.623 61 35 0 163 223 146 206 1.53e-12 67.8
MsaG007096 AT3G01970.1 44.928 69 35 2 160 226 62 129 3.33e-12 64.3
MsaG007096 AT4G39410.1 40.845 71 39 2 153 221 211 280 4.49e-12 66.6
MsaG007096 AT5G13080.1 43.860 57 31 1 164 220 68 123 7.21e-12 63.2
MsaG007096 AT2G40740.1 38.710 93 49 3 140 224 147 239 1.14e-11 65.5
MsaG007096 AT2G40740.3 38.710 93 49 3 140 224 156 248 1.30e-11 65.5
MsaG007096 AT2G46130.1 45.614 57 30 1 164 220 31 86 5.09e-11 59.7
MsaG007096 AT1G66560.1 39.560 91 51 2 132 218 70 160 6.34e-11 62.8
MsaG007096 AT4G12020.3 45.714 70 36 2 159 228 464 531 6.54e-11 64.7
MsaG007096 AT4G12020.10 45.714 70 36 2 159 228 464 531 6.71e-11 64.7
MsaG007096 AT4G12020.6 45.714 70 36 2 159 228 464 531 6.72e-11 64.7
MsaG007096 AT4G12020.8 45.714 70 36 2 159 228 464 531 6.72e-11 64.7
MsaG007096 AT4G12020.4 45.714 70 36 2 159 228 464 531 7.67e-11 64.7
MsaG007096 AT4G12020.2 45.714 70 36 2 159 228 464 531 7.67e-11 64.7
MsaG007096 AT4G12020.7 45.714 70 36 2 159 228 464 531 7.68e-11 64.7
MsaG007096 AT4G12020.1 45.714 70 36 2 159 228 464 531 7.96e-11 64.7
MsaG007096 AT4G12020.9 45.714 70 36 2 159 228 464 531 7.96e-11 64.7
MsaG007096 AT4G12020.5 45.714 70 36 2 159 228 397 464 8.41e-11 64.3

Find 85 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACAAACATCACAAATTT+AGG 0.187343 2:+13735988 MsaT007096.1:CDS
CTCTCTAATAGTTCCATTTC+CGG 0.214380 2:-13736096 None:intergenic
AAATTTAGGTTCGCCTAATA+TGG 0.245558 2:+13736002 MsaT007096.1:CDS
ATGAGTCCAGTTTCAGAATA+AGG 0.269380 2:-13736252 None:intergenic
ATCTGTAACATCACCATATT+AGG 0.294748 2:-13736015 None:intergenic
TCGTGGGCGTGGAGGAAATA+TGG 0.318270 2:+13735451 MsaT007096.1:CDS
GAGTATTGGAAAATTATATT+TGG 0.320543 2:-13735100 None:intergenic
ATAGTTCCATTTCCGGATAA+AGG 0.337415 2:-13736089 None:intergenic
ATCAATGCATGCAACAGGTT+TGG 0.338091 2:-13734944 None:intergenic
ATCAATGCATGCAACAGGTT+TGG 0.338091 2:-13735172 None:intergenic
CACTATGCAGATCGAGAAAA+AGG 0.340622 2:+13735241 MsaT007096.1:CDS
AAGTATTCGAAAATTATAAT+TGG 0.344998 2:-13734872 None:intergenic
CAGTCTCTGGTGACTTGCGC+TGG 0.347837 2:-13735936 None:intergenic
TGATTGGGGTAGTGGTGGTC+GGG 0.349837 2:-13735017 None:intergenic
AACCTCCCTTATTCTGAAAC+TGG 0.353308 2:+13736246 MsaT007096.1:CDS
TCAATGCATGCAACAGGTTT+GGG 0.360204 2:-13734943 None:intergenic
TCAATGCATGCAACAGGTTT+GGG 0.360204 2:-13735171 None:intergenic
ATAATTGGTGGGATATTGAT+TGG 0.368833 2:-13734857 None:intergenic
TATTCTGAAACTGGACTCAT+TGG 0.369961 2:+13736255 MsaT007096.1:CDS
ATATTTGGTGAGATATTGAT+TGG 0.376688 2:-13735085 None:intergenic
TCTGACCAAGCTGTTATGTT+TGG 0.377584 2:-13736309 None:intergenic
TTGGTCAGAAGATTATTTAA+TGG 0.378102 2:+13736323 MsaT007096.1:CDS
TGCTCGTAGCAGATATGATT+GGG 0.388493 2:-13735032 None:intergenic
CCACAAAGTAGGAATGTTAC+AGG 0.397474 2:+13736207 MsaT007096.1:CDS
TTGATTGATCAGCGAGAACC+TGG 0.406949 2:-13736062 None:intergenic
TTTAATAAGAATGTTGTTGT+TGG 0.409716 2:+13735907 MsaT007096.1:CDS
CCTGTAACATTCCTACTTTG+TGG 0.419186 2:-13736207 None:intergenic
ACCCAAGTTTCTAAAATTTG+AGG 0.428675 2:-13736151 None:intergenic
GTGATATCAATGCATGCAAC+AGG 0.433021 2:-13735177 None:intergenic
GGAATGTTACAGGTGTTGTC+GGG 0.434516 2:+13736217 MsaT007096.1:CDS
ATGATTGGGGTAGTGGTGGT+CGG 0.440238 2:-13735018 None:intergenic
ACAACATTCTTATTAAATGT+TGG 0.443200 2:-13735901 None:intergenic
GTGCTCGTAGCAGATATGAT+TGG 0.445306 2:-13735033 None:intergenic
TGAGTCCAGTTTCAGAATAA+GGG 0.453523 2:-13736251 None:intergenic
TATAACACATCAATGCCATT+TGG 0.456145 2:-13735402 None:intergenic
CAGCGCAAGTCACCAGAGAC+TGG 0.456474 2:+13735937 MsaT007096.1:CDS
GTGATATCAATGCATGCAAC+AGG 0.463584 2:-13734949 None:intergenic
GATCCAACTTCTTCGACAAC+AGG 0.468621 2:-13736126 None:intergenic
TGTTGTTGCCCAGCGAGTAT+TGG 0.469068 2:-13735114 None:intergenic
ACCTGGGCATTGCTGCTCTC+CGG 0.469412 2:-13736045 None:intergenic
AGCAGATATGATTGGGGTAG+TGG 0.472211 2:-13735025 None:intergenic
TTACCTGTTGTCGAAGAAGT+TGG 0.474676 2:+13736123 MsaT007096.1:CDS
TATTCGAAAATTATAATTGG+TGG 0.490355 2:-13734869 None:intergenic
GATGTTACAGATTGATCATC+CGG 0.490780 2:+13736026 MsaT007096.1:CDS
TTACACTCTGCAGAAGAAGC+TGG 0.498625 2:+13735961 MsaT007096.1:CDS
ATGGACTTCAACCGCCTCAA+TGG 0.499646 2:+13736342 MsaT007096.1:CDS
ACTTATATTGTGACATATGA+AGG 0.505269 2:+13735859 MsaT007096.1:CDS
AGGAATGTTACAGGTGTTGT+CGG 0.507063 2:+13736216 MsaT007096.1:CDS
TGGCATTGATGTGTTATATG+AGG 0.512049 2:+13735407 MsaT007096.1:CDS
GCAGAGTGTAATCCAGTCTC+TGG 0.513748 2:-13735949 None:intergenic
ATTCGAAAATTATAATTGGT+GGG 0.515904 2:-13734868 None:intergenic
TAGAAAACATAATAACCAAA+TGG 0.516057 2:+13735387 MsaT007096.1:intron
AGTCTCTGGTGACTTGCGCT+GGG 0.516218 2:-13735935 None:intergenic
GATTGGGGTAGTGGTGGTCG+GGG 0.520285 2:-13735016 None:intergenic
TCCGGAGAGCAGCAATGCCC+AGG 0.531466 2:+13736044 MsaT007096.1:CDS
TTTCAAAAGACTCGTGGGCG+TGG 0.554710 2:+13735440 MsaT007096.1:CDS
TGATACCAAACATAACAGCT+TGG 0.570214 2:+13736304 MsaT007096.1:CDS
TTAAAGGGTCTCCACATCCA+AGG 0.571232 2:+13735485 MsaT007096.1:CDS
TGATTGTCCAGCAAGAAGAA+AGG 0.574441 2:+13735810 MsaT007096.1:CDS
TCGGGGTGATAGCTGATGGA+TGG 0.591717 2:-13734999 None:intergenic
GACTTCAACCGCCTCAATGG+TGG 0.595091 2:+13736345 MsaT007096.1:CDS
GGAATATAGCACCACCATTG+AGG 0.603269 2:-13736356 None:intergenic
AATTTGATGAACCACAAAGT+AGG 0.604187 2:+13736196 MsaT007096.1:CDS
ATGAACACTAGTCTTTGTCA+TGG 0.605141 2:-13735058 None:intergenic
GGCATTGATGTGTTATATGA+GGG 0.611463 2:+13735408 MsaT007096.1:CDS
GTGGTCGGGGTGATAGCTGA+TGG 0.611835 2:-13735003 None:intergenic
ATGAACACTAGTGTTTGTCA+TGG 0.612356 2:-13734830 None:intergenic
GTCCAGTTTCAGAATAAGGG+AGG 0.616537 2:-13736248 None:intergenic
ATATGTGTAAACCTTGGATG+TGG 0.620653 2:-13735496 None:intergenic
GCTATTACAAATGTAGCACT+TGG 0.620926 2:+13735785 MsaT007096.1:CDS
TGCATAGTGCAACTGATGGA+TGG 0.623878 2:-13735227 None:intergenic
CAAAAGACTCGTGGGCGTGG+AGG 0.623998 2:+13735443 MsaT007096.1:CDS
CTCTGGTGACTTGCGCTGGG+AGG 0.626715 2:-13735932 None:intergenic
TGAGCTTTCAAAAGACTCGT+GGG 0.628685 2:+13735435 MsaT007096.1:CDS
ATTGATGTGTTATATGAGGG+AGG 0.631085 2:+13735411 MsaT007096.1:CDS
GATCTGCATAGTGCAACTGA+TGG 0.634706 2:-13735231 None:intergenic
GAATGTTACAGGTGTTGTCG+GGG 0.638149 2:+13736218 MsaT007096.1:CDS
ATGAGCTTTCAAAAGACTCG+TGG 0.638619 2:+13735434 MsaT007096.1:CDS
AGATATGATTGGGGTAGTGG+TGG 0.642708 2:-13735022 None:intergenic
TGATTGATCAGCGAGAACCT+GGG 0.643075 2:-13736061 None:intergenic
GTATGCACGTTCAAAATGAG+CGG 0.654003 2:-13735202 None:intergenic
GTATGCACATTCAAAATGAG+TGG 0.673260 2:-13734974 None:intergenic
TATGCACATTCAAAATGAGT+GGG 0.679056 2:-13734973 None:intergenic
ATATAGCACCACCATTGAGG+CGG 0.679111 2:-13736353 None:intergenic
GCTCGTAGCAGATATGATTG+GGG 0.709067 2:-13735031 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 13734832 13736383 13734832 ID=MsaG007096
Chr2 mRNA 13734832 13736383 13734832 ID=MsaT007096.1;Parent=MsaG007096
Chr2 exon 13734832 13735262 13734832 ID=MsaT007096.1.exon1;Parent=MsaT007096.1
Chr2 CDS 13734832 13735262 13734832 ID=cds.MsaT007096.1;Parent=MsaT007096.1
Chr2 exon 13735390 13735506 13735390 ID=MsaT007096.1.exon2;Parent=MsaT007096.1
Chr2 CDS 13735390 13735506 13735390 ID=cds.MsaT007096.1;Parent=MsaT007096.1
Chr2 exon 13735783 13736383 13735783 ID=MsaT007096.1.exon3;Parent=MsaT007096.1
Chr2 CDS 13735783 13736383 13735783 ID=cds.MsaT007096.1;Parent=MsaT007096.1
Gene Sequence

>MsaT007096.1

ATGACAAACACTAGTGTTCATGAAACCAATCAATATCCCACCAATTATAATTTTCGAATACTTGCTGGACAACAACAGATTCAACAAAACATCAACAATCAAGTGTCTGTTCCCAAACCTGTTGCATGCATTGATATCACACCCACTCATTTTGAATGTGCATACAACCATCCATCAGCTATCACCCCGACCACCACTACCCCAATCATATCTGCTACGAGCACTGCCATGACAAAGACTAGTGTTCATGAAACCAATCAATATCTCACCAAATATAATTTTCCAATACTCGCTGGGCAACAACAGATTCAACAAAACATCAACAATCAAGCGTCTGTTCCCAAACCTGTTGCATGCATTGATATCACAACCGCTCATTTTGAACGTGCATACAACCATCCATCAGTTGCACTATGCAGATCGAGAAAAAGAAAACATAATAACCAAATGGCATTGATGTGTTATATGAGGGAGGATGAGCTTTCAAAAGACTCGTGGGCGTGGAGGAAATATGGACAAAAAGCTATTAAAGGGTCTCCACATCCAAGGAGCTATTACAAATGTAGCACTTGGTCTGATTGTCCAGCAAGAAGAAAGGTTGAAAAATGCAAAACTCAAGAGAACACTTATATTGTGACATATGAAGGAGAGCACAATCATGCAAAGCCAACATTTAATAAGAATGTTGTTGTTGGTACCTCCCAGCGCAAGTCACCAGAGACTGGATTACACTCTGCAGAAGAAGCTGGATCATCTACAAACATCACAAATTTAGGTTCGCCTAATATGGTGATGTTACAGATTGATCATCCGGAGAGCAGCAATGCCCAGGTTCTCGCTGATCAATCAAAAATCCTTTATCCGGAAATGGAACTATTAGAGAGTCAATTACCTGTTGTCGAAGAAGTTGGATCATCCTCAAATTTTAGAAACTTGGGTTCACATAACAAAATGATTATGCAATTTGATGAACCACAAAGTAGGAATGTTACAGGTGTTGTCGGGGACTCAAACCTCCCTTATTCTGAAACTGGACTCATTGGAAGCTTTGATGATAATGATGACATTTTGATACCAAACATAACAGCTTGGTCAGAAGATTATTTAATGGACTTCAACCGCCTCAATGGTGGTGCTATATTCCCTTAG

Protein sequence

>MsaT007096.1

MTNTSVHETNQYPTNYNFRILAGQQQIQQNINNQVSVPKPVACIDITPTHFECAYNHPSAITPTTTTPIISATSTAMTKTSVHETNQYLTKYNFPILAGQQQIQQNINNQASVPKPVACIDITTAHFERAYNHPSVALCRSRKRKHNNQMALMCYMREDELSKDSWAWRKYGQKAIKGSPHPRSYYKCSTWSDCPARRKVEKCKTQENTYIVTYEGEHNHAKPTFNKNVVVGTSQRKSPETGLHSAEEAGSSTNITNLGSPNMVMLQIDHPESSNAQVLADQSKILYPEMELLESQLPVVEEVGSSSNFRNLGSHNKMIMQFDEPQSRNVTGVVGDSNLPYSETGLIGSFDDNDDILIPNITAWSEDYLMDFNRLNGGAIFP*