AlfalfaGEDB | MsaG007101

M. sativa ssp. caerulea / MsaG007101

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007101	XP_013462902.1	88.932	515	54	2	1	512	1	515	0.0	945

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007101	sp\|Q84WU6\|ARFQ_ARATH	37.017	543	268	15	9	489	1	531	4.51e-99	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007101	tr\|A0A072V559\|A0A072V559_MEDTR	88.932	515	54	2	1	512	1	515	0.0	945

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TFs/TRs:

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Gene ID	Type	Classification
MsaG007101	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007101	MtrunA17_Chr2g0289221	91.900	321	25	1	1	320	1	321	0.0	618
MsaG007101	MtrunA17_Chr5g0417281	59.339	514	191	8	13	511	4	514	0.0	563
MsaG007101	MtrunA17_Chr5g0436761	54.167	504	179	7	9	506	1	458	5.27e-178	508
MsaG007101	MtrunA17_Chr5g0417211	53.150	508	130	9	9	511	1	405	1.39e-165	474
MsaG007101	MtrunA17_Chr5g0424931	50.369	542	211	12	7	511	6	526	1.59e-165	479
MsaG007101	MtrunA17_Chr1g0178011	45.294	510	197	14	9	504	1	442	7.66e-131	388
MsaG007101	MtrunA17_Chr2g0277461	45.365	507	206	11	13	510	6	450	1.04e-127	380
MsaG007101	MtrunA17_Chr3g0115271	43.393	560	248	13	10	511	9	557	8.98e-126	379
MsaG007101	MtrunA17_Chr5g0425261	49.462	372	153	14	9	361	1	356	1.22e-99	305
MsaG007101	MtrunA17_Chr5g0424741	40.713	533	223	18	9	464	1	517	3.39e-99	309

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007101	AT1G77850.1	37.017	543	268	15	9	489	1	531	4.59e-100	313
MsaG007101	AT1G77850.2	37.017	543	268	15	9	489	1	531	5.53e-100	313
MsaG007101	AT4G30080.1	40.141	426	174	14	17	379	16	423	9.25e-83	270
MsaG007101	AT2G28350.2	38.702	416	178	12	13	363	3	406	9.92e-80	262
MsaG007101	AT2G28350.1	38.702	416	178	12	13	363	3	406	1.81e-79	262
MsaG007101	AT2G46530.1	36.240	367	191	16	20	358	21	372	7.10e-55	194
MsaG007101	AT2G46530.3	36.240	367	191	16	20	358	42	393	2.13e-54	193
MsaG007101	AT3G61830.1	36.176	340	187	13	20	339	25	354	1.02e-53	191
MsaG007101	AT1G35520.1	36.170	376	207	14	3	358	10	372	1.87e-52	187
MsaG007101	AT5G37020.2	34.091	352	195	10	20	345	22	362	1.04e-51	188

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Find 137 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTTACTATTTCCCGCA+AGG	0.585623	2:+13785456	MsaT007101.1:CDS
AAATTAGTTCAACCTCCCAA+GGG	0.635245	2:-13787331	None:intergenic
AACATTAGCACATCTATATT+TGG	0.209645	2:+13787653	MsaT007101.1:CDS
AACCATCAGTGATGGGAGTT+AGG	0.442469	2:-13785623	None:intergenic
AACTAAAGAATCGGTTATGG+CGG	0.592037	2:+13786040	MsaT007101.1:CDS
AAGATTTGGCGGTGCTGCGC+CGG	0.479939	2:+13785402	MsaT007101.1:CDS
AAGGACCGTGACCATCAAGA+AGG	0.601243	2:-13785527	None:intergenic
AAGGGAGAAGATGGTTGTAT+GGG	0.567406	2:+13787833	MsaT007101.1:CDS
AAGGGATAGGGTTTCAGTGT+TGG	0.458344	2:-13785508	None:intergenic
AATATAGATGTGCTAATGTT+TGG	0.410256	2:-13787650	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	13785345	13787868	13785345	ID=MsaG007101
Chr2	mRNA	13785345	13787868	13785345	ID=MsaT007101.1;Parent=MsaG007101
Chr2	exon	13785345	13786301	13785345	ID=MsaT007101.1.exon1;Parent=MsaT007101.1
Chr2	CDS	13785345	13786301	13785345	ID=cds.MsaT007101.1;Parent=MsaT007101.1
Chr2	exon	13787287	13787868	13787287	ID=MsaT007101.1.exon2;Parent=MsaT007101.1
Chr2	CDS	13787287	13787868	13787287	ID=cds.MsaT007101.1;Parent=MsaT007101.1

Gene Sequence

>MsaT007101.1

ATGGTAGAACCAAATATTTCCGCCATGTCTCCACCACAACCCAGCCGTGTAGAACCAAAGATTTGGCGGTGCTGCGCCGGACACTCTGTCAAAATTCCTAAACTTCATTCAAAAGTTTACTATTTCCCGCAAGGTCACTTAGAACATGCTTGCCCTAATCCCCCCAACACTGAAACCCTATCCCTTCTTGATGGTCACGGTCCTTTCAATCCTTGCATTGTATCGGCCGTTGATTACCTCGCCGATCCTCATACTGATGAAGTCTTTGTCAAACTTCTCCTAACTCCCATCACTGATGGTTGTGTTCACGAACCTCCTACTGAGGTTCGTGAAGAGGAACCTACAGGTGATGAAATTGTTTCCTCTGGAAAAACTCTAACCCTATCTGATGCTAATAATGGTGGTGCATTCTCCGTACCTCGTTCTTGCGCGACATCAATCTTCCCACCGCTTGACCTCGAAACTAAACAGCCATCTCAAGAACTGTCTGTTACCGACGTTCATGGCAAAGTCTGGGAGTTTCGCCATGTCTACCGTGGAACTCCCTTGAGACACCTGATCACCACTAATTGGAGTAAGTTCGTGGACGAAAAGAAACTCGTCTGCGGCGATTCTGTAATTTTTATGAAAAAGAAATCATCTGGAGATATGTTTGTTGGAATCCGTCGGCATACTAAGTTTGGTGCTGCTAAGATAACTAAAGAATCGGTTATGGCGGCAGCGGAGTTGGCGGATAAGAATATCGCTTTTGAAGTTGAGTATTATCCTACGATTGAAGGGTTTTGTGATTTTGTGGTGGATGCCAAGGTTGTTGAGGATGCAATGAAGATTAACTGGAATTGTGGAATGAGAATTAAATTTTCTTTGAAGAATGATGATTATTCAAAGAGATGGTCAGTTTTTAAGGGTACAATATCTGCTCTCTCTGCTCCTAATCGTCCATGGCGCATGCTTGAGGTTAACTGGGATGGACCTGAAGTCTCACATAATCCAAAGCAAAGCCCTTGGGAGGTTGAACTAATTTCTTATATACCTGCACTGAATCTACAATTGCCCTCAGCAAAAAGGCTTAGAGTTGCTCAGGTTTATACCTCATTAGATAATATAGAGAGATCTTCCATTCCAATGATAGATTTCCAGCATTCAACAGCAAAATCCTTGAATCAAACATTGTTGGATTGTGATACTTTTATTGAGGGCATGCAGAGAGCCCAAGACAGTCTTTTTTCCACAGGAACTACTTCCAACTCTTTCAATGATAGGGCCAATGATTTCATTGAGAAAAATTCAATGGGAAGGTTGGATATTGTGTCAACTGAGCCAAACATTAGCACATCTATATTTGGTGACTTGTCACCTCTTAACCATAGCATTTTGAACCCCTTTGAGACAAAGTTTGACGGTCCCCACAAGTGCAGCACCAAAGAAGTTAATCCTGGTTCATTTATGCTATTTGGTAAGATGATACATCCTGTTGGAAGTAATTTGCATGATTCTGCTACCAAGGGAGAAGATGGTTGTATGGGCTGCAATAATTGA

Protein sequence

>MsaT007101.1

MVEPNISAMSPPQPSRVEPKIWRCCAGHSVKIPKLHSKVYYFPQGHLEHACPNPPNTETLSLLDGHGPFNPCIVSAVDYLADPHTDEVFVKLLLTPITDGCVHEPPTEVREEEPTGDEIVSSGKTLTLSDANNGGAFSVPRSCATSIFPPLDLETKQPSQELSVTDVHGKVWEFRHVYRGTPLRHLITTNWSKFVDEKKLVCGDSVIFMKKKSSGDMFVGIRRHTKFGAAKITKESVMAAAELADKNIAFEVEYYPTIEGFCDFVVDAKVVEDAMKINWNCGMRIKFSLKNDDYSKRWSVFKGTISALSAPNRPWRMLEVNWDGPEVSHNPKQSPWEVELISYIPALNLQLPSAKRLRVAQVYTSLDNIERSSIPMIDFQHSTAKSLNQTLLDCDTFIEGMQRAQDSLFSTGTTSNSFNDRANDFIEKNSMGRLDIVSTEPNISTSIFGDLSPLNHSILNPFETKFDGPHKCSTKEVNPGSFMLFGKMIHPVGSNLHDSATKGEDGCMGCNN*