AlfalfaGEDB | MsaG007183

M. sativa ssp. caerulea / MsaG007183

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03514.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007183	XP_003594263.1	88.353	601	51	5	1	585	1	598	0.0	1077

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007183	sp\|Q9M0M5\|SCL13_ARATH	46.167	600	231	11	1	583	1	525	1.11e-169	495

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007183	tr\|G7IPA4\|G7IPA4_MEDTR	88.353	601	51	5	1	585	1	598	0.0	1077

TFs/TRs:

Gene ID	Type	Classification
MsaG007183	TF	GRAS

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000273	MsaG007183	0.849351	6.493082e-60	3.442229e-57
MsaG005050	MsaG007183	0.830362	5.515159e-55	1.612690e-52
MsaG005477	MsaG007183	0.815272	1.742084e-51	3.390894e-49
MsaG005680	MsaG007183	0.825897	6.486996e-54	1.672850e-51
MsaG006203	MsaG007183	0.823794	2.021502e-53	4.920879e-51
MsaG006269	MsaG007183	0.805124	2.624984e-49	3.991115e-47
MsaG007183	MsaG007411	0.808319	5.590682e-50	9.167914e-48
MsaG007183	MsaG008433	0.836721	1.451066e-56	5.118126e-54
MsaG007183	MsaG009081	0.825542	7.868271e-54	2.009027e-51
MsaG007183	MsaG009095	0.817211	6.450162e-52	1.319265e-49
MsaG007183	MsaG010102	0.822119	4.945004e-53	1.150444e-50
MsaG007183	MsaG011287	0.806546	1.323639e-49	2.080868e-47
MsaG007183	MsaG011558	0.849536	5.768545e-60	3.077723e-57
MsaG007183	MsaG017776	0.811159	1.379672e-50	2.423684e-48
MsaG007183	MsaG018218	0.826657	4.285189e-54	1.128594e-51
MsaG007183	MsaG018834	0.871711	1.135616e-66	1.415202e-63
MsaG007183	MsaG019930	0.829862	7.292265e-55	2.102168e-52
MsaG007183	MsaG021043	0.824768	1.196665e-53	2.991049e-51
MsaG007183	MsaG025467	0.818690	2.999679e-52	6.373786e-50
MsaG007183	MsaG026860	0.807656	7.724675e-50	1.246704e-47
MsaG007183	MsaG028046	0.826449	4.801626e-54	1.257391e-51
MsaG007183	MsaG029086	0.810621	1.801561e-50	3.123486e-48
MsaG007183	MsaG029324	0.812549	6.895962e-51	1.253636e-48
MsaG007183	MsaG029540	0.809304	3.450297e-50	5.793610e-48
MsaG007183	MsaG032285	0.866791	4.425992e-65	4.494555e-62
MsaG007183	MsaG036109	0.827210	3.164988e-54	8.465217e-52
MsaG007183	MsaG041096	0.820474	1.180020e-52	2.628044e-50
MsaG007183	MsaG045291	0.800126	2.786969e-48	3.778807e-46
MsaG007183	MsaG045452	0.811573	1.122916e-50	1.992755e-48
MsaG007183	MsaG045838	0.802744	8.154737e-49	1.173393e-46
MsaG007183	MsaG045863	0.822623	3.783046e-53	8.921223e-51
MsaG007183	MsaG046539	0.804223	4.038439e-49	6.013340e-47
MsaG007183	MsaG010137	0.802067	1.122614e-48	1.590530e-46
MsaG007183	MsaG022111	0.807289	9.231956e-50	1.476963e-47
MsaG007183	MsaG028858	0.806696	1.230550e-49	1.941414e-47
MsaG007183	MsaG031338	0.826947	3.656269e-54	9.707761e-52
MsaG007183	MsaG033321	0.838642	4.687652e-57	1.753877e-54
MsaG007183	MsaG033360	0.818742	2.920100e-52	6.213028e-50
MsaG007183	MsaG037678	0.811515	1.155530e-50	2.047710e-48
MsaG007183	MsaG036053	0.803258	6.393747e-49	9.309695e-47
MsaG007183	MsaG037454	0.831251	3.346933e-55	1.003956e-52
MsaG007183	MsaG036985	0.817173	6.578818e-52	1.344241e-49
MsaG007183	MsaG043094	0.832375	1.772441e-55	5.493936e-53

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007183	MtrunA17_Chr2g0290241	91.101	427	27	1	170	585	1	427	0.0	815
MsaG007183	MtrunA17_Chr4g0076091	53.311	604	202	9	1	584	1	544	0.0	587
MsaG007183	MtrunA17_Chr5g0447691	46.446	605	241	14	1	583	1	544	2.29e-173	502
MsaG007183	MtrunA17_Chr3g0101141	52.941	425	185	4	173	583	119	542	5.91e-160	468
MsaG007183	MtrunA17_Chr5g0445331	55.155	388	158	4	211	583	146	532	8.84e-150	442
MsaG007183	MtrunA17_Chr2g0319091	52.356	382	164	3	215	582	201	578	4.32e-138	413
MsaG007183	MtrunA17_Chr1g0159461	45.553	371	190	2	224	583	223	592	6.98e-119	364
MsaG007183	MtrunA17_Chr3g0125811	45.283	371	191	2	224	583	201	570	8.32e-115	353
MsaG007183	MtrunA17_Chr7g0224271	34.884	387	222	5	221	584	295	674	3.13e-69	236
MsaG007183	MtrunA17_Chr4g0031721	31.746	378	237	4	221	582	311	683	1.41e-59	210
MsaG007183	MtrunA17_Chr4g0031711	30.159	378	247	5	221	582	356	732	1.17e-58	208
MsaG007183	MtrunA17_Chr6g0468561	33.419	389	211	9	224	583	293	662	8.28e-58	205
MsaG007183	MtrunA17_Chr2g0306641	29.522	481	304	13	124	584	23	488	7.86e-57	199
MsaG007183	MtrunA17_Chr7g0236851	33.333	372	228	5	224	582	292	656	2.33e-56	201
MsaG007183	MtrunA17_Chr2g0328381	30.376	372	248	4	221	582	270	640	5.09e-56	199
MsaG007183	MtrunA17_Chr4g0031741	31.481	378	236	7	221	582	279	649	6.46e-56	199
MsaG007183	MtrunA17_Chr8g0376381	31.688	385	230	11	214	583	156	522	1.60e-55	196
MsaG007183	MtrunA17_Chr7g0238891	28.800	375	254	3	221	583	367	740	3.06e-55	199
MsaG007183	MtrunA17_Chr2g0328341	31.635	373	242	6	221	582	267	637	4.10e-55	197
MsaG007183	MtrunA17_Chr4g0031701	28.684	380	246	6	221	580	249	623	4.20e-52	189
MsaG007183	MtrunA17_Chr4g0057891	32.292	384	234	8	221	584	144	521	4.22e-52	186
MsaG007183	MtrunA17_Chr2g0328431	30.133	375	244	7	221	582	284	653	1.66e-51	187
MsaG007183	MtrunA17_Chr2g0328411	28.912	377	252	5	218	582	281	653	1.92e-51	187
MsaG007183	MtrunA17_Chr3g0110971	30.946	391	221	11	223	583	216	587	3.89e-51	185
MsaG007183	MtrunA17_Chr4g0031731	28.421	380	247	6	221	580	249	623	1.52e-50	184
MsaG007183	MtrunA17_Chr2g0328391	28.836	378	250	6	221	582	294	668	3.27e-50	184
MsaG007183	MtrunA17_Chr7g0245601	32.410	361	229	7	229	583	441	792	1.20e-49	184
MsaG007183	MtrunA17_Chr2g0328401	29.178	353	234	4	221	561	285	633	1.19e-46	173
MsaG007183	MtrunA17_Chr8g0357601	29.581	382	244	7	221	583	177	552	1.87e-45	169
MsaG007183	MtrunA17_Chr3g0085681	26.877	413	244	7	227	583	26	436	2.61e-45	166
MsaG007183	MtrunA17_Chr5g0401131	28.933	356	231	8	249	583	136	490	4.72e-42	158
MsaG007183	MtrunA17_Chr4g0057291	31.143	350	221	9	250	582	315	661	1.28e-41	159
MsaG007183	MtrunA17_Chr2g0328361	28.686	373	228	7	221	582	269	614	2.68e-41	158
MsaG007183	MtrunA17_Chr1g0200401	31.117	376	198	14	250	583	103	459	6.24e-41	154
MsaG007183	MtrunA17_Chr4g0039661	30.878	353	212	10	250	583	216	555	6.21e-39	150
MsaG007183	MtrunA17_Chr4g0038761	29.859	355	226	10	243	583	97	442	2.70e-38	147
MsaG007183	MtrunA17_Chr2g0328371	30.894	246	162	2	297	534	1	246	7.05e-37	137
MsaG007183	MtrunA17_Chr3g0114841	28.412	359	213	11	258	584	155	501	6.47e-36	141
MsaG007183	MtrunA17_Chr2g0294461	25.907	386	258	7	221	583	205	585	3.22e-35	140
MsaG007183	MtrunA17_Chr3g0085361	26.946	334	189	5	304	583	18	350	9.70e-35	134
MsaG007183	MtrunA17_Chr7g0270031	27.457	346	226	8	255	583	217	554	6.32e-33	133
MsaG007183	MtrunA17_Chr2g0294471	25.260	384	260	9	221	583	199	576	8.28e-33	132
MsaG007183	MtrunA17_Chr1g0183641	28.313	332	217	10	262	584	159	478	1.07e-32	131
MsaG007183	MtrunA17_Chr5g0424131	26.761	355	229	10	255	584	152	500	5.62e-32	129
MsaG007183	MtrunA17_Chr2g0329591	26.684	386	245	10	227	583	75	451	1.83e-30	124
MsaG007183	MtrunA17_Chr1g0194621	24.928	345	235	7	258	583	179	518	7.54e-28	117
MsaG007183	MtrunA17_Chr5g0401421	26.791	321	188	7	307	582	127	445	3.45e-27	114
MsaG007183	MtrunA17_Chr4g0012071	25.464	377	245	11	225	584	195	552	2.60e-26	113
MsaG007183	MtrunA17_Chr4g0053901	24.221	417	254	9	223	582	56	467	2.88e-25	109
MsaG007183	MtrunA17_Chr4g0038851	39.007	141	85	1	444	583	329	469	2.01e-24	106
MsaG007183	MtrunA17_Chr4g0038851	29.851	201	134	3	227	421	49	248	3.04e-20	94.0
MsaG007183	MtrunA17_Chr8g0383981	26.496	351	213	15	254	582	168	495	3.43e-24	106
MsaG007183	MtrunA17_Chr5g0396491	35.915	142	90	1	444	584	338	479	2.02e-23	103
MsaG007183	MtrunA17_Chr5g0396491	30.516	213	136	5	227	429	57	267	1.17e-22	101
MsaG007183	MtrunA17_Chr7g0230731	24.668	377	249	10	225	584	371	729	3.99e-22	100
MsaG007183	MtrunA17_Chr7g0230771	24.934	377	248	11	225	584	374	732	9.27e-22	99.8
MsaG007183	MtrunA17_Chr2g0323111	26.857	175	126	2	409	582	132	305	1.48e-16	81.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007183	AT4G17230.1	46.000	600	232	11	1	583	1	525	2.26e-169	492
MsaG007183	AT4G17230.2	46.000	600	232	11	1	583	1	525	2.26e-169	492
MsaG007183	AT5G48150.1	53.488	430	184	5	167	583	64	490	4.99e-157	459
MsaG007183	AT5G48150.4	53.488	430	184	5	167	583	64	490	4.99e-157	459
MsaG007183	AT5G48150.2	53.488	430	184	5	167	583	64	490	4.99e-157	459
MsaG007183	AT5G48150.3	53.488	430	184	5	167	583	64	490	4.99e-157	459
MsaG007183	AT2G04890.1	57.937	378	154	2	210	583	37	413	2.99e-155	451
MsaG007183	AT1G50600.3	51.896	422	187	4	174	583	109	526	4.13e-150	442
MsaG007183	AT1G50600.2	51.896	422	187	4	174	583	184	601	1.58e-149	444
MsaG007183	AT1G50600.1	51.896	422	187	4	174	583	180	597	1.73e-149	444
MsaG007183	AT1G21450.1	43.684	380	201	3	216	583	215	593	9.43e-112	346
MsaG007183	AT3G03450.1	32.888	374	230	9	223	583	180	545	2.44e-58	204
MsaG007183	AT5G17490.1	30.488	492	295	16	124	583	40	516	9.91e-58	202
MsaG007183	AT1G07530.1	31.481	378	237	6	222	582	392	764	1.71e-57	206
MsaG007183	AT5G52510.1	33.333	348	196	6	262	583	303	640	1.04e-56	202
MsaG007183	AT1G14920.1	31.649	376	227	9	223	583	169	529	4.58e-56	198
MsaG007183	AT5G59450.1	29.365	378	251	5	221	583	222	598	9.29e-54	193
MsaG007183	AT1G66350.1	31.720	372	228	12	223	584	152	507	4.80e-53	189
MsaG007183	AT2G29060.2	30.079	379	243	6	222	582	280	654	1.67e-52	191
MsaG007183	AT2G01570.1	31.200	375	230	10	223	583	221	581	1.94e-52	189
MsaG007183	AT2G29060.1	30.079	379	243	6	222	582	317	691	2.14e-52	191
MsaG007183	AT2G37650.2	29.815	379	243	5	221	583	330	701	2.15e-52	191
MsaG007183	AT1G50420.1	28.774	424	235	7	227	584	58	480	3.15e-52	186
MsaG007183	AT2G37650.1	29.815	379	243	5	221	583	342	713	3.20e-52	191
MsaG007183	AT3G46600.2	29.223	373	250	4	223	583	1	371	4.50e-52	183
MsaG007183	AT3G46600.3	29.333	375	251	4	221	583	175	547	6.78e-52	187
MsaG007183	AT3G46600.1	29.333	375	251	4	221	583	207	579	6.98e-52	187
MsaG007183	AT2G29065.1	29.581	382	248	8	221	582	247	627	2.07e-48	179
MsaG007183	AT1G07520.2	29.396	381	249	8	221	582	149	528	4.38e-48	176
MsaG007183	AT1G07520.4	29.396	381	249	8	221	582	149	528	4.38e-48	176
MsaG007183	AT1G07520.1	29.396	381	249	8	221	582	313	692	1.12e-47	177
MsaG007183	AT1G07520.3	29.396	381	249	8	221	582	314	693	1.17e-47	177
MsaG007183	AT3G54220.1	31.129	363	232	8	229	582	296	649	1.48e-44	168
MsaG007183	AT5G66770.1	33.238	349	204	7	254	583	246	584	4.42e-43	163
MsaG007183	AT3G50650.1	31.714	350	210	7	254	583	202	542	9.90e-42	158
MsaG007183	AT1G63100.1	27.937	383	248	8	226	582	248	628	1.25e-38	150
MsaG007183	AT1G63100.2	27.937	383	248	8	226	582	273	653	1.54e-38	150
MsaG007183	AT4G37650.1	28.792	389	239	10	227	583	147	529	1.23e-37	146
MsaG007183	AT5G41920.1	27.642	369	243	9	227	583	44	400	1.92e-37	144
MsaG007183	AT1G55580.1	27.000	300	196	7	304	583	149	445	1.50e-30	125
MsaG007183	AT4G08250.1	25.926	351	236	8	250	582	132	476	4.42e-28	118
MsaG007183	AT3G49950.1	23.269	361	245	8	249	582	52	407	5.33e-23	102
MsaG007183	AT2G45160.1	26.346	353	209	14	259	584	312	640	1.62e-22	102
MsaG007183	AT3G60630.1	24.581	358	212	10	260	584	291	623	8.28e-22	100
MsaG007183	AT4G00150.1	23.656	372	253	12	223	584	205	555	4.25e-20	94.4
MsaG007183	AT4G36710.1	24.093	386	250	13	221	583	120	485	3.69e-18	88.2
MsaG007183	AT3G13840.1	23.120	359	234	11	249	583	170	510	1.56e-17	86.3

Find 109 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGTAAGCAAATTGAAAATA+TGG	0.174043	2:+14713687	None:intergenic
AAGATTTCAATAAAGATTAT+AGG	0.216624	2:-14712926	MsaT007183.1:CDS
TCAAAGAACCAATGTTTCTT+TGG	0.242227	2:-14714477	MsaT007183.1:CDS
TGAGAAAATTGTGGTGAAAA+AGG	0.281191	2:+14714338	None:intergenic
GACATGAACTGTTTGGAAAA+TGG	0.289537	2:-14713028	MsaT007183.1:CDS
AAAGCTCAATTTCTTTCATT+TGG	0.293718	2:+14714234	None:intergenic
ACTGTGATCCTTGTGCAATT+TGG	0.334053	2:+14713601	None:intergenic
GATTTCAGAGCTGGGCTATA+AGG	0.338435	2:-14714102	MsaT007183.1:CDS
CTCATCAACTCATTGCTTGT+TGG	0.342988	2:+14713738	None:intergenic
TTGCAAATCAATTCAAATAA+TGG	0.345919	2:-14714509	MsaT007183.1:CDS
GCTGTCGATGATATCTGAAT+TGG	0.360875	2:+14714055	None:intergenic
TTAACACTATTGAACTCAAA+TGG	0.361949	2:+14713425	None:intergenic
TAAGCACCTAACCTTTGAAT+TGG	0.365266	2:+14713834	None:intergenic
TCTTCTTTCAAGTCTAGCTT+TGG	0.368681	2:+14713957	None:intergenic
GTTGAAAGACATGAACTGTT+TGG	0.373187	2:-14713035	MsaT007183.1:CDS
GACCTCCGTTCGCTCGTAAC+AGG	0.376251	2:-14713539	MsaT007183.1:intron
AATTTGAGACCAATCATATT+CGG	0.388708	2:+14713992	None:intergenic
TGTGCACAGTTTGTATTTGA+TGG	0.403494	2:-14713924	MsaT007183.1:CDS
TTTCTTTGGAAACAAGCAAC+TGG	0.406710	2:-14714463	MsaT007183.1:CDS
GAAAGAAATTGAGCTTTCAT+TGG	0.409492	2:-14714228	MsaT007183.1:CDS
TTCAATAGTGTTAAAATGTA+TGG	0.409922	2:-14713416	MsaT007183.1:CDS
TGAATTAATGATTTCAGAGC+TGG	0.411720	2:-14714111	MsaT007183.1:CDS
TCTGTCTCAAAGACTGTTGC+TGG	0.413091	2:+14714561	None:intergenic
GAATCGGAGATTTCATTGTT+AGG	0.417405	2:-14714080	MsaT007183.1:CDS
GTATGGATGTGAGGTTCAAC+TGG	0.437985	2:-14713399	MsaT007183.1:CDS
ATCAAAAGCTATGAATTCAT+TGG	0.443080	2:+14714403	None:intergenic
AGCTGCCAGTCCAACTTAAA+CGG	0.448434	2:-14714035	MsaT007183.1:CDS
GCCTAAGGTCGTGTTATTTG+TGG	0.450027	2:-14713246	MsaT007183.1:CDS
AGAGCAAGGGTGGAATCATC+GGG	0.455587	2:-14713795	MsaT007183.1:CDS
GGTTCTCCAATTCAAAGGTT+AGG	0.459338	2:-14713840	MsaT007183.1:CDS
TGTAAGCAAATTGAAAATAT+GGG	0.460197	2:+14713688	None:intergenic
GAAATTGAGCTTTCATTGGT+AGG	0.460607	2:-14714224	MsaT007183.1:CDS
GGTGGAAGACTTGATATTGT+AGG	0.469286	2:-14713485	MsaT007183.1:CDS
GGTCGTGTTATTTGTGGAGC+AGG	0.469342	2:-14713240	MsaT007183.1:CDS
GGTACCGATATAGAAGTATT+CGG	0.469425	2:-14714203	MsaT007183.1:CDS
TGCTTCACAAATGACAGCAT+TGG	0.474342	2:+14713659	None:intergenic
GAATAACGTGTTGGGAAAGA+TGG	0.476145	2:-14713874	MsaT007183.1:CDS
GCTGCCGAATACTTCTATAT+CGG	0.477399	2:+14714199	None:intergenic
TCCATGCTCACGCTCTCGTC+CGG	0.480063	2:+14713311	None:intergenic
AAGGTACATCCGAATATGAT+TGG	0.489420	2:-14714001	MsaT007183.1:CDS
GTGAAGGCTACCATTTGAGT+TGG	0.490964	2:+14714169	None:intergenic
CGAGCGAACGGAGGTCCGCC+AGG	0.491974	2:+14713546	None:intergenic
TTATGTGCACATCTTCTGCT+TGG	0.493993	2:-14712857	MsaT007183.1:CDS
CTGTCGATGATATCTGAATT+GGG	0.497389	2:+14714056	None:intergenic
AAGAGCAAGGGTGGAATCAT+CGG	0.498333	2:-14713796	MsaT007183.1:CDS
AGCTGTCTGTCCAACTCAAA+TGG	0.502650	2:-14714179	MsaT007183.1:CDS
GGAAAGATGGTATCGGTTGG+CGG	0.502999	2:-14713861	MsaT007183.1:CDS
GGATTCATGAATAACGTGTT+GGG	0.509988	2:-14713882	MsaT007183.1:CDS
AGGATTCATGAATAACGTGT+TGG	0.512384	2:-14713883	MsaT007183.1:CDS
GGCTACCGTTTAAGTTGGAC+TGG	0.514240	2:+14714030	None:intergenic
AGAGCTGGGCTATAAGGAAT+CGG	0.517165	2:-14714096	MsaT007183.1:CDS
GTGGAGGCTACCGTTTAAGT+TGG	0.523399	2:+14714025	None:intergenic
ATTCTCTTCTTATCATCTCT+AGG	0.523465	2:+14713125	None:intergenic
GATTCTCCTTCATCTTCTAG+TGG	0.524436	2:-14714383	MsaT007183.1:CDS
CATTATCTTGAGATGTACCT+TGG	0.526204	2:+14714147	None:intergenic
CAAAAGAAACGTAGTTCAGC+CGG	0.533280	2:-14714599	MsaT007183.1:CDS
GCTTGTTTCCAAAGAAACAT+TGG	0.537666	2:+14714469	None:intergenic
GTTAGGTGCTTACATGTTGG+AGG	0.539755	2:-14713823	MsaT007183.1:CDS
CTTAAAGTCTCAGCAAACCT+TGG	0.540575	2:+14713188	None:intergenic
GGTATGTGATGCAAAGCAAA+AGG	0.541821	2:+14713332	None:intergenic
GACTGTTGCTGGTAGTATAA+CGG	0.543849	2:+14714572	None:intergenic
CATGCTCTCAAGCATAAACC+TGG	0.546708	2:-14713564	MsaT007183.1:CDS
AAGGTTAGGTGCTTACATGT+TGG	0.546985	2:-14713826	MsaT007183.1:CDS
TTGGCGGTTCTCCAATTCAA+AGG	0.547368	2:-14713845	MsaT007183.1:CDS
TTCTTTGGAAACAAGCAACT+GGG	0.548975	2:-14714462	MsaT007183.1:CDS
CTGGTAGTATAACGGTATAC+CGG	0.553841	2:+14714580	None:intergenic
ACCGGACGAGAGCGTGAGCA+TGG	0.554808	2:-14713312	MsaT007183.1:CDS
CTTGAGATGTACCTTGGTGA+AGG	0.559050	2:+14714153	None:intergenic
AACACAAATGTATCGCCGTT+AGG	0.563179	2:-14714299	MsaT007183.1:CDS
TCTTCACCAGTCTCAAAAGC+CGG	0.563592	2:+14713276	None:intergenic
GGAGGGATTAAGAGCAAGGG+TGG	0.565223	2:-14713805	MsaT007183.1:CDS
GAGTCATAGTGAGAAAATTG+TGG	0.570992	2:+14714329	None:intergenic
CATATTCGGATGTACCTTGG+TGG	0.571085	2:+14714006	None:intergenic
AATCATATTCGGATGTACCT+TGG	0.577241	2:+14714003	None:intergenic
TGTTGGAGGGATTAAGAGCA+AGG	0.578699	2:-14713809	MsaT007183.1:CDS
TTAGGTGCTTACATGTTGGA+GGG	0.580819	2:-14713822	MsaT007183.1:CDS
TCCACAAATAACACGACCTT+AGG	0.582649	2:+14713245	None:intergenic
GCATGGAGAATCATAGAGAC+CGG	0.589076	2:-14713295	MsaT007183.1:CDS
GCATTACCACTAGAAGATGA+AGG	0.589681	2:+14714377	None:intergenic
GTGGTAATGCATCCAACACC+AGG	0.589942	2:-14714364	MsaT007183.1:CDS
CGATACATTTGTGTTGTCAG+AGG	0.591652	2:+14714307	None:intergenic
CGTTAACATCATAGCTTGTG+AGG	0.593625	2:-14713069	MsaT007183.1:CDS
ATTCGGATGTACCTTGGTGG+AGG	0.599110	2:+14714009	None:intergenic
CGTGTTGGGAAAGATGGTAT+CGG	0.599692	2:-14713868	MsaT007183.1:CDS
TTGGGAAAGATGGTATCGGT+TGG	0.601702	2:-14713864	MsaT007183.1:CDS
GCCGAGGTACTCAACGGTAA+CGG	0.606602	2:+14712975	None:intergenic
GGCTACTTGAGAAGATTCCA+AGG	0.613501	2:+14714424	None:intergenic
GAATTAATGATTTCAGAGCT+GGG	0.614508	2:-14714110	MsaT007183.1:CDS
GTTAACATCATAGCTTGTGA+GGG	0.618537	2:-14713068	MsaT007183.1:CDS
CGATACCTGTTACGAGCGAA+CGG	0.618944	2:+14713534	None:intergenic
ACCGTTACCGTTGAGTACCT+CGG	0.619386	2:-14712976	MsaT007183.1:CDS
TCAATCGCCGAGGTACTCAA+CGG	0.629420	2:+14712969	None:intergenic
ATGAACTGTTTGGAAAATGG+AGG	0.640291	2:-14713025	MsaT007183.1:CDS
GCACTAGAGTAAACACCTAA+CGG	0.650576	2:+14714284	None:intergenic
ATTGACTTCCAAATTGCACA+AGG	0.655189	2:-14713609	MsaT007183.1:CDS
GTTAGGTGTTTACTCTAGTG+CGG	0.655711	2:-14714282	MsaT007183.1:CDS
TGTTAAAATGTATGGATGTG+AGG	0.656156	2:-14713408	MsaT007183.1:CDS
GTTGGAGGGATTAAGAGCAA+GGG	0.658974	2:-14713808	MsaT007183.1:CDS
ATGTTGCTATCAATTTAGCG+TGG	0.662028	2:-14712890	MsaT007183.1:CDS
AATGTTTGAATCAATTGATG+TGG	0.662206	2:-14713153	MsaT007183.1:CDS
GTTTACTCTAGTGCGGACGA+TGG	0.696726	2:-14714275	MsaT007183.1:CDS
TACCTGTTACGAGCGAACGG+AGG	0.704599	2:+14713537	None:intergenic
TAATGCAGAACAACACTGTG+TGG	0.712966	2:-14713102	MsaT007183.1:CDS
TCTAACTGAATCAATCGCCG+AGG	0.732559	2:+14712959	None:intergenic
GCTCTCAAGCATAAACCTGG+CGG	0.733186	2:-14713561	MsaT007183.1:CDS
TCAAATGGTAGCCTTCACCA+AGG	0.752690	2:-14714164	MsaT007183.1:CDS
GAGCAAGGGTGGAATCATCG+GGG	0.766989	2:-14713794	MsaT007183.1:CDS
TTAAACGGTAGCCTCCACCA+AGG	0.778392	2:-14714020	MsaT007183.1:CDS
AAATTGCACAAGGATCACAG+TGG	0.820097	2:-14713599	MsaT007183.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	14712845	14714633	14712845	ID=MsaG007183
Chr2	mRNA	14712845	14714633	14712845	ID=MsaT007183.1;Parent=MsaG007183
Chr2	exon	14712845	14713508	14712845	ID=MsaT007183.1.exon2;Parent=MsaT007183.1
Chr2	CDS	14712845	14713508	14712845	ID=cds.MsaT007183.1;Parent=MsaT007183.1
Chr2	exon	14713540	14714633	14713540	ID=MsaT007183.1.exon1;Parent=MsaT007183.1
Chr2	CDS	14713540	14714633	14713540	ID=cds.MsaT007183.1;Parent=MsaT007183.1

Gene Sequence

>MsaT007183.1

ATGTATACTTCTCAAAAGAAACGTAGTTCAGCCGGTATACCGTTATACTACCAGCAACAGTCTTTGAGACAGATTGATTCAAACAACAATCGTTTCAAAACGTTGCAAATCAATTCAAATAATGGTAGTATCAGTCAAAGAACCAATGTTTCTTTGGAAACAAGCAACTGGGAGAAGCAATTTTGTACCTTGGAATCTTCTCAAGTAGCCAATGAATTCATAGCTTTTGATTCTCCTTCATCTTCTAGTGGTAATGCATCCAACACCAGGAATCCTTTTTCACCACAATTTTCTCACTATGACTCCTCTGACAACACAAATGTATCGCCGTTAGGTGTTTACTCTAGTGCGGACGATGGTAGCTTTGAATTGAAGCACCAAATGAAAGAAATTGAGCTTTCATTGGTAGGTACCGATATAGAAGTATTCGGCAGCTGTCTGTCCAACTCAAATGGTAGCCTTCACCAAGGTACATCTCAAGATAATGAGTTTCAAATTGATGAATTAATGATTTCAGAGCTGGGCTATAAGGAATCGGAGATTTCATTGTTAGGTCCCAATTCAGATATCATCGACAGCTGCCAGTCCAACTTAAACGGTAGCCTCCACCAAGGTACATCCGAATATGATTGGTCTCAAATTGTAGAAATGATTCCAAAGCTAGACTTGAAAGAAGAACTTATTAGATGTGCACAGTTTGTATTTGATGGTGATTTTCAAAAAGCAATAGGATTCATGAATAACGTGTTGGGAAAGATGGTATCGGTTGGCGGTTCTCCAATTCAAAGGTTAGGTGCTTACATGTTGGAGGGATTAAGAGCAAGGGTGGAATCATCGGGGAGTGCAATTTATAATGCGTTGAAATGTGAAGAACCAACAAGCAATGAGTTGATGAGTGCTATGCACACTTTGTATCAGATTTGCCCATATTTTCAATTTGCTTACATATCATCCAATGCTGTCATTTGTGAAGCAATGCAAAATGAATCAAGAATTCATATAATTGACTTCCAAATTGCACAAGGATCACAGTGGATGTTACTTTTGCATGCTCTCAAGCATAAACCTGGCGGACCTCCGTTCGCTCGTAACAGAGGTGGAAGACTTGATATTGTAGGAAAAAAGCTAGAAGATTGTGCAAAAACTTGTAGAGTTCCATTTGAGTTCAATAGTGTTAAAATGTATGGATGTGAGGTTCAACTGGAAGATTTTGAAGTTCAACATGATGAAGTTCTTGCTGTGAATTTTCCTTTTGCTTTGCATCACATACCGGACGAGAGCGTGAGCATGGAGAATCATAGAGACCGGCTTTTGAGACTGGTGAAGATTTTGTCGCCTAAGGTCGTGTTATTTGTGGAGCAGGAGTCAAACACAAACACATCTCCATTTTTACCAAGGTTTGCTGAGACTTTAAGTTATTACACTGCAATGTTTGAATCAATTGATGTGGCTCTTCCTAGAGATGATAAGAAGAGAATTAATGCAGAACAACACTGTGTGGCTCGCGATATCGTTAACATCATAGCTTGTGAGGGAGATGAGAGAGTTGAAAGACATGAACTGTTTGGAAAATGGAGGAAAAGATTTTCAATGGCGGGTTTTGTACCGTTACCGTTGAGTACCTCGGCGATTGATTCAGTTAGAACTCTCTTGAAAGATTTCAATAAAGATTATAGGATTGAAGAAACAGATGTTGCTATCAATTTAGCGTGGAAGAGTAAAGTTATGTGCACATCTTCTGCTTGGAGATGTTATTGA

Protein sequence

>MsaT007183.1

MYTSQKKRSSAGIPLYYQQQSLRQIDSNNNRFKTLQINSNNGSISQRTNVSLETSNWEKQFCTLESSQVANEFIAFDSPSSSSGNASNTRNPFSPQFSHYDSSDNTNVSPLGVYSSADDGSFELKHQMKEIELSLVGTDIEVFGSCLSNSNGSLHQGTSQDNEFQIDELMISELGYKESEISLLGPNSDIIDSCQSNLNGSLHQGTSEYDWSQIVEMIPKLDLKEELIRCAQFVFDGDFQKAIGFMNNVLGKMVSVGGSPIQRLGAYMLEGLRARVESSGSAIYNALKCEEPTSNELMSAMHTLYQICPYFQFAYISSNAVICEAMQNESRIHIIDFQIAQGSQWMLLLHALKHKPGGPPFARNRGGRLDIVGKKLEDCAKTCRVPFEFNSVKMYGCEVQLEDFEVQHDEVLAVNFPFALHHIPDESVSMENHRDRLLRLVKILSPKVVLFVEQESNTNTSPFLPRFAETLSYYTAMFESIDVALPRDDKKRINAEQHCVARDIVNIIACEGDERVERHELFGKWRKRFSMAGFVPLPLSTSAIDSVRTLLKDFNKDYRIEETDVAINLAWKSKVMCTSSAWRCY*