Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007197 | XP_024631359.1 | 94.261 | 697 | 38 | 1 | 1 | 697 | 1 | 695 | 0.0 | 1380 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007197 | sp|Q9LKR4|FRS10_ARATH | 56.716 | 670 | 284 | 3 | 5 | 670 | 8 | 675 | 0.0 | 787 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007197 | tr|A0A396J3Q9|A0A396J3Q9_MEDTR | 94.261 | 697 | 38 | 1 | 1 | 697 | 1 | 695 | 0.0 | 1380 |
Gene ID | Type | Classification |
---|---|---|
MsaG007197 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007197 | MtrunA17_Chr2g0290391 | 94.261 | 697 | 38 | 1 | 1 | 697 | 1 | 695 | 0.0 | 1380 |
MsaG007197 | MtrunA17_Chr1g0198761 | 46.361 | 632 | 306 | 6 | 54 | 668 | 48 | 663 | 0.0 | 567 |
MsaG007197 | MtrunA17_Chr2g0276841 | 43.269 | 624 | 334 | 5 | 53 | 668 | 70 | 681 | 0.0 | 541 |
MsaG007197 | MtrunA17_Chr2g0294841 | 39.510 | 653 | 372 | 5 | 27 | 668 | 21 | 661 | 1.43e-167 | 499 |
MsaG007197 | MtrunA17_Chr5g0431001 | 45.012 | 431 | 220 | 3 | 52 | 475 | 60 | 480 | 9.32e-132 | 398 |
MsaG007197 | MtrunA17_Chr1g0202341 | 30.903 | 576 | 366 | 11 | 51 | 612 | 49 | 606 | 2.04e-74 | 253 |
MsaG007197 | MtrunA17_Chr5g0448761 | 30.289 | 657 | 409 | 18 | 51 | 678 | 58 | 694 | 1.40e-73 | 253 |
MsaG007197 | MtrunA17_Chr6g0458391 | 27.911 | 584 | 353 | 14 | 53 | 613 | 225 | 763 | 1.96e-58 | 211 |
MsaG007197 | MtrunA17_Chr6g0458391 | 32.031 | 128 | 77 | 4 | 51 | 175 | 89 | 209 | 5.35e-11 | 66.2 |
MsaG007197 | MtrunA17_Chr5g0440451 | 26.395 | 663 | 415 | 18 | 53 | 677 | 43 | 670 | 5.38e-58 | 211 |
MsaG007197 | MtrunA17_Chr3g0082121 | 27.769 | 605 | 381 | 16 | 32 | 616 | 23 | 591 | 5.70e-58 | 208 |
MsaG007197 | MtrunA17_Chr2g0287651 | 25.659 | 569 | 388 | 11 | 59 | 612 | 81 | 629 | 1.16e-57 | 210 |
MsaG007197 | MtrunA17_Chr5g0441581 | 27.273 | 616 | 389 | 15 | 30 | 623 | 9 | 587 | 1.25e-57 | 207 |
MsaG007197 | MtrunA17_Chr1g0203051 | 26.288 | 563 | 370 | 12 | 59 | 602 | 85 | 621 | 4.91e-57 | 205 |
MsaG007197 | MtrunA17_Chr1g0207551 | 27.383 | 577 | 386 | 16 | 53 | 616 | 34 | 590 | 4.96e-55 | 202 |
MsaG007197 | MtrunA17_Chr8g0363841 | 26.990 | 578 | 382 | 11 | 54 | 612 | 18 | 574 | 2.49e-54 | 198 |
MsaG007197 | MtrunA17_Chr2g0329031 | 28.669 | 586 | 353 | 16 | 50 | 610 | 11 | 556 | 5.45e-54 | 198 |
MsaG007197 | MtrunA17_Chr3g0080351 | 25.879 | 626 | 402 | 18 | 51 | 652 | 74 | 661 | 6.96e-54 | 199 |
MsaG007197 | MtrunA17_Chr2g0287061 | 27.428 | 587 | 344 | 17 | 51 | 620 | 181 | 702 | 2.55e-53 | 197 |
MsaG007197 | MtrunA17_Chr2g0324011 | 23.966 | 580 | 409 | 7 | 53 | 618 | 10 | 571 | 3.54e-49 | 182 |
MsaG007197 | MtrunA17_Chr2g0296781 | 25.000 | 584 | 381 | 17 | 57 | 613 | 1 | 554 | 4.53e-47 | 178 |
MsaG007197 | MtrunA17_Chr3g0118611 | 29.870 | 385 | 250 | 6 | 240 | 610 | 118 | 496 | 4.52e-46 | 175 |
MsaG007197 | MtrunA17_Chr5g0448511 | 28.861 | 395 | 268 | 7 | 243 | 625 | 15 | 408 | 6.22e-45 | 169 |
MsaG007197 | MtrunA17_Chr6g0477261 | 26.898 | 461 | 294 | 13 | 177 | 613 | 2 | 443 | 2.59e-41 | 160 |
MsaG007197 | MtrunA17_Chr2g0291581 | 25.210 | 595 | 387 | 16 | 52 | 623 | 70 | 629 | 1.48e-39 | 155 |
MsaG007197 | MtrunA17_Chr1g0203721 | 23.102 | 619 | 419 | 16 | 30 | 616 | 31 | 624 | 1.84e-39 | 156 |
MsaG007197 | MtrunA17_Chr1g0196541 | 24.407 | 590 | 375 | 15 | 57 | 612 | 1 | 553 | 2.13e-39 | 155 |
MsaG007197 | MtrunA17_Chr2g0291591 | 24.053 | 449 | 316 | 10 | 41 | 486 | 52 | 478 | 3.53e-33 | 135 |
MsaG007197 | MtrunA17_Chr1g0164591 | 26.562 | 320 | 214 | 5 | 141 | 459 | 9 | 308 | 6.81e-30 | 120 |
MsaG007197 | MtrunA17_Chr3g0081281 | 44.660 | 103 | 47 | 1 | 194 | 296 | 1 | 93 | 2.81e-23 | 94.7 |
MsaG007197 | MtrunA17_Chr7g0258861 | 26.087 | 299 | 194 | 8 | 53 | 343 | 10 | 289 | 6.66e-23 | 100 |
MsaG007197 | MtrunA17_Chr7g0233911 | 33.835 | 133 | 82 | 3 | 28 | 157 | 7 | 136 | 4.14e-13 | 69.3 |
MsaG007197 | MtrunA17_Chr2g0308841 | 25.692 | 253 | 164 | 8 | 415 | 648 | 16 | 263 | 1.03e-12 | 68.9 |
MsaG007197 | MtrunA17_Chr2g0331371 | 38.235 | 102 | 60 | 2 | 65 | 165 | 67 | 166 | 1.22e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007197 | AT5G28530.3 | 56.907 | 666 | 285 | 2 | 5 | 670 | 8 | 671 | 0.0 | 790 |
MsaG007197 | AT5G28530.2 | 56.907 | 666 | 285 | 2 | 5 | 670 | 8 | 671 | 0.0 | 790 |
MsaG007197 | AT5G28530.1 | 56.716 | 670 | 284 | 3 | 5 | 670 | 8 | 675 | 0.0 | 787 |
MsaG007197 | AT5G28530.5 | 50.300 | 666 | 266 | 4 | 5 | 670 | 8 | 608 | 0.0 | 660 |
MsaG007197 | AT5G28530.4 | 50.149 | 670 | 265 | 5 | 5 | 670 | 8 | 612 | 0.0 | 656 |
MsaG007197 | AT1G10240.2 | 42.406 | 665 | 354 | 8 | 30 | 678 | 24 | 675 | 0.0 | 546 |
MsaG007197 | AT1G10240.1 | 42.406 | 665 | 354 | 8 | 30 | 678 | 24 | 675 | 0.0 | 546 |
MsaG007197 | AT4G38180.1 | 30.743 | 592 | 380 | 12 | 51 | 627 | 71 | 647 | 1.94e-70 | 245 |
MsaG007197 | AT4G15090.1 | 26.553 | 644 | 422 | 15 | 51 | 670 | 49 | 665 | 1.52e-62 | 224 |
MsaG007197 | AT4G15090.5 | 26.553 | 644 | 422 | 15 | 51 | 670 | 49 | 665 | 1.52e-62 | 224 |
MsaG007197 | AT4G15090.3 | 26.553 | 644 | 422 | 15 | 51 | 670 | 49 | 665 | 1.52e-62 | 224 |
MsaG007197 | AT4G15090.2 | 26.553 | 644 | 422 | 15 | 51 | 670 | 49 | 665 | 1.52e-62 | 224 |
MsaG007197 | AT4G15090.4 | 26.553 | 644 | 422 | 15 | 51 | 670 | 49 | 665 | 1.52e-62 | 224 |
MsaG007197 | AT2G27110.2 | 27.184 | 618 | 376 | 18 | 30 | 622 | 19 | 587 | 1.39e-56 | 207 |
MsaG007197 | AT2G27110.1 | 27.184 | 618 | 376 | 18 | 30 | 622 | 19 | 587 | 1.39e-56 | 207 |
MsaG007197 | AT3G06250.2 | 26.667 | 615 | 354 | 18 | 27 | 612 | 155 | 701 | 4.53e-51 | 190 |
MsaG007197 | AT3G06250.1 | 26.667 | 615 | 354 | 18 | 27 | 612 | 155 | 701 | 4.53e-51 | 190 |
MsaG007197 | AT3G06250.3 | 26.667 | 615 | 354 | 18 | 27 | 612 | 155 | 701 | 4.53e-51 | 190 |
MsaG007197 | AT3G22170.2 | 25.589 | 594 | 366 | 15 | 51 | 613 | 68 | 616 | 3.38e-50 | 188 |
MsaG007197 | AT3G22170.1 | 25.589 | 594 | 366 | 15 | 51 | 613 | 68 | 616 | 3.38e-50 | 188 |
MsaG007197 | AT2G27110.3 | 30.467 | 407 | 258 | 10 | 234 | 622 | 43 | 442 | 3.17e-49 | 184 |
MsaG007197 | AT5G18960.2 | 27.258 | 598 | 357 | 19 | 31 | 612 | 190 | 725 | 5.81e-49 | 184 |
MsaG007197 | AT5G18960.1 | 27.258 | 598 | 357 | 19 | 31 | 612 | 190 | 725 | 5.81e-49 | 184 |
MsaG007197 | AT1G76320.3 | 26.138 | 681 | 421 | 23 | 57 | 696 | 1 | 640 | 4.91e-48 | 180 |
MsaG007197 | AT1G76320.2 | 26.067 | 656 | 408 | 21 | 57 | 679 | 1 | 612 | 1.18e-47 | 180 |
MsaG007197 | AT1G76320.1 | 26.067 | 656 | 408 | 21 | 57 | 679 | 1 | 612 | 1.77e-47 | 179 |
MsaG007197 | AT1G76320.4 | 26.067 | 656 | 408 | 21 | 57 | 679 | 1 | 612 | 1.77e-47 | 179 |
MsaG007197 | AT1G52520.1 | 24.730 | 647 | 422 | 22 | 52 | 668 | 84 | 695 | 1.32e-41 | 162 |
MsaG007197 | AT2G32250.5 | 25.393 | 445 | 311 | 10 | 258 | 685 | 187 | 627 | 2.76e-39 | 155 |
MsaG007197 | AT2G32250.8 | 25.393 | 445 | 311 | 10 | 258 | 685 | 146 | 586 | 4.20e-39 | 155 |
MsaG007197 | AT2G32250.6 | 25.393 | 445 | 311 | 10 | 258 | 685 | 187 | 627 | 4.60e-39 | 155 |
MsaG007197 | AT2G32250.1 | 25.393 | 445 | 311 | 10 | 258 | 685 | 187 | 627 | 4.60e-39 | 155 |
MsaG007197 | AT2G32250.3 | 25.393 | 445 | 311 | 10 | 258 | 685 | 187 | 627 | 4.60e-39 | 155 |
MsaG007197 | AT2G32250.2 | 25.393 | 445 | 311 | 10 | 258 | 685 | 187 | 627 | 4.69e-39 | 155 |
MsaG007197 | AT2G32250.4 | 25.393 | 445 | 311 | 10 | 258 | 685 | 187 | 627 | 4.69e-39 | 155 |
MsaG007197 | AT2G32250.7 | 25.393 | 445 | 311 | 10 | 258 | 685 | 146 | 586 | 5.09e-39 | 154 |
MsaG007197 | AT4G19990.3 | 24.631 | 609 | 374 | 14 | 56 | 632 | 24 | 579 | 1.35e-38 | 153 |
MsaG007197 | AT4G19990.4 | 24.631 | 609 | 374 | 14 | 56 | 632 | 24 | 579 | 1.35e-38 | 153 |
MsaG007197 | AT4G19990.7 | 24.631 | 609 | 374 | 14 | 56 | 632 | 38 | 593 | 1.48e-38 | 153 |
MsaG007197 | AT4G19990.5 | 24.631 | 609 | 374 | 14 | 56 | 632 | 24 | 579 | 1.51e-38 | 153 |
MsaG007197 | AT4G19990.6 | 24.631 | 609 | 374 | 14 | 56 | 632 | 24 | 579 | 1.73e-38 | 153 |
MsaG007197 | AT4G19990.2 | 24.631 | 609 | 374 | 14 | 56 | 632 | 24 | 579 | 1.73e-38 | 153 |
MsaG007197 | AT1G80010.1 | 23.468 | 669 | 439 | 19 | 28 | 657 | 72 | 706 | 4.44e-38 | 151 |
MsaG007197 | AT4G19990.1 | 24.105 | 531 | 335 | 11 | 119 | 632 | 43 | 522 | 9.13e-34 | 138 |
MsaG007197 | AT4G38170.1 | 26.446 | 363 | 254 | 6 | 272 | 622 | 45 | 406 | 9.22e-34 | 137 |
Find 133 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCCAAATGGTTTCTGATTT+TGG | 0.102866 | 2:-14864530 | MsaT007197.1:CDS |
CAGAGGAATTTGAACTTAAA+TGG | 0.181226 | 2:-14864553 | MsaT007197.1:CDS |
TTATCTGCTTTCACCGATTC+TGG | 0.206477 | 2:+14865770 | None:intergenic |
TCTTATCGATCGATCACTTA+TGG | 0.237164 | 2:-14864990 | MsaT007197.1:CDS |
AGGTGGACATTTGTCTTTCT+TGG | 0.238238 | 2:-14865264 | MsaT007197.1:CDS |
CCATTTGCCTTCCTCTTAAC+CGG | 0.251085 | 2:+14865557 | None:intergenic |
AAGCCTTCAAACTAGCTATT+TGG | 0.254902 | 2:+14863274 | None:intergenic |
CGTGCATAATCACGAGCTTT+TGG | 0.255977 | 2:-14865423 | MsaT007197.1:CDS |
TGTATTCAGTTCGAGCATAT+TGG | 0.297881 | 2:-14864478 | MsaT007197.1:CDS |
ACCTGCTTATCGGAAGATTC+AGG | 0.316823 | 2:-14865378 | MsaT007197.1:CDS |
GAAAAGGGAAAATGATGTTT+TGG | 0.322914 | 2:-14865171 | MsaT007197.1:CDS |
GTATTCAGTTCGAGCATATT+GGG | 0.339529 | 2:-14864477 | MsaT007197.1:CDS |
GCTTTCGAAAGCTGGGTTTC+CGG | 0.342293 | 2:-14865330 | MsaT007197.1:CDS |
ATACTCTTGCTTTCGAAAGC+TGG | 0.354980 | 2:-14865338 | MsaT007197.1:CDS |
AAATCGAAAGAAGGTTATTC+AGG | 0.356354 | 2:-14865216 | MsaT007197.1:CDS |
TTCTTTCATCAGTTCTTTGC+GGG | 0.358476 | 2:+14863387 | None:intergenic |
ATTGAATGTGGATTTAAATT+CGG | 0.362006 | 2:+14864598 | None:intergenic |
TGCAAGGAATTTGAATCATC+GGG | 0.363156 | 2:-14863631 | MsaT007197.1:CDS |
TACCAAACCACACTCCAAAA+AGG | 0.366681 | 2:+14864964 | None:intergenic |
CTCAGGAAATTCACTTCTAA+TGG | 0.369848 | 2:+14864700 | None:intergenic |
AACAATGTCCCTGTGGAGAT+TGG | 0.391277 | 2:-14865844 | MsaT007197.1:CDS |
TTAAACACCATTCCAACATA+AGG | 0.399971 | 2:+14865719 | None:intergenic |
TCTAGAATTAGCCCTCAATT+AGG | 0.402768 | 2:-14865623 | MsaT007197.1:CDS |
AGGCATTGCTTAATGAGAAA+AGG | 0.415782 | 2:-14865187 | MsaT007197.1:CDS |
GTCATCATCTGCTTCTTTCG+CGG | 0.417036 | 2:+14865127 | None:intergenic |
TCTAATGGCATCTTTAAGTC+CGG | 0.417527 | 2:+14864715 | None:intergenic |
TAAACACCATTCCAACATAA+GGG | 0.418566 | 2:+14865720 | None:intergenic |
CCGGGTTTGCCCCGGTTAAG+AGG | 0.420690 | 2:-14865568 | MsaT007197.1:CDS |
GAAAATATAGCTTGGTCATA+TGG | 0.423296 | 2:-14865065 | MsaT007197.1:CDS |
CCACGTTTAAAGATCGTTCT+CGG | 0.425296 | 2:+14863524 | None:intergenic |
GACATCTTCCTTTCATGAAC+CGG | 0.427391 | 2:+14864765 | None:intergenic |
GAAAATGCTTGAGCTTGAAA+AGG | 0.428355 | 2:-14865294 | MsaT007197.1:CDS |
GTCCAAAATCAGAAACCATT+TGG | 0.428679 | 2:+14864528 | None:intergenic |
ATTTCTCAGCAATAAAACTT+TGG | 0.431448 | 2:+14863485 | None:intergenic |
CGGTTAAGAGGAAGGCAAAT+GGG | 0.435855 | 2:-14865556 | MsaT007197.1:CDS |
TGCTAAAATGTATCTGTCTA+AGG | 0.437024 | 2:-14865492 | MsaT007197.1:CDS |
ACAAATACTACTTAAGTAGA+TGG | 0.437071 | 2:-14863549 | MsaT007197.1:CDS |
TACTCTTGCTTTCGAAAGCT+GGG | 0.437822 | 2:-14865337 | MsaT007197.1:CDS |
GTTAATAAGAATGTCGTGTT+TGG | 0.444083 | 2:-14865035 | MsaT007197.1:CDS |
GAGCTTGAAAAGGGAATTCA+AGG | 0.444538 | 2:-14865284 | MsaT007197.1:CDS |
CGATGCTTTGCAGCAAGAGT+TGG | 0.446058 | 2:-14863779 | MsaT007197.1:CDS |
CTACTTAAGTAGTATTTGTC+GGG | 0.448293 | 2:+14863553 | None:intergenic |
CATTTGCCTTCCTCTTAACC+GGG | 0.453188 | 2:+14865558 | None:intergenic |
CTTCAAAAGACGTATGGATT+CGG | 0.455725 | 2:-14865871 | MsaT007197.1:CDS |
ACATTTGTCTTTCTTGGAAA+GGG | 0.456261 | 2:-14865258 | MsaT007197.1:CDS |
CAACATACAAATCTTAGAAC+TGG | 0.458267 | 2:-14863850 | MsaT007197.1:CDS |
CTCCGCGCATGCTCTTCAAT+TGG | 0.460247 | 2:+14863823 | None:intergenic |
AACCTTCTCATTCTCATCCA+TGG | 0.461287 | 2:+14865088 | None:intergenic |
GTTCTTTCATCAGTTCTTTG+CGG | 0.462201 | 2:+14863386 | None:intergenic |
CTAATGGCATCTTTAAGTCC+GGG | 0.464686 | 2:+14864716 | None:intergenic |
CCTTGATGCAGGTGTTTCTC+CGG | 0.465256 | 2:-14864784 | MsaT007197.1:intron |
TTCTAAACAAGGTATCTAGT+TGG | 0.469074 | 2:-14864649 | MsaT007197.1:CDS |
ATGGGGAGCATCATAGAGAT+AGG | 0.469186 | 2:-14865538 | MsaT007197.1:CDS |
TGTGTTATGGCTACCAGAAA+AGG | 0.470494 | 2:-14863671 | MsaT007197.1:CDS |
TCCTGAATCTTCCGATAAGC+AGG | 0.470635 | 2:+14865377 | None:intergenic |
GGCATTGCTTAATGAGAAAA+GGG | 0.476407 | 2:-14865186 | MsaT007197.1:CDS |
TTATCGATCCGGGTTTGCCC+CGG | 0.478798 | 2:-14865576 | MsaT007197.1:CDS |
AGGTTCTGCAGCACCAGAAT+CGG | 0.478841 | 2:-14865783 | MsaT007197.1:CDS |
CTGTCTAAGGAGGTTGTTGA+CGG | 0.480756 | 2:-14865479 | MsaT007197.1:CDS |
GATATCATTACCCCTTATGT+TGG | 0.483803 | 2:-14865731 | MsaT007197.1:CDS |
CCTCTTAACCGGGGCAAACC+CGG | 0.485059 | 2:+14865568 | None:intergenic |
CCGGTTAAGAGGAAGGCAAA+TGG | 0.486458 | 2:-14865557 | MsaT007197.1:CDS |
TCTACTTAAGTAGTATTTGT+CGG | 0.487675 | 2:+14863552 | None:intergenic |
GACATTTGTCTTTCTTGGAA+AGG | 0.490686 | 2:-14865259 | MsaT007197.1:CDS |
TGTCTAAGGAGGTTGTTGAC+GGG | 0.496899 | 2:-14865478 | MsaT007197.1:CDS |
TGAGACTAAACACGTCATTC+CGG | 0.497303 | 2:-14864681 | MsaT007197.1:CDS |
TCTAGATCTTGCTTTCCTCA+TGG | 0.497710 | 2:+14865640 | None:intergenic |
CGCTTGTAAACGCCTAATTG+AGG | 0.499806 | 2:+14865611 | None:intergenic |
TTGCAAGGAATTTGAATCAT+CGG | 0.500581 | 2:-14863632 | MsaT007197.1:CDS |
TGAACTTAAATGGAGCCAAA+TGG | 0.503893 | 2:-14864543 | MsaT007197.1:CDS |
AAAATGCTTGAGCTTGAAAA+GGG | 0.510249 | 2:-14865293 | MsaT007197.1:CDS |
TGCAAAGCATCGAAAGCATA+AGG | 0.512230 | 2:+14863790 | None:intergenic |
CATTACCCCTTATGTTGGAA+TGG | 0.512394 | 2:-14865726 | MsaT007197.1:CDS |
AGGTCAGATAGAATTGTTTG+TGG | 0.513189 | 2:+14864743 | None:intergenic |
CATAAAAGCATATATAGACT+TGG | 0.513319 | 2:+14864400 | None:intergenic |
AATCATCGGGAATATTATGC+AGG | 0.520423 | 2:-14863618 | MsaT007197.1:CDS |
CTTTGTGCAAAATCGAAAGA+AGG | 0.525916 | 2:-14865225 | MsaT007197.1:CDS |
CAATGGCTTCAAAAGACGTA+TGG | 0.527901 | 2:-14865877 | MsaT007197.1:CDS |
CATCTTTAAGTCCGGGGTCA+AGG | 0.529096 | 2:+14864723 | None:intergenic |
GTTTGCCCCGGTTAAGAGGA+AGG | 0.530147 | 2:-14865564 | MsaT007197.1:CDS |
GCTTGTAAACGCCTAATTGA+GGG | 0.531080 | 2:+14865612 | None:intergenic |
GGAATGACGTGTTTAGTCTC+AGG | 0.531762 | 2:+14864683 | None:intergenic |
ATGGAGAGCGACATGTGTTA+TGG | 0.535219 | 2:-14863684 | MsaT007197.1:CDS |
GAGGGTGATGATTCTGATGA+AGG | 0.535697 | 2:-14865803 | MsaT007197.1:CDS |
TTCAGAATCATCAATTACAA+AGG | 0.545164 | 2:-14863425 | MsaT007197.1:CDS |
GTGTTTCTCCGGTTCATGAA+AGG | 0.545182 | 2:-14864773 | MsaT007197.1:CDS |
ACTTACTAGAATTCTTAATG+AGG | 0.548103 | 2:-14863365 | MsaT007197.1:CDS |
GCTACATCTGAGCTGTATAA+CGG | 0.548265 | 2:-14863739 | MsaT007197.1:CDS |
GATAGGAAATCAGTGAGGTG+TGG | 0.551495 | 2:-14865521 | MsaT007197.1:CDS |
ACCGATGGGGTCGAGACCGA+TGG | 0.554843 | 2:-14863325 | MsaT007197.1:CDS |
GAGATATGTCTAAGACCGAT+GGG | 0.555361 | 2:-14863339 | MsaT007197.1:CDS |
GAAGGTTATTCAGGAGAATG+AGG | 0.556385 | 2:-14865207 | MsaT007197.1:CDS |
GTAACACTTCCAATCTCCAC+AGG | 0.556656 | 2:+14865835 | None:intergenic |
AGAAGGTTGAAAATATAGCT+TGG | 0.556814 | 2:-14865073 | MsaT007197.1:CDS |
AGAGATATGTCTAAGACCGA+TGG | 0.562467 | 2:-14863340 | MsaT007197.1:CDS |
AAATAACCTCTCACATAGGA+TGG | 0.565070 | 2:+14864452 | None:intergenic |
ATTCATGCTGCAAACTCCAT+CGG | 0.569005 | 2:+14863309 | None:intergenic |
ATTCTATCTGACCTTGACCC+CGG | 0.577694 | 2:-14864734 | MsaT007197.1:CDS |
ACAAATACTCTGCTCTTGCA+AGG | 0.578215 | 2:-14863647 | MsaT007197.1:CDS |
TACCATGGATGAGAATGAGA+AGG | 0.581496 | 2:-14865090 | MsaT007197.1:CDS |
CTTTCTTGGAAAGGGATGTG+AGG | 0.596394 | 2:-14865250 | MsaT007197.1:CDS |
TGAGTCTCCTTATGTGATTG+AGG | 0.597080 | 2:+14863871 | None:intergenic |
TACCAATTGAAGAGCATGCG+CGG | 0.607691 | 2:-14863825 | MsaT007197.1:CDS |
TAATGGCATCTTTAAGTCCG+GGG | 0.609613 | 2:+14864717 | None:intergenic |
GATTTAAATTCGGCATAACG+AGG | 0.612578 | 2:+14864608 | None:intergenic |
GTCTAAGGAGGTTGTTGACG+GGG | 0.619389 | 2:-14865477 | MsaT007197.1:CDS |
AAACACCATTCCAACATAAG+GGG | 0.620023 | 2:+14865721 | None:intergenic |
AAGCTGGGTTTCCGGTACAC+CGG | 0.621789 | 2:-14865322 | MsaT007197.1:CDS |
GGTTAAGAGGAAGGCAAATG+GGG | 0.628905 | 2:-14865555 | MsaT007197.1:CDS |
TCGGCATAACGAGGCCCAAG+AGG | 0.630511 | 2:+14864617 | None:intergenic |
TGGTTTGGTATCAATAGTTG+TGG | 0.630835 | 2:-14864951 | MsaT007197.1:CDS |
TCCATCGGTCTCGACCCCAT+CGG | 0.633244 | 2:+14863324 | None:intergenic |
GTGGAATAAGGCATTGAATG+TGG | 0.639736 | 2:+14864586 | None:intergenic |
TGGAGTTTGCAGCATGAATG+TGG | 0.649735 | 2:-14863305 | MsaT007197.1:CDS |
TAAAATGTATCTGTCTAAGG+AGG | 0.650992 | 2:-14865489 | MsaT007197.1:CDS |
TTGTTGACGGGGTTTCACAG+TGG | 0.656963 | 2:-14865466 | MsaT007197.1:CDS |
ATTTGCCTTCCTCTTAACCG+GGG | 0.662005 | 2:+14865559 | None:intergenic |
TGGGCACCATCCTATGTGAG+AGG | 0.663195 | 2:-14864458 | MsaT007197.1:CDS |
TTGTTTAGAATATTCCACAC+CGG | 0.665129 | 2:+14864662 | None:intergenic |
CCGAGAACGATCTTTAAACG+TGG | 0.667057 | 2:-14863524 | MsaT007197.1:CDS |
GGTGTGGAATATTCTAAACA+AGG | 0.670977 | 2:-14864660 | MsaT007197.1:CDS |
AATGCCCATGAAAATGATTG+TGG | 0.675484 | 2:+14864885 | None:intergenic |
TGCTTATCGGAAGATTCAGG+AGG | 0.685781 | 2:-14865375 | MsaT007197.1:CDS |
AGAACGATCTTTAAACGTGG+AGG | 0.689325 | 2:-14863521 | MsaT007197.1:CDS |
CTTGAAAAGGGAATTCAAGG+TGG | 0.689739 | 2:-14865281 | MsaT007197.1:CDS |
AAGTGTTACATTACAAACGA+GGG | 0.690032 | 2:-14865821 | MsaT007197.1:CDS |
ATTCCACATCGAGAAAACAG+AGG | 0.714783 | 2:-14864570 | MsaT007197.1:CDS |
GAAGTGTTACATTACAAACG+AGG | 0.716498 | 2:-14865822 | MsaT007197.1:CDS |
CTAAACACGTCATTCCGGTG+TGG | 0.723440 | 2:-14864676 | MsaT007197.1:CDS |
TAACACTTCCAATCTCCACA+GGG | 0.732365 | 2:+14865836 | None:intergenic |
CGGAAACAACAATGTCCCTG+TGG | 0.743510 | 2:-14865851 | MsaT007197.1:CDS |
AGATATGTCTAAGACCGATG+GGG | 0.747503 | 2:-14863338 | MsaT007197.1:CDS |
ATAGAGATAGGAAATCAGTG+AGG | 0.812534 | 2:-14865526 | MsaT007197.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 14863285 | 14865897 | 14863285 | ID=MsaG007197 |
Chr2 | mRNA | 14863285 | 14865897 | 14863285 | ID=MsaT007197.1;Parent=MsaG007197 |
Chr2 | exon | 14863285 | 14863917 | 14863285 | ID=MsaT007197.1.exon3;Parent=MsaT007197.1 |
Chr2 | CDS | 14863285 | 14863917 | 14863285 | ID=cds.MsaT007197.1;Parent=MsaT007197.1 |
Chr2 | exon | 14864352 | 14864795 | 14864352 | ID=MsaT007197.1.exon2;Parent=MsaT007197.1 |
Chr2 | CDS | 14864352 | 14864795 | 14864352 | ID=cds.MsaT007197.1;Parent=MsaT007197.1 |
Chr2 | exon | 14864881 | 14865897 | 14864881 | ID=MsaT007197.1.exon1;Parent=MsaT007197.1 |
Chr2 | CDS | 14864881 | 14865897 | 14864881 | ID=cds.MsaT007197.1;Parent=MsaT007197.1 |
Gene Sequence |
Protein sequence |