AlfalfaGEDB | MsaG007233

M. sativa ssp. caerulea / MsaG007233

KEGG: K08065 K14799
GO: GO:0000976 GO:0000981 GO:0001067 GO:0001654 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0007423 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010720 GO:0010941 GO:0016070 GO:0016602 GO:0018130 GO:0019216 GO:0019218 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0022008 GO:0022603 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043408 GO:0043410 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0044877 GO:0045540 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0045676 GO:0045678 GO:0045893 GO:0045935 GO:0045937 GO:0046483 GO:0046532 GO:0046534 GO:0046890 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048699 GO:0048731 GO:0048749 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050810 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0060548 GO:0062012 GO:0065007 GO:0070013 GO:0070491 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090181 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0106118 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1990823 GO:1990830 GO:1990837 GO:2000026 GO:2000027 GO:2000112 GO:2001141
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007233	XP_013462945.1	99.398	166	1	0	1	166	1	166	6.20e-118	340

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007233	sp\|O23310\|NFYB3_ARATH	83.471	121	16	1	1	117	1	121	6.62e-70	211

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007233	tr\|I3TAX1\|I3TAX1_MEDTR	99.398	166	1	0	1	166	1	166	2.96e-118	340

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TFs/TRs:

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Gene ID	Type	Classification
MsaG007233	TF	NF-YB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007233	MtrunA17_Chr2g0290491	99.398	166	1	0	1	166	1	166	5.70e-122	340
MsaG007233	MtrunA17_Chr5g0446491	66.061	165	43	4	1	155	1	162	1.01e-68	206
MsaG007233	MtrunA17_Chr3g0102351	73.239	142	23	3	1	132	1	137	6.66e-67	202
MsaG007233	MtrunA17_Chr8g0382931	76.190	126	23	2	16	134	27	152	1.27e-63	194
MsaG007233	MtrunA17_Chr4g0076321	73.077	130	30	2	1	125	1	130	5.21e-63	190
MsaG007233	MtrunA17_Chr7g0263601	73.950	119	22	1	1	110	1	119	1.50e-61	187
MsaG007233	MtrunA17_Chr1g0185911	64.539	141	40	2	3	133	9	149	1.92e-59	182
MsaG007233	MtrunA17_Chr8g0384451	77.778	108	22	1	16	121	39	146	3.71e-58	180
MsaG007233	MtrunA17_Chr4g0076381	52.564	156	54	4	2	144	48	196	8.11e-53	167
MsaG007233	MtrunA17_Chr1g0195851	75.000	96	24	0	16	111	35	130	8.28e-52	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007233	AT4G14540.1	83.471	121	16	1	1	117	1	121	6.73e-71	211
MsaG007233	AT5G47640.1	83.929	112	16	2	16	127	26	135	6.21e-64	194
MsaG007233	AT2G38880.3	68.939	132	36	2	10	139	12	140	1.58e-60	184
MsaG007233	AT2G38880.2	70.312	128	33	2	10	135	12	136	2.17e-60	184
MsaG007233	AT2G38880.1	70.312	128	33	2	10	135	12	136	2.17e-60	184
MsaG007233	AT2G38880.5	70.312	128	33	2	10	135	12	136	2.17e-60	184
MsaG007233	AT2G37060.2	77.064	109	21	1	6	110	15	123	2.68e-59	182
MsaG007233	AT2G37060.3	77.064	109	21	1	6	110	15	123	2.68e-59	182
MsaG007233	AT2G37060.1	77.064	109	21	1	6	110	15	123	2.68e-59	182
MsaG007233	AT2G38880.7	69.531	128	32	2	10	135	12	134	1.04e-58	179

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Find 39 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATATGTATGGATCTGGGAG+TGG	0.582558	2:-15338667	MsaT007233.1:CDS
AATGTTGGTGAGGGTAGTGG+TGG	0.579830	2:-15338745	MsaT007233.1:CDS
AGAAGAGTGCTATGATTGGT+AGG	0.483869	2:-15338786	MsaT007233.1:CDS
AGAGATGGAAATGTTGGTGA+GGG	0.549342	2:-15338754	MsaT007233.1:CDS
AGTAAGTATAGAGAGATGGA+AGG	0.568189	2:-15338811	MsaT007233.1:CDS
AGTGGTGGAGTTTATGGTCA+TGG	0.452362	2:-15338730	MsaT007233.1:CDS
ATAAGTGTCAGAAAGAGAAG+AGG	0.567471	2:-15338918	MsaT007233.1:CDS
ATCATCATCATCATAGAAGA+TGG	0.485382	2:+15338697	None:intergenic
ATCCTACTCACGTTTGCTAT+TGG	0.294063	2:+15339048	None:intergenic
ATCTTCTATGATGATGATGA+TGG	0.489435	2:-15338695	MsaT007233.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	15338636	15339136	15338636	ID=MsaG007233
Chr2	mRNA	15338636	15339136	15338636	ID=MsaT007233.1;Parent=MsaG007233
Chr2	exon	15338636	15339136	15338636	ID=MsaT007233.1.exon1;Parent=MsaT007233.1
Chr2	CDS	15338636	15339136	15338636	ID=cds.MsaT007233.1;Parent=MsaT007233.1

Gene Sequence

>MsaT007233.1

ATGGTTGAATCAGACAATGAGTCAGGAGGTGGTCAAACAGGTTGCAGAGAGCAAGATAGGTTTCTTCCAATAGCAAACGTGAGTAGGATCATGAAAAAGGCTTTACCAGCAAACGCAAAGATCTCAAAAGAAGCAAAAGAAACAGTACAAGAGTGTGTATCAGAGTTTATCAGTTTCATAACAGGAGAAGCTTCTGATAAGTGTCAGAAAGAGAAGAGGAAAACAATCAACGGTGATGATCTTCTTTGGGCTATGACAACTCTTGGATTTGAAGATTATGTTGAGCCACTCAAGATTTATTTGAGTAAGTATAGAGAGATGGAAGGAGAGAAGAGTGCTATGATTGGTAGGAGTGATCAGAGAGATGGAAATGTTGGTGAGGGTAGTGGTGGAGTTTATGGTCATGGAGTTGGAGTTCCATCTTCTATGATGATGATGATGGGACATAATATGTATGGATCTGGGAGTGGATCGCCATCTTCTGGAAGGAGTACTAGATAG

Protein sequence

>MsaT007233.1

MVESDNESGGGQTGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLSKYREMEGEKSAMIGRSDQRDGNVGEGSGGVYGHGVGVPSSMMMMMGHNMYGSGSGSPSSGRSTR*