AlfalfaGEDB | MsaG007260

M. sativa ssp. caerulea / MsaG007260

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007260	XP_003594367.1	99.363	314	1	1	1	314	1	313	0.0	644

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007260	sp\|Q94A57\|PHL2_ARATH	44.922	256	128	3	8	256	9	258	1.11e-63	206

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007260	tr\|A2Q5E6\|A2Q5E6_MEDTR	99.363	314	1	1	1	314	1	313	0.0	644

TFs/TRs:

Gene ID	Type	Classification
MsaG007260	TF	GARP-G2-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG007260	MsaG024329	0.808370	5.452700e-50	8.952736e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007260	MtrunA17_Chr2g0290991	99.363	314	1	1	1	314	1	313	0.0	644
MsaG007260	MtrunA17_Chr1g0197171	70.062	324	58	7	1	314	1	295	8.27e-151	424
MsaG007260	MtrunA17_Chr8g0356501	52.514	179	68	5	28	204	25	188	2.22e-47	162
MsaG007260	MtrunA17_Chr2g0310011	57.432	148	52	3	28	174	23	160	6.20e-45	156
MsaG007260	MtrunA17_Chr5g0409731	51.829	164	69	5	22	180	8	166	3.98e-43	150
MsaG007260	MtrunA17_Chr5g0417521	43.396	212	101	6	33	236	8	208	3.32e-42	149
MsaG007260	MtrunA17_Chr2g0321461	40.408	245	121	8	26	260	31	260	3.09e-41	147
MsaG007260	MtrunA17_Chr6g0461641	44.048	168	89	2	33	195	35	202	1.15e-39	143
MsaG007260	MtrunA17_Chr4g0042451	43.455	191	94	5	33	213	10	196	1.16e-39	142
MsaG007260	MtrunA17_Chr7g0254981	47.260	146	52	2	40	177	50	178	6.92e-38	135
MsaG007260	MtrunA17_Chr2g0291021	46.809	141	59	2	40	177	49	176	3.26e-34	127
MsaG007260	MtrunA17_Chr7g0261911	41.615	161	75	3	36	192	258	403	1.18e-32	126
MsaG007260	MtrunA17_Chr1g0175091	41.250	160	79	4	19	177	236	381	1.05e-30	119
MsaG007260	MtrunA17_Chr1g0190301	41.781	146	73	3	32	177	167	300	1.59e-28	113
MsaG007260	MtrunA17_Chr7g0274471	40.816	147	75	2	40	186	218	352	2.06e-28	114
MsaG007260	MtrunA17_Chr7g0258551	37.888	161	86	3	40	199	212	359	5.56e-28	111
MsaG007260	MtrunA17_Chr7g0242521	33.333	180	94	4	36	202	9	175	1.26e-21	91.7
MsaG007260	MtrunA17_Chr1g0175071	34.965	143	80	3	35	177	172	301	2.41e-18	84.0
MsaG007260	MtrunA17_Chr1g0175081	56.364	55	24	0	42	96	24	78	5.08e-17	75.5
MsaG007260	MtrunA17_Chr7g0243081	60.714	56	22	0	41	96	72	127	7.00e-17	80.1
MsaG007260	MtrunA17_Chr6g0479431	58.333	60	25	0	41	100	203	262	5.16e-16	77.8
MsaG007260	MtrunA17_Chr1g0162931	52.055	73	29	1	41	113	19	85	7.90e-16	76.3
MsaG007260	MtrunA17_Chr2g0288601	66.000	50	17	0	41	90	72	121	1.09e-15	72.4
MsaG007260	MtrunA17_Chr1g0154261	58.333	60	25	0	41	100	127	186	1.38e-15	75.9
MsaG007260	MtrunA17_Chr8g0379121	58.929	56	23	0	41	96	112	167	1.65e-15	76.6
MsaG007260	MtrunA17_Chr3g0109981	54.286	70	31	1	41	109	275	344	1.68e-15	76.6
MsaG007260	MtrunA17_Chr2g0320231	60.714	56	22	0	41	96	98	153	1.99e-15	76.3
MsaG007260	MtrunA17_Chr1g0210911	56.452	62	22	1	41	97	23	84	4.92e-15	74.7
MsaG007260	MtrunA17_Chr3g0095611	59.259	54	22	0	40	93	19	72	5.70e-15	72.8
MsaG007260	MtrunA17_Chr8g0366281	60.714	56	22	0	41	96	174	229	6.93e-15	74.3
MsaG007260	MtrunA17_Chr5g0410741	50.000	74	34	1	41	114	220	290	7.46e-15	74.7
MsaG007260	MtrunA17_Chr7g0258531	31.875	160	89	3	23	180	203	344	1.46e-13	70.5
MsaG007260	MtrunA17_Chr1g0198601	60.000	55	22	0	40	94	211	265	4.50e-13	69.3
MsaG007260	MtrunA17_Chr5g0402631	60.000	55	22	0	40	94	214	268	1.36e-12	67.4
MsaG007260	MtrunA17_Chr4g0031961	60.000	55	21	1	40	94	131	184	1.36e-12	67.4
MsaG007260	MtrunA17_Chr7g0275401	55.556	54	23	1	40	93	192	244	2.12e-12	66.6
MsaG007260	MtrunA17_Chr1g0149841	57.627	59	24	1	36	94	187	244	4.94e-12	66.2
MsaG007260	MtrunA17_Chr7g0255711	60.000	55	21	1	40	94	91	144	5.18e-12	65.5
MsaG007260	MtrunA17_Chr1g0161431	54.237	59	26	1	36	94	196	253	6.93e-12	66.2
MsaG007260	MtrunA17_Chr2g0283951	56.000	50	22	0	41	90	90	139	7.60e-12	65.5
MsaG007260	MtrunA17_Chr5g0422621	56.364	55	24	0	40	94	198	252	1.51e-11	64.7
MsaG007260	MtrunA17_Chr4g0062921	58.182	55	23	0	40	94	235	289	1.61e-11	64.7
MsaG007260	MtrunA17_Chr4g0067981	58.182	55	22	1	40	94	215	268	1.88e-11	64.7
MsaG007260	MtrunA17_Chr3g0137101	49.275	69	30	2	26	94	188	251	3.98e-11	63.9
MsaG007260	MtrunA17_Chr4g0009901	46.970	66	34	1	36	101	164	228	4.98e-11	62.4
MsaG007260	MtrunA17_Chr2g0294911	56.364	55	23	1	40	94	211	264	6.04e-11	63.2
MsaG007260	MtrunA17_Chr4g0045361	56.364	55	24	0	40	94	274	328	6.11e-11	62.8
MsaG007260	MtrunA17_Chr2g0304841	47.458	59	30	1	36	94	209	266	8.67e-11	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007260	AT3G24120.1	44.922	256	128	3	8	256	9	258	1.13e-64	206
MsaG007260	AT3G24120.2	44.402	259	128	4	8	256	9	261	1.80e-62	200
MsaG007260	AT4G13640.1	45.992	237	105	5	30	256	27	250	2.29e-61	197
MsaG007260	AT4G13640.2	45.417	240	105	6	30	256	27	253	3.57e-59	192
MsaG007260	AT1G79430.2	53.459	159	64	2	28	185	22	171	2.59e-47	163
MsaG007260	AT3G04030.3	40.079	252	136	8	26	271	31	273	1.16e-43	154
MsaG007260	AT5G18240.1	38.735	253	120	7	19	258	28	258	2.92e-42	150
MsaG007260	AT5G18240.4	38.735	253	120	7	19	258	28	258	2.92e-42	150
MsaG007260	AT1G69580.1	45.833	168	85	2	24	185	18	185	7.14e-42	148
MsaG007260	AT1G69580.2	44.970	169	86	2	24	185	18	186	7.34e-41	145
MsaG007260	AT3G04030.2	39.286	252	137	9	26	271	31	272	8.29e-41	146
MsaG007260	AT5G18240.5	38.735	253	118	8	19	258	28	256	3.11e-40	145
MsaG007260	AT3G12730.1	51.282	156	61	4	33	182	16	162	3.56e-40	140
MsaG007260	AT3G04030.1	38.889	252	133	9	26	271	31	267	3.01e-38	139
MsaG007260	AT5G45580.2	45.912	159	79	3	33	184	16	174	2.09e-37	135
MsaG007260	AT5G45580.1	46.203	158	78	3	34	184	1	158	2.32e-37	134
MsaG007260	AT5G18240.2	37.549	253	117	8	19	258	28	252	6.50e-37	136
MsaG007260	AT5G18240.3	37.549	253	117	8	19	258	28	252	6.50e-37	136
MsaG007260	AT2G01060.1	47.826	138	61	1	40	177	15	141	1.70e-34	127
MsaG007260	AT5G06800.2	44.928	138	68	2	40	177	192	321	4.40e-31	120
MsaG007260	AT5G06800.1	43.357	143	58	2	40	177	192	316	4.77e-30	117
MsaG007260	AT3G13040.3	41.317	167	77	3	37	199	238	387	6.14e-29	115
MsaG007260	AT3G13040.1	41.317	167	77	3	37	199	238	387	6.14e-29	115
MsaG007260	AT3G13040.2	41.317	167	77	3	37	199	238	387	6.14e-29	115
MsaG007260	AT5G29000.1	37.079	178	89	3	12	186	168	325	9.46e-29	114
MsaG007260	AT5G29000.3	37.079	178	89	3	12	186	168	325	9.46e-29	114
MsaG007260	AT5G29000.2	37.079	178	89	3	12	186	211	368	1.87e-28	114
MsaG007260	AT3G04450.4	40.994	161	79	5	26	183	186	333	9.49e-28	111
MsaG007260	AT3G04450.2	40.994	161	79	5	26	183	186	333	9.49e-28	111
MsaG007260	AT3G04450.1	40.994	161	79	5	26	183	226	373	1.18e-27	112
MsaG007260	AT4G28610.1	42.361	144	60	2	40	177	225	351	3.17e-27	110
MsaG007260	AT2G20400.2	43.382	136	66	2	42	177	233	357	3.33e-27	110
MsaG007260	AT2G20400.1	42.647	136	66	2	42	177	233	356	1.01e-26	108
MsaG007260	AT2G06020.1	55.128	78	35	0	19	96	65	142	2.38e-24	100
MsaG007260	AT5G06800.3	66.667	57	19	0	40	96	192	248	6.51e-21	90.9
MsaG007260	AT1G79430.1	45.690	116	51	4	72	185	1	106	5.16e-20	88.6
MsaG007260	AT3G04030.5	34.466	206	120	8	72	271	1	197	8.81e-20	88.6
MsaG007260	AT3G04450.3	52.113	71	32	1	26	96	226	294	1.87e-18	84.7
MsaG007260	AT5G29000.4	47.059	85	37	1	12	96	211	287	3.61e-18	84.0
MsaG007260	AT4G04605.1	62.264	53	20	0	41	93	15	67	3.07e-17	79.3
MsaG007260	AT2G42660.1	44.554	101	51	2	41	140	51	147	8.50e-17	79.0
MsaG007260	AT2G02060.2	61.017	59	23	0	39	97	28	86	1.77e-16	78.2
MsaG007260	AT2G02060.1	61.017	59	23	0	39	97	28	86	1.77e-16	78.2
MsaG007260	AT1G14600.1	63.636	55	20	0	39	93	22	76	3.22e-16	77.4
MsaG007260	AT2G38300.1	62.500	56	21	0	41	96	55	110	4.27e-16	78.2
MsaG007260	AT5G42630.2	57.576	66	27	1	41	105	106	171	1.31e-15	75.1
MsaG007260	AT5G16560.1	58.333	60	25	0	41	100	220	279	1.42e-15	77.0
MsaG007260	AT2G40260.1	60.714	56	22	0	41	96	83	138	2.32e-15	76.6
MsaG007260	AT5G42630.1	57.576	66	27	1	41	105	106	171	2.39e-15	75.1
MsaG007260	AT1G32240.2	58.333	60	25	0	41	100	214	273	2.91e-15	75.9
MsaG007260	AT1G32240.1	58.333	60	25	0	41	100	214	273	4.02e-15	75.9
MsaG007260	AT3G04030.4	33.010	206	117	9	72	271	1	191	1.12e-14	73.9
MsaG007260	AT4G17695.1	50.000	74	36	1	41	113	165	238	3.73e-14	72.4
MsaG007260	AT3G12730.2	40.171	117	55	4	72	182	1	108	3.85e-14	70.1
MsaG007260	AT2G01060.2	39.806	103	51	1	75	177	1	92	7.00e-14	70.5
MsaG007260	AT5G18240.6	31.000	200	101	7	72	258	1	176	1.06e-13	70.9
MsaG007260	AT4G04580.1	50.000	64	30	1	41	102	15	78	2.74e-13	67.4
MsaG007260	AT4G37180.1	60.377	53	21	0	42	94	212	264	3.74e-13	69.7
MsaG007260	AT4G37180.2	60.377	53	21	0	42	94	219	271	4.25e-13	69.7
MsaG007260	AT5G59570.2	60.000	55	21	1	40	94	141	194	5.93e-13	68.6
MsaG007260	AT5G59570.1	60.000	55	21	1	40	94	141	194	5.93e-13	68.6
MsaG007260	AT3G46640.2	60.000	55	21	1	40	94	144	197	8.32e-13	68.6
MsaG007260	AT3G46640.1	60.000	55	21	1	40	94	144	197	8.32e-13	68.6
MsaG007260	AT3G46640.3	60.000	55	21	1	40	94	144	197	1.14e-12	68.2
MsaG007260	AT3G25790.1	62.000	50	19	0	45	94	201	250	1.33e-12	68.2
MsaG007260	AT5G58080.1	51.389	72	31	2	40	111	194	261	2.20e-12	68.2
MsaG007260	AT2G40970.1	50.649	77	31	3	18	94	89	158	2.55e-12	66.2
MsaG007260	AT3G10760.1	52.564	78	29	4	18	94	88	158	3.02e-12	67.0
MsaG007260	AT1G49560.1	60.000	55	22	0	40	94	192	246	3.67e-12	66.6
MsaG007260	AT5G05090.1	60.000	55	21	1	40	94	81	134	4.39e-12	65.9
MsaG007260	AT4G04555.1	44.286	70	39	0	28	97	2	71	8.65e-12	61.6
MsaG007260	AT3G16857.3	56.364	55	23	1	40	94	167	220	2.97e-11	64.7
MsaG007260	AT3G16857.2	56.364	55	23	1	40	94	237	290	3.62e-11	64.3
MsaG007260	AT3G16857.1	56.364	55	23	1	40	94	237	290	3.64e-11	64.3
MsaG007260	AT1G13300.1	56.364	55	24	0	40	94	181	235	3.90e-11	63.5
MsaG007260	AT2G03500.1	58.182	55	23	0	40	94	233	287	6.38e-11	63.2

Find 90 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGGTTGAACAATCGGCTCTT+TGG	0.155548	2:-15729008	None:intergenic
ATGCTAGCTGATCAATTTAT+TGG	0.193863	2:+15728826	MsaT007260.1:CDS
GGTTGAACAATCGGCTCTTT+GGG	0.282394	2:-15729007	None:intergenic
TCTGGAGGATTGACTTTAGA+AGG	0.285141	2:+15729057	MsaT007260.1:CDS
CTATGACAGCGCCTTTGATT+TGG	0.297609	2:+15729121	MsaT007260.1:CDS
AAAACTCAAGCCATCAATTT+AGG	0.298571	2:+15729159	MsaT007260.1:CDS
CTTTGGGGTGGGATGGTTTG+AGG	0.308296	2:-15728991	None:intergenic
GTCCAACGAAGACGAGGTTT+TGG	0.338998	2:-15724944	None:intergenic
TTAACATCGCATGAGAGTTC+TGG	0.346354	2:+15729039	MsaT007260.1:CDS
TCATTTAAAGAGTCATCTTC+AGG	0.351540	2:+15727502	MsaT007260.1:CDS
ATTACCTTGGCCTAAATTGA+TGG	0.354339	2:-15729169	None:intergenic
AAGCAATCCGGAAAAGATAT+AGG	0.358737	2:+15727620	MsaT007260.1:CDS
ATGCGATGTTAAACAACTTT+CGG	0.367108	2:-15729028	None:intergenic
AGCAATCCGGAAAAGATATA+GGG	0.376915	2:+15727621	MsaT007260.1:CDS
TTGCCATCCACTGAGGCGGC+CGG	0.380341	2:+15728943	MsaT007260.1:CDS
TGCCATCCACTGAGGCGGCC+GGG	0.395437	2:+15728944	MsaT007260.1:CDS
GTTTGAGGAACTTCTTCTTC+CGG	0.400060	2:-15728976	None:intergenic
ACAACTTTCGGTTGAACAAT+CGG	0.406493	2:-15729016	None:intergenic
GGTCCCTTGGTTGACCATCT+TGG	0.416116	2:+15728910	MsaT007260.1:CDS
ATTGTCCGCATGATTGCTTT+TGG	0.420397	2:-15727455	None:intergenic
TCATGAGGGTGTATCAATCT+AGG	0.428130	2:-15724836	None:intergenic
GGCGGCCGGGGTGAATGTTC+CGG	0.429442	2:+15728957	MsaT007260.1:CDS
GCCATCCACTGAGGCGGCCG+GGG	0.433875	2:+15728945	MsaT007260.1:CDS
TGGTGGTGTCTCTAATCATA+AGG	0.440801	2:+15724892	MsaT007260.1:CDS
GTTGATGCTGTTACTCAGCT+TGG	0.442902	2:+15724989	MsaT007260.1:CDS
GAACAATCGGCTCTTTGGGG+TGG	0.443806	2:-15729003	None:intergenic
TACAGACTTGGTAAGCAATC+CGG	0.450055	2:+15727608	MsaT007260.1:CDS
GGCCAAGGTAATCATCCTCT+TGG	0.453713	2:+15729180	MsaT007260.1:CDS
CCTCATGATGGAATTGTTGT+TGG	0.462651	2:+15724851	MsaT007260.1:CDS
GTATCGGAAGTAGGCAACTT+TGG	0.463672	2:-15728043	None:intergenic
AAATTTATGGTAGGGATGAC+AGG	0.466711	2:+15727980	MsaT007260.1:intron
ACTTTAGAAGGATCTCAAGT+TGG	0.479568	2:+15729069	MsaT007260.1:CDS
AACAATCGGCTCTTTGGGGT+GGG	0.480882	2:-15729002	None:intergenic
GGAGGCGTTGAGAGCACAGA+TGG	0.483691	2:+15728192	MsaT007260.1:CDS
GAAGTAGGCAACTTTGGAGA+TGG	0.488490	2:-15728037	None:intergenic
ATAGGGGAGGGATGCAAAGA+TGG	0.491483	2:+15727638	MsaT007260.1:CDS
GATCTCAAGTTGGAGGGAAA+AGG	0.496998	2:+15729079	MsaT007260.1:CDS
ATCGGCTCTTTGGGGTGGGA+TGG	0.499806	2:-15728998	None:intergenic
GGAGGGAAAAGGAGAATGCT+AGG	0.500846	2:+15729090	MsaT007260.1:CDS
TTAGAAGGATCTCAAGTTGG+AGG	0.500893	2:+15729072	MsaT007260.1:CDS
ATCATCCTCTTGGAATATCT+AGG	0.506192	2:+15729190	MsaT007260.1:CDS
ACCCCGGCCGCCTCAGTGGA+TGG	0.507580	2:-15728946	None:intergenic
TGTATCTTCGCTCAGCATCC+TGG	0.508102	2:-15728777	None:intergenic
TACTCGTTTGTATCGGAAGT+AGG	0.510668	2:-15728052	None:intergenic
AAGTAGGCAACTTTGGAGAT+GGG	0.513227	2:-15728036	None:intergenic
GGATGCTGAGCGAAGATACA+TGG	0.518607	2:+15728780	MsaT007260.1:CDS
TGGTCAACCAAGGGACCTCT+TGG	0.519497	2:-15728904	None:intergenic
GCATAGGGGTTATGAAATCA+AGG	0.523784	2:+15728171	MsaT007260.1:intron
ATCCAAAACCTCGTCTTCGT+TGG	0.525904	2:+15724942	MsaT007260.1:CDS
GCCAGGGCTTTCTAAAAGAT+AGG	0.528282	2:-15728005	None:intergenic
TAAAGCACCAAGAGGTCCCT+TGG	0.531348	2:+15728897	MsaT007260.1:CDS
GAAGCACTTGCAGATTCGCC+AGG	0.541877	2:+15728759	MsaT007260.1:CDS
GAAAAGGAGAATGCTAGGTA+TGG	0.546508	2:+15729095	MsaT007260.1:CDS
CCTCTTGGAATATCTAGGTA+TGG	0.546800	2:+15729195	MsaT007260.1:CDS
TTCCAAGAGGATGATTACCT+TGG	0.548219	2:-15729182	None:intergenic
GGTGGTGTCTCTAATCATAA+GGG	0.554266	2:+15724893	MsaT007260.1:CDS
GATGCTGTTACTCAGCTTGG+AGG	0.554946	2:+15724992	MsaT007260.1:CDS
CAAGCCATCAATTTAGGCCA+AGG	0.566864	2:+15729165	MsaT007260.1:CDS
TTTGCTTCACTCCAAATCAA+AGG	0.568891	2:-15729132	None:intergenic
ATTTCCTTACTCGTTTGTAT+CGG	0.573101	2:-15728059	None:intergenic
TTCTTTGCCATCCACTGAGG+CGG	0.574794	2:+15728939	MsaT007260.1:CDS
TAGAAGGATCTCAAGTTGGA+GGG	0.577191	2:+15729073	MsaT007260.1:CDS
GTTGAACAATCGGCTCTTTG+GGG	0.582575	2:-15729006	None:intergenic
AGATTGATACACCCTCATGA+TGG	0.584781	2:+15724839	MsaT007260.1:CDS
ATTCACCCCGGCCGCCTCAG+TGG	0.594246	2:-15728950	None:intergenic
ACATCGCATGAGAGTTCTGG+AGG	0.595984	2:+15729042	MsaT007260.1:CDS
TCAGCAGTCAAAACAAGACA+AGG	0.615338	2:-15724920	None:intergenic
CAAGATGATTTGCAAGGTGG+TGG	0.615984	2:+15724875	MsaT007260.1:CDS
TCCGGAAAAGATATAGGGGA+GGG	0.625666	2:+15727626	MsaT007260.1:CDS
CCAACAACAATTCCATCATG+AGG	0.626678	2:-15724851	None:intergenic
CATGCGGACAATGAACGTCA+AGG	0.632402	2:+15727466	MsaT007260.1:CDS
CAACAACAATTCCATCATGA+GGG	0.639113	2:-15724850	None:intergenic
TAAACTACATTTGCAAGTGG+AGG	0.639361	2:+15728225	MsaT007260.1:CDS
ATGCGGACAATGAACGTCAA+GGG	0.640658	2:+15727467	MsaT007260.1:CDS
TCTTGAGTCCAACGAAGACG+AGG	0.641269	2:-15724950	None:intergenic
GCAATCCGGAAAAGATATAG+GGG	0.641428	2:+15727622	MsaT007260.1:CDS
ATCCGGAAAAGATATAGGGG+AGG	0.642409	2:+15727625	MsaT007260.1:CDS
GAGTAAACTACATTTGCAAG+TGG	0.654936	2:+15728222	MsaT007260.1:CDS
GCATTGCAGAAATACAGACT+TGG	0.656904	2:+15727596	MsaT007260.1:intron
AAAACCAAGATGGTCAACCA+AGG	0.658876	2:-15728914	None:intergenic
AAACCAAGATGGTCAACCAA+GGG	0.665553	2:-15728913	None:intergenic
GTTGGACAAGATGATTTGCA+AGG	0.669830	2:+15724869	MsaT007260.1:CDS
TTCTTCCGGAACATTCACCC+CGG	0.669867	2:-15728962	None:intergenic
ATTGAAAATAAAGCACCAAG+AGG	0.674501	2:+15728889	MsaT007260.1:CDS
TTATTCTTTGCCATCCACTG+AGG	0.681928	2:+15728936	MsaT007260.1:CDS
CCATACCTAGATATTCCAAG+AGG	0.688542	2:-15729195	None:intergenic
CCACACCAAAAGCAATCATG+CGG	0.689020	2:+15727450	MsaT007260.1:CDS
CAGCAGTCAAAACAAGACAA+GGG	0.714975	2:-15724919	None:intergenic
GGACAAGATGATTTGCAAGG+TGG	0.723490	2:+15724872	MsaT007260.1:CDS
TAGGGGTTATGAAATCAAGG+AGG	0.782309	2:+15728174	MsaT007260.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	15724830	15729224	15724830	ID=MsaG007260
Chr2	mRNA	15724830	15729224	15724830	ID=MsaT007260.1;Parent=MsaG007260
Chr2	exon	15724830	15725022	15724830	ID=MsaT007260.1.exon1;Parent=MsaT007260.1
Chr2	CDS	15724830	15725022	15724830	ID=cds.MsaT007260.1;Parent=MsaT007260.1
Chr2	exon	15727447	15727523	15727447	ID=MsaT007260.1.exon2;Parent=MsaT007260.1
Chr2	CDS	15727447	15727523	15727447	ID=cds.MsaT007260.1;Parent=MsaT007260.1
Chr2	exon	15727605	15727659	15727605	ID=MsaT007260.1.exon3;Parent=MsaT007260.1
Chr2	CDS	15727605	15727659	15727605	ID=cds.MsaT007260.1;Parent=MsaT007260.1
Chr2	exon	15727993	15728071	15727993	ID=MsaT007260.1.exon4;Parent=MsaT007260.1
Chr2	CDS	15727993	15728071	15727993	ID=cds.MsaT007260.1;Parent=MsaT007260.1
Chr2	exon	15728177	15728246	15728177	ID=MsaT007260.1.exon5;Parent=MsaT007260.1
Chr2	CDS	15728177	15728246	15728177	ID=cds.MsaT007260.1;Parent=MsaT007260.1
Chr2	exon	15728754	15729224	15728754	ID=MsaT007260.1.exon6;Parent=MsaT007260.1
Chr2	CDS	15728754	15729224	15728754	ID=cds.MsaT007260.1;Parent=MsaT007260.1

Gene Sequence

>MsaT007260.1

ATGTTTCCTAGATTGATACACCCTCATGATGGAATTGTTGTTGGACAAGATGATTTGCAAGGTGGTGGTGTCTCTAATCATAAGGGTGACCCTTGTCTTGTTTTGACTGCTGATCCAAAACCTCGTCTTCGTTGGACTCAAGATTTGCATGAACGTTTTGTTGATGCTGTTACTCAGCTTGGAGGTCCCAGTAAAGCCACACCAAAAGCAATCATGCGGACAATGAACGTCAAGGGTTTGACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGACTTGGTAAGCAATCCGGAAAAGATATAGGGGAGGGATGCAAAGATGGGATGACAGGATCCTATCTTTTAGAAAGCCCTGGCACTGAAAACCCATCTCCAAAGTTGCCTACTTCCGATACAAACGAGGGTTATGAAATCAAGGAGGCGTTGAGAGCACAGATGGAAGTGCAGAGTAAACTACATTTGCAAGTGGAGGCAGAGAAGCACTTGCAGATTCGCCAGGATGCTGAGCGAAGATACATGGCTATGCTTGAAAGAGCTTGTAAGATGCTAGCTGATCAATTTATTGGTGCTACTGTTATAGACACAGACAGCCAAAAATTCCAAGGAATTGAAAATAAAGCACCAAGAGGTCCCTTGGTTGACCATCTTGGTTTTTATTCTTTGCCATCCACTGAGGCGGCCGGGGTGAATGTTCCGGAAGAAGAAGTTCCTCAAACCATCCCACCCCAAAGAGCCGATTGTTCAACCGAAAGTTGTTTAACATCGCATGAGAGTTCTGGAGGATTGACTTTAGAAGGATCTCAAGTTGGAGGGAAAAGGAGAATGCTAGGTATGGACTCTATGACAGCGCCTTTGATTTGGAGTGAAGCAAAGATGAAAACTCAAGCCATCAATTTAGGCCAAGGTAATCATCCTCTTGGAATATCTAGGTATGGCATGTAA

Protein sequence

>MsaT007260.1

MFPRLIHPHDGIVVGQDDLQGGGVSNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDIGEGCKDGMTGSYLLESPGTENPSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIENKAPRGPLVDHLGFYSLPSTEAAGVNVPEEEVPQTIPPQRADCSTESCLTSHESSGGLTLEGSQVGGKRRMLGMDSMTAPLIWSEAKMKTQAINLGQGNHPLGISRYGM*