AlfalfaGEDB | MsaG007262

M. sativa ssp. caerulea / MsaG007262

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007262	XP_003594371.1	97.273	330	9	0	1	330	1	330	0.0	663

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007262	sp\|Q9SJW0\|PHL7_ARATH	66.779	298	69	9	43	330	9	286	2.99e-118	345

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007262	tr\|G7ISP0\|G7ISP0_MEDTR	97.273	330	9	0	1	330	1	330	0.0	663

TFs/TRs:

Gene ID	Type	Classification
MsaG007262	TF	GARP-G2-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000220	MsaG007262	0.805076	2.686057e-49	4.079416e-47
MsaG000157	MsaG007262	0.809542	3.069386e-50	5.184093e-48
MsaG000519	MsaG007262	0.820379	1.240148e-52	2.755104e-50
MsaG000640	MsaG007262	0.866375	5.993105e-65	5.982918e-62
MsaG001009	MsaG007262	0.820751	1.019818e-52	2.287881e-50
MsaG001237	MsaG007262	0.810477	1.934857e-50	3.342871e-48
MsaG001531	MsaG007262	0.829316	9.885317e-55	2.805291e-52
MsaG001859	MsaG007262	0.821058	8.672821e-53	1.961697e-50
MsaG002013	MsaG007262	0.800171	2.730086e-48	3.705385e-46
MsaG003200	MsaG007262	0.802840	7.791956e-49	1.123655e-46
MsaG003201	MsaG007262	0.810626	1.797230e-50	3.116320e-48
MsaG003202	MsaG007262	0.809219	3.597585e-50	6.028657e-48
MsaG003239	MsaG007262	0.876066	3.899313e-68	5.880181e-65
MsaG003315	MsaG007262	0.825254	9.198455e-54	2.330000e-51
MsaG003394	MsaG007262	0.802098	1.106271e-48	1.568457e-46
MsaG003468	MsaG007262	0.813176	5.033235e-51	9.294178e-49
MsaG003768	MsaG007262	0.817790	4.784196e-52	9.931682e-50
MsaG003946	MsaG007262	0.804672	3.259047e-49	4.903422e-47
MsaG003948	MsaG007262	0.850382	3.354805e-60	1.842085e-57
MsaG003951	MsaG007262	0.827206	3.172044e-54	8.483162e-52
MsaG004108	MsaG007262	0.810883	1.582241e-50	2.760786e-48
MsaG004373	MsaG007262	0.822002	5.264266e-53	1.220862e-50
MsaG004715	MsaG007262	0.818743	2.917599e-52	6.208034e-50
MsaG004890	MsaG007262	0.825105	9.967860e-54	2.514708e-51
MsaG005329	MsaG007262	0.860388	4.205568e-63	3.319237e-60
MsaG005401	MsaG007262	0.824773	1.193384e-53	2.983289e-51
MsaG005435	MsaG007262	0.825742	7.058550e-54	1.812325e-51
MsaG005438	MsaG007262	0.809046	3.915801e-50	6.535081e-48
MsaG005506	MsaG007262	0.815983	1.212232e-51	2.402433e-49
MsaG005508	MsaG007262	0.818601	3.142515e-52	6.661828e-50
MsaG005642	MsaG007262	0.820307	1.288517e-52	2.857089e-50
MsaG005839	MsaG007262	0.811083	1.432488e-50	2.511824e-48
MsaG005811	MsaG007262	0.807029	1.047655e-49	1.665778e-47
MsaG005864	MsaG007262	0.808643	4.770474e-50	7.884440e-48
MsaG006529	MsaG007262	0.808438	5.275614e-50	8.676124e-48
MsaG007066	MsaG007262	0.822873	3.309691e-53	7.858229e-51
MsaG007262	MsaG007353	0.834411	5.535330e-56	1.821880e-53
MsaG007262	MsaG007570	0.802764	8.076269e-49	1.162647e-46
MsaG007262	MsaG007880	0.875866	4.564612e-68	6.822900e-65
MsaG007262	MsaG007716	0.814134	3.104426e-51	5.871656e-49
MsaG007262	MsaG007833	0.810153	2.270613e-50	3.891978e-48
MsaG007262	MsaG007834	0.810003	2.445263e-50	4.176136e-48
MsaG007262	MsaG008218	0.857526	2.996156e-62	2.122686e-59
MsaG007262	MsaG008220	0.804863	2.974149e-49	4.494736e-47
MsaG007262	MsaG008356	0.801177	1.705563e-48	2.368100e-46
MsaG007262	MsaG009409	0.851433	1.702085e-60	9.692102e-58
MsaG007262	MsaG010050	0.846648	3.585432e-59	1.735020e-56
MsaG007262	MsaG010053	0.817772	4.827797e-52	1.001779e-49
MsaG007262	MsaG010394	0.817923	4.466354e-52	9.303836e-50
MsaG007262	MsaG010894	0.821486	6.918913e-53	1.582762e-50
MsaG007262	MsaG010906	0.819399	2.072406e-52	4.486346e-50
MsaG007262	MsaG011080	0.855978	8.508974e-62	5.695083e-59
MsaG007262	MsaG012196	0.865148	1.455952e-64	1.383773e-61
MsaG007262	MsaG012341	0.820855	9.653061e-53	2.171564e-50
MsaG007262	MsaG012382	0.815777	1.346667e-51	2.654874e-49
MsaG007262	MsaG012422	0.834985	3.976501e-56	1.331401e-53
MsaG007262	MsaG012424	0.812853	5.919533e-51	1.084276e-48
MsaG007262	MsaG013845	0.845813	6.039428e-59	2.842669e-56
MsaG007262	MsaG013993	0.810886	1.580027e-50	2.757126e-48
MsaG007262	MsaG014732	0.819150	2.360661e-52	5.077082e-50
MsaG007262	MsaG014733	0.853306	5.013752e-61	3.049209e-58
MsaG007262	MsaG014762	0.800805	2.029758e-48	2.794758e-46
MsaG007262	MsaG014953	0.822156	4.848468e-53	1.129134e-50
MsaG007262	MsaG014927	0.802731	8.203452e-49	1.180068e-46
MsaG007262	MsaG015705	0.818622	3.108281e-52	6.592829e-50
MsaG007262	MsaG016149	0.811009	1.486339e-50	2.601449e-48
MsaG007262	MsaG016496	0.812851	5.926426e-51	1.085478e-48
MsaG007262	MsaG017058	0.804339	3.822267e-49	5.706680e-47
MsaG007262	MsaG017209	0.831788	2.470957e-55	7.530312e-53
MsaG007262	MsaG017373	0.804370	3.765693e-49	5.626269e-47
MsaG007262	MsaG018380	0.823678	2.151251e-53	5.220404e-51
MsaG007262	MsaG018447	0.835241	3.429505e-56	1.156998e-53
MsaG007262	MsaG018553	0.814884	2.121825e-51	4.089749e-49
MsaG007262	MsaG018813	0.804557	3.442929e-49	5.166369e-47
MsaG007262	MsaG019628	0.810166	2.256022e-50	3.868200e-48
MsaG007262	MsaG019684	0.822679	3.670963e-53	8.670094e-51
MsaG007262	MsaG019943	0.828599	1.472095e-54	4.093890e-52
MsaG007262	MsaG020204	0.809315	3.430864e-50	5.762509e-48
MsaG007262	MsaG020466	0.818329	3.617725e-52	7.615457e-50
MsaG007262	MsaG020540	0.847144	2.626892e-59	1.292624e-56
MsaG007262	MsaG020875	0.801684	1.344523e-48	1.888406e-46
MsaG007262	MsaG021668	0.816681	8.473132e-52	1.709425e-49
MsaG007262	MsaG021626	0.807886	6.907175e-50	1.120990e-47
MsaG007262	MsaG021765	0.825807	6.812674e-54	1.752389e-51
MsaG007262	MsaG022100	0.824908	1.108950e-53	2.782650e-51
MsaG007262	MsaG022283	0.806644	1.262115e-49	1.988744e-47
MsaG007262	MsaG022515	0.810336	2.074321e-50	3.571563e-48
MsaG007262	MsaG023374	0.815648	1.438138e-51	2.826130e-49
MsaG007262	MsaG024061	0.811538	1.142669e-50	2.026065e-48
MsaG007262	MsaG024228	0.804679	3.247940e-49	4.887495e-47
MsaG007262	MsaG025232	0.825319	8.879827e-54	2.253429e-51
MsaG007262	MsaG026714	0.804661	3.276284e-49	4.928011e-47
MsaG007262	MsaG026985	0.803746	5.070696e-49	7.467184e-47
MsaG007262	MsaG027235	0.805481	2.211480e-49	3.390350e-47
MsaG007262	MsaG027340	0.803357	6.098445e-49	8.900225e-47
MsaG007262	MsaG027568	0.819163	2.344341e-52	5.043796e-50
MsaG007262	MsaG028026	0.820008	1.507398e-52	3.316033e-50
MsaG007262	MsaG028163	0.834506	5.243427e-56	1.730585e-53
MsaG007262	MsaG028457	0.800714	2.118249e-48	2.910655e-46
MsaG007262	MsaG028503	0.803219	6.512213e-49	9.473814e-47
MsaG007262	MsaG028735	0.823374	2.532833e-53	6.095697e-51
MsaG007262	MsaG028698	0.879473	2.551300e-69	4.494485e-66
MsaG007262	MsaG029017	0.800222	2.665748e-48	3.622263e-46
MsaG007262	MsaG029899	0.812059	8.808318e-51	1.581892e-48
MsaG007262	MsaG029888	0.806814	1.162298e-49	1.838744e-47
MsaG007262	MsaG031798	0.809918	2.550100e-50	4.346221e-48
MsaG007262	MsaG033693	0.810512	1.901073e-50	3.287316e-48
MsaG007262	MsaG033959	0.809022	3.963253e-50	6.610278e-48
MsaG007262	MsaG034977	0.810188	2.232179e-50	3.829312e-48
MsaG007262	MsaG035463	0.809447	3.216244e-50	5.419721e-48
MsaG007262	MsaG035511	0.845832	5.966584e-59	2.810107e-56
MsaG007262	MsaG036326	0.833384	9.978356e-56	3.185639e-53
MsaG007262	MsaG040541	0.815799	1.331458e-51	2.626441e-49
MsaG007262	MsaG040704	0.800985	1.866201e-48	2.579929e-46
MsaG007262	MsaG040985	0.819650	1.818212e-52	3.961780e-50
MsaG007262	MsaG041644	0.830922	4.026285e-55	1.196384e-52
MsaG007262	MsaG041901	0.805789	1.907123e-49	2.944929e-47
MsaG007262	MsaG041903	0.811444	1.196988e-50	2.117523e-48
MsaG007262	MsaG041949	0.801903	1.212485e-48	1.711513e-46
MsaG007262	MsaG042458	0.801673	1.351004e-48	1.897054e-46
MsaG007262	MsaG042632	0.843896	1.973925e-58	8.723037e-56
MsaG007262	MsaG043659	0.852334	9.472532e-61	5.567579e-58
MsaG007262	MsaG044376	0.822835	3.377131e-53	8.010016e-51
MsaG007262	MsaG044377	0.803296	6.277660e-49	9.148845e-47
MsaG007262	MsaG044584	0.872517	6.142097e-67	7.925052e-64
MsaG007262	MsaG045021	0.814807	2.206902e-51	4.245449e-49
MsaG007262	MsaG045371	0.807841	7.057555e-50	1.144157e-47
MsaG007262	MsaG045409	0.816640	8.653191e-52	1.743884e-49
MsaG007262	MsaG045445	0.840783	1.307632e-57	5.231557e-55
MsaG007262	MsaG045446	0.810926	1.548319e-50	2.704478e-48
MsaG007262	MsaG045487	0.816778	8.060767e-52	1.630334e-49
MsaG007262	MsaG045641	0.808024	6.455807e-50	1.051230e-47
MsaG007262	MsaG045548	0.824720	1.227815e-53	3.064923e-51
MsaG007262	MsaG045549	0.831273	3.304762e-55	9.919499e-53
MsaG007262	MsaG046051	0.832109	2.060917e-55	6.339507e-53
MsaG007262	MsaG046096	0.851151	2.042270e-60	1.151672e-57
MsaG007262	MsaG046102	0.855490	1.179306e-61	7.755286e-59
MsaG007262	MsaG046205	0.832325	1.823268e-55	5.643188e-53
MsaG007262	MsaG046619	0.862293	1.111319e-63	9.433678e-61
MsaG007262	MsaG046630	0.811962	9.247362e-51	1.656857e-48
MsaG007262	MsaG046656	0.834503	5.251144e-56	1.733012e-53
MsaG007262	MsaG046816	0.857996	2.176799e-62	1.569434e-59
MsaG007262	MsaG047054	0.861117	2.533283e-63	2.055180e-60
MsaG007262	MsaG047092	0.808501	5.114384e-50	8.423915e-48
MsaG007262	MsaG002242	0.832901	1.314053e-55	4.136171e-53
MsaG007262	MsaG007590	0.807287	9.242956e-50	1.478639e-47
MsaG007262	MsaG008770	0.823925	1.884187e-53	4.602732e-51
MsaG007262	MsaG014938	0.803859	4.803615e-49	7.092351e-47
MsaG007262	MsaG020796	0.856647	5.426093e-62	3.722032e-59
MsaG007262	MsaG018968	0.806324	1.473404e-49	2.304206e-47
MsaG007262	MsaG018864	0.820792	9.981848e-53	2.241805e-50
MsaG007262	MsaG018678	0.821894	5.574279e-53	1.289039e-50
MsaG007262	MsaG021169	0.813320	4.680721e-51	8.674232e-49
MsaG007262	MsaG018378	0.827393	2.862914e-54	7.696822e-52
MsaG007262	MsaG026285	0.817142	6.683565e-52	1.364576e-49
MsaG007262	MsaG028073	0.848311	1.258310e-59	6.438654e-57
MsaG007262	MsaG027699	0.858715	1.332351e-62	9.866628e-60
MsaG007262	MsaG031221	0.810077	2.357034e-50	4.032732e-48
MsaG007262	MsaG032591	0.810905	1.565069e-50	2.732295e-48
MsaG007262	MsaG032092	0.829014	1.169392e-54	3.290103e-52
MsaG007262	MsaG031747	0.837445	9.493994e-57	3.423432e-54
MsaG007262	MsaG036029	0.808715	4.606391e-50	7.626652e-48
MsaG007262	MsaG037687	0.847063	2.764231e-59	1.356470e-56
MsaG007262	MsaG036546	0.856238	7.144361e-62	4.828333e-59
MsaG007262	MsaG037133	0.824026	1.784578e-53	4.371523e-51
MsaG007262	MsaG036984	0.812181	8.287274e-51	1.492835e-48
MsaG007262	MsaG044075	0.838703	4.520513e-57	1.694567e-54

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007262	MtrunA17_Chr2g0291021	97.273	330	9	0	1	330	1	330	0.0	663
MsaG007262	MtrunA17_Chr7g0254981	73.050	141	37	1	49	188	50	190	8.39e-69	216
MsaG007262	MtrunA17_Chr7g0261911	60.390	154	52	3	33	186	252	396	6.97e-53	181
MsaG007262	MtrunA17_Chr1g0175091	48.087	183	77	3	35	217	244	408	1.95e-51	176
MsaG007262	MtrunA17_Chr1g0190301	53.216	171	73	3	33	200	156	322	1.24e-48	167
MsaG007262	MtrunA17_Chr7g0258551	51.351	148	69	2	46	193	209	353	2.99e-47	164
MsaG007262	MtrunA17_Chr7g0274471	53.333	150	68	1	48	197	217	364	1.35e-46	163
MsaG007262	MtrunA17_Chr8g0356501	59.398	133	51	2	49	179	37	168	4.32e-44	154
MsaG007262	MtrunA17_Chr5g0409731	52.448	143	58	1	49	181	25	167	6.24e-44	152
MsaG007262	MtrunA17_Chr4g0042451	44.792	192	80	6	47	220	15	198	2.14e-43	152
MsaG007262	MtrunA17_Chr2g0310011	58.779	131	47	2	49	175	35	162	4.51e-42	149
MsaG007262	MtrunA17_Chr7g0242521	46.497	157	75	4	49	200	13	165	5.75e-41	143
MsaG007262	MtrunA17_Chr5g0417521	44.262	183	87	5	47	217	13	192	7.39e-41	146
MsaG007262	MtrunA17_Chr2g0321461	49.682	157	61	3	47	185	43	199	9.79e-41	146
MsaG007262	MtrunA17_Chr6g0461641	48.701	154	63	2	47	185	40	192	1.19e-40	146
MsaG007262	MtrunA17_Chr2g0290991	47.826	138	56	2	49	173	39	173	2.40e-34	127
MsaG007262	MtrunA17_Chr1g0197171	47.059	136	63	2	49	176	44	178	7.00e-33	123
MsaG007262	MtrunA17_Chr1g0175071	46.043	139	66	2	49	184	177	309	1.08e-30	118
MsaG007262	MtrunA17_Chr1g0175081	48.000	75	39	0	35	109	8	82	2.97e-22	89.7
MsaG007262	MtrunA17_Chr7g0258531	37.222	180	94	5	13	180	171	343	7.52e-22	94.7
MsaG007262	MtrunA17_Chr2g0288601	66.071	56	19	0	51	106	73	128	1.03e-16	75.5
MsaG007262	MtrunA17_Chr7g0243081	61.404	57	22	0	51	107	73	129	1.49e-16	79.3
MsaG007262	MtrunA17_Chr6g0479431	60.000	65	24	1	51	113	204	268	2.58e-16	79.0
MsaG007262	MtrunA17_Chr8g0366281	46.535	101	44	3	51	151	175	265	2.77e-16	78.6
MsaG007262	MtrunA17_Chr3g0095611	48.718	78	24	1	51	112	21	98	7.91e-16	75.1
MsaG007262	MtrunA17_Chr1g0198601	56.061	66	29	0	49	114	211	276	1.48e-15	76.6
MsaG007262	MtrunA17_Chr5g0410741	63.636	55	20	0	51	105	221	275	2.24e-15	76.3
MsaG007262	MtrunA17_Chr8g0379121	63.636	55	20	0	51	105	113	167	2.34e-15	76.6
MsaG007262	MtrunA17_Chr1g0162931	53.425	73	33	1	51	123	20	91	2.89e-15	75.1
MsaG007262	MtrunA17_Chr3g0109981	63.636	55	20	0	51	105	276	330	3.19e-15	76.3
MsaG007262	MtrunA17_Chr2g0320231	65.455	55	19	0	51	105	99	153	4.52e-15	75.5
MsaG007262	MtrunA17_Chr1g0154261	61.818	55	21	0	51	105	128	182	5.88e-15	74.3
MsaG007262	MtrunA17_Chr1g0210911	65.385	52	18	0	51	102	24	75	6.45e-15	74.7
MsaG007262	MtrunA17_Chr5g0402631	55.714	70	30	1	49	117	214	283	4.10e-14	72.4
MsaG007262	MtrunA17_Chr2g0283951	67.347	49	16	0	51	99	91	139	1.46e-13	70.9
MsaG007262	MtrunA17_Chr5g0422621	58.182	55	23	0	49	103	198	252	5.22e-13	68.9
MsaG007262	MtrunA17_Chr4g0062921	48.718	78	39	1	39	115	224	301	6.08e-13	69.3
MsaG007262	MtrunA17_Chr4g0009981	50.685	73	33	2	41	113	108	177	1.01e-12	67.4
MsaG007262	MtrunA17_Chr4g0045361	60.000	55	22	0	49	103	274	328	1.17e-12	68.2
MsaG007262	MtrunA17_Chr4g0009901	56.364	55	23	1	49	103	168	221	1.98e-12	66.6
MsaG007262	MtrunA17_Chr4g0031961	48.611	72	35	2	49	119	131	201	7.83e-12	65.1
MsaG007262	MtrunA17_Chr2g0324891	50.820	61	29	1	42	102	154	213	9.01e-12	65.5
MsaG007262	MtrunA17_Chr5g0400241	43.038	79	44	1	27	105	289	366	1.27e-11	65.5
MsaG007262	MtrunA17_Chr7g0255711	58.182	55	22	1	49	103	91	144	1.33e-11	64.3
MsaG007262	MtrunA17_Chr4g0009851	52.308	65	28	2	49	113	169	230	2.08e-11	63.9
MsaG007262	MtrunA17_Chr2g0304841	54.545	55	24	1	49	103	213	266	2.56e-11	64.7
MsaG007262	MtrunA17_Chr4g0067981	58.182	55	22	1	49	103	215	268	3.46e-11	64.3
MsaG007262	MtrunA17_Chr4g0040481	53.704	54	24	1	49	102	158	210	4.84e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007262	AT2G01060.1	66.779	298	69	9	43	330	9	286	3.04e-119	345
MsaG007262	AT2G01060.2	62.646	257	66	9	84	330	1	237	1.80e-88	265
MsaG007262	AT5G29000.1	57.692	156	63	2	29	183	170	323	2.09e-51	174
MsaG007262	AT5G29000.3	57.692	156	63	2	29	183	170	323	2.09e-51	174
MsaG007262	AT5G29000.2	57.692	156	63	2	29	183	213	366	4.06e-51	175
MsaG007262	AT3G04450.4	52.273	176	76	3	44	212	193	367	7.56e-51	174
MsaG007262	AT3G04450.2	52.273	176	76	3	44	212	193	367	7.56e-51	174
MsaG007262	AT3G04450.1	52.273	176	76	3	44	212	233	407	1.34e-50	174
MsaG007262	AT4G28610.1	52.432	185	80	4	41	225	217	393	4.26e-50	172
MsaG007262	AT5G06800.1	57.534	146	57	3	37	182	182	322	6.49e-50	171
MsaG007262	AT4G13640.1	59.574	141	47	2	49	179	37	177	1.91e-49	167
MsaG007262	AT3G13040.3	50.265	189	86	4	44	227	236	421	1.98e-49	171
MsaG007262	AT3G13040.1	50.265	189	86	4	44	227	236	421	1.98e-49	171
MsaG007262	AT3G13040.2	50.265	189	86	4	44	227	236	421	1.98e-49	171
MsaG007262	AT3G24120.1	58.156	141	49	2	49	179	41	181	7.71e-49	166
MsaG007262	AT5G06800.2	55.705	149	60	3	37	182	182	327	7.97e-49	168
MsaG007262	AT1G79430.2	61.268	142	47	3	49	185	34	172	2.76e-48	166
MsaG007262	AT4G13640.2	58.333	144	47	3	49	179	37	180	3.08e-47	161
MsaG007262	AT3G24120.2	56.944	144	49	3	49	179	41	184	9.96e-47	160
MsaG007262	AT3G04030.3	48.333	180	72	4	23	185	19	194	8.16e-43	152
MsaG007262	AT1G69580.2	49.693	163	65	3	47	192	32	194	9.30e-43	151
MsaG007262	AT2G20400.2	53.165	158	71	2	49	206	231	385	1.04e-42	152
MsaG007262	AT1G69580.1	49.091	165	62	4	47	192	32	193	1.05e-42	150
MsaG007262	AT2G20400.1	53.797	158	69	2	49	206	231	384	1.33e-42	152
MsaG007262	AT5G18240.1	51.316	152	61	1	47	185	43	194	4.04e-42	150
MsaG007262	AT5G18240.4	51.316	152	61	1	47	185	43	194	4.04e-42	150
MsaG007262	AT3G04030.2	47.778	180	72	5	23	185	19	193	3.73e-40	145
MsaG007262	AT5G18240.5	50.000	152	61	2	47	185	43	192	7.33e-39	142
MsaG007262	AT5G45580.1	45.223	157	56	3	49	182	7	156	4.34e-37	134
MsaG007262	AT3G04030.1	45.556	180	71	5	23	185	19	188	6.82e-37	136
MsaG007262	AT5G45580.2	45.860	157	55	3	49	182	23	172	8.00e-37	134
MsaG007262	AT5G18240.2	48.026	152	60	2	47	185	43	188	3.20e-36	135
MsaG007262	AT5G18240.3	48.026	152	60	2	47	185	43	188	3.20e-36	135
MsaG007262	AT3G12730.1	47.826	138	64	4	49	179	23	159	3.09e-35	128
MsaG007262	AT1G79430.1	54.545	110	42	3	81	185	1	107	4.73e-27	108
MsaG007262	AT5G29000.4	60.674	89	33	1	29	117	213	299	3.09e-25	103
MsaG007262	AT3G04450.3	64.286	70	25	0	44	113	233	302	3.48e-25	103
MsaG007262	AT3G04030.5	49.153	118	47	2	81	185	1	118	1.34e-24	102
MsaG007262	AT5G06800.3	60.563	71	26	1	45	115	188	256	5.54e-24	99.8
MsaG007262	AT3G04030.4	44.915	118	46	3	81	185	1	112	4.54e-19	86.7
MsaG007262	AT5G18240.6	43.220	118	48	2	81	185	1	112	5.52e-19	86.7
MsaG007262	AT2G06020.1	59.649	57	23	0	49	105	86	142	7.10e-18	83.2
MsaG007262	AT2G42660.1	65.517	58	20	0	51	108	52	109	2.94e-17	80.5
MsaG007262	AT2G40260.1	57.333	75	20	1	51	125	84	146	3.08e-17	82.4
MsaG007262	AT4G04605.1	69.231	52	16	0	51	102	16	67	4.16e-17	79.3
MsaG007262	AT1G32240.1	43.396	106	51	2	51	156	215	311	1.79e-16	80.1
MsaG007262	AT1G32240.2	43.396	106	51	2	51	156	215	311	1.99e-16	79.7
MsaG007262	AT5G42630.2	57.576	66	28	0	51	116	107	172	4.46e-16	76.6
MsaG007262	AT5G42630.1	57.576	66	28	0	51	116	107	172	5.78e-16	77.4
MsaG007262	AT3G12730.2	39.623	106	56	4	81	179	1	105	1.29e-15	74.3
MsaG007262	AT5G16560.1	60.000	65	24	1	51	113	221	285	1.62e-15	77.4
MsaG007262	AT1G14600.1	69.231	52	16	0	51	102	25	76	2.03e-15	75.5
MsaG007262	AT4G17695.1	63.636	55	20	0	51	105	166	220	3.12e-15	75.9
MsaG007262	AT2G02060.2	69.231	52	16	0	51	102	31	82	3.28e-15	74.7
MsaG007262	AT2G02060.1	69.231	52	16	0	51	102	31	82	3.28e-15	74.7
MsaG007262	AT2G38300.1	63.636	55	20	0	51	105	56	110	3.76e-15	75.9
MsaG007262	AT4G37180.1	60.000	55	22	0	49	103	210	264	3.44e-14	73.2
MsaG007262	AT4G37180.2	60.000	55	22	0	49	103	217	271	4.20e-14	72.8
MsaG007262	AT4G04580.1	54.545	55	25	0	51	105	16	70	1.20e-13	68.6
MsaG007262	AT1G49560.1	54.545	66	30	0	49	114	192	257	1.52e-13	70.9
MsaG007262	AT3G25790.1	58.182	55	23	0	54	108	201	255	2.98e-13	70.1
MsaG007262	AT1G25550.1	55.385	65	29	0	44	108	204	268	5.27e-13	69.3
MsaG007262	AT3G10760.1	48.101	79	40	1	25	103	81	158	7.96e-13	68.9
MsaG007262	AT1G13300.1	44.086	93	41	2	16	108	159	240	1.40e-12	68.2
MsaG007262	AT1G68670.1	48.052	77	40	0	42	118	208	284	1.82e-12	67.8
MsaG007262	AT5G05090.1	60.377	53	20	1	51	103	83	134	4.25e-12	65.9
MsaG007262	AT4G37180.3	55.172	58	26	0	49	106	210	267	6.17e-12	65.5
MsaG007262	AT5G58080.1	52.174	69	28	3	49	117	194	257	7.07e-12	66.6
MsaG007262	AT5G59570.2	58.491	53	21	1	51	103	143	194	9.86e-12	65.1
MsaG007262	AT5G59570.1	58.491	53	21	1	51	103	143	194	9.86e-12	65.1
MsaG007262	AT3G46640.2	58.491	53	21	1	51	103	146	197	1.21e-11	65.1
MsaG007262	AT3G46640.1	58.491	53	21	1	51	103	146	197	1.21e-11	65.1
MsaG007262	AT3G46640.3	58.491	53	21	1	51	103	146	197	1.24e-11	65.1
MsaG007262	AT2G20570.1	51.471	68	31	2	35	102	140	205	1.35e-11	65.5
MsaG007262	AT2G03500.1	53.226	62	29	0	47	108	231	292	1.63e-11	65.5
MsaG007262	AT2G01760.3	45.333	75	38	2	49	123	135	206	1.66e-11	64.7
MsaG007262	AT5G44190.1	46.154	65	34	1	38	102	136	199	2.79e-11	64.3
MsaG007262	AT2G01760.1	45.333	75	38	2	49	123	200	271	2.96e-11	64.3
MsaG007262	AT5G44190.2	46.154	65	34	1	38	102	136	199	3.20e-11	63.9
MsaG007262	AT2G01760.2	45.333	75	38	2	49	123	228	299	4.22e-11	63.9
MsaG007262	AT2G40970.1	56.364	55	23	1	49	103	105	158	4.60e-11	62.8
MsaG007262	AT3G25790.2	58.696	46	19	0	54	99	201	246	9.79e-11	62.0

Find 87 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTCCTGATTCGAGTTTAAT+TGG	0.223090	2:+15764564	MsaT007262.1:CDS
GATCACTTTGATCCTTCTTT+AGG	0.297515	2:+15766458	MsaT007262.1:CDS
CCATGTTAAGAGCCATTTGC+AGG	0.349218	2:+15765006	MsaT007262.1:CDS
TACAAGAAGTGGTGAGGAAT+TGG	0.349818	2:+15766487	MsaT007262.1:CDS
TGCAGAGACAGCTACAATTA+AGG	0.349960	2:+15766015	MsaT007262.1:CDS
CTTCCAATTAAACTCGAATC+AGG	0.368180	2:-15764567	None:intergenic
TTAGTTGATCTCTCGCCATT+AGG	0.374486	2:-15766317	None:intergenic
CATAACTCTGAGGACACCTT+TGG	0.375653	2:-15764960	None:intergenic
CAAAGGTGTCCTCAGAGTTA+TGG	0.377183	2:+15764961	MsaT007262.1:CDS
ATGTGCTGACCATGAACTAA+TGG	0.385679	2:-15764594	None:intergenic
GAACCGATGACACCAGATTC+TGG	0.386395	2:+15766266	MsaT007262.1:CDS
AAGACTGACAAGAAAGAAAC+GGG	0.390608	2:+15765304	MsaT007262.1:CDS
TGAGTTGAGATTAGAGTTGT+TGG	0.390955	2:-15764667	None:intergenic
GGAAAACAGCGGTTGGTTGC+TGG	0.394253	2:-15766427	None:intergenic
AAAGGTGTCCTCAGAGTTAT+GGG	0.402741	2:+15764962	MsaT007262.1:CDS
ACAATTAAGGATAGAAGCTC+AGG	0.410929	2:+15766028	MsaT007262.1:CDS
GGAAGCAATCCATTAGTTCA+TGG	0.415844	2:+15764585	MsaT007262.1:CDS
CATTTGAAGCTTTAGTGCTT+CGG	0.424328	2:-15765686	None:intergenic
GATATGCTTTCCAATCTAGA+TGG	0.424452	2:+15765328	MsaT007262.1:CDS
TCCTGTTGGGACATATCTCC+TGG	0.428112	2:-15766140	None:intergenic
TCTGCTGAAAGACTCTTTGC+TGG	0.439579	2:-15766224	None:intergenic
GGTGCTTCCTCATCAGATAC+TGG	0.444138	2:+15766385	MsaT007262.1:CDS
CTTTCAGAAGCACCCGGCTC+TGG	0.447624	2:+15766101	MsaT007262.1:CDS
CCGACTTGGCAACCAGAATC+TGG	0.448662	2:-15766278	None:intergenic
CTCGAATCAGGAACATTAGT+TGG	0.450860	2:-15764555	None:intergenic
TCTCCTGCTGACAGTCCTAA+TGG	0.454643	2:+15766302	MsaT007262.1:CDS
TCACGATGAACCATCTAGAT+TGG	0.455940	2:-15765338	None:intergenic
GTTGATGCTGTGGCTCAACT+TGG	0.466308	2:+15764732	MsaT007262.1:CDS
AAGAAGGATCAAAGTGATCT+CGG	0.468691	2:-15766454	None:intergenic
GAAGCGACTACATGAACAAT+TGG	0.469698	2:+15765717	MsaT007262.1:CDS
CGAAGCACTAAAGCTTCAAA+TGG	0.471790	2:+15765687	MsaT007262.1:CDS
TCCAGGAGATATGTCCCAAC+AGG	0.476349	2:+15766139	MsaT007262.1:CDS
ATAACTCTGAGGACACCTTT+GGG	0.476739	2:-15764959	None:intergenic
TCTTATTGTCGAGCTCCTGT+TGG	0.481895	2:-15766154	None:intergenic
CTTATTGTCGAGCTCCTGTT+GGG	0.485642	2:-15766153	None:intergenic
CTCAGAGTTATGGGTGTACA+AGG	0.485843	2:+15764971	MsaT007262.1:CDS
GGTAGGAGCGCTATGGATCC+TGG	0.493466	2:+15764624	MsaT007262.1:CDS
CATGGTCAGCACATAGAGTC+TGG	0.500025	2:+15764603	MsaT007262.1:CDS
GAGTGCACATTACCTGCAAA+TGG	0.500488	2:-15765018	None:intergenic
AAAGACTGACAAGAAAGAAA+CGG	0.503951	2:+15765303	MsaT007262.1:CDS
TCCTTAGGTGCCACACCCAA+AGG	0.508503	2:+15764944	MsaT007262.1:intron
GATGCTGTGGCTCAACTTGG+TGG	0.512420	2:+15764735	MsaT007262.1:CDS
GCTCGACAATAAGACTGAAC+CGG	0.517717	2:+15766163	MsaT007262.1:CDS
TGGTGCTGATACACCAGAGC+CGG	0.522258	2:-15766114	None:intergenic
AATCTGGTGTCATCGGTTCA+TGG	0.523061	2:-15766262	None:intergenic
GATCAAAGTGATCTCGGGTA+AGG	0.525714	2:-15766448	None:intergenic
CCTGCAAATGGCTCTTAACA+TGG	0.525821	2:-15765006	None:intergenic
CCAGATTCTGGTTGCCAAGT+CGG	0.528854	2:+15766278	MsaT007262.1:CDS
GTACCATCGGATGAGCAGTC+AGG	0.531157	2:-15765138	None:intergenic
ACTCAAAGCAACGTTTGCGT+TGG	0.531602	2:+15764685	MsaT007262.1:CDS
AGAAGGATCAAAGTGATCTC+GGG	0.531953	2:-15766453	None:intergenic
GGTGTATCAGCACCAACTCC+AGG	0.533448	2:+15766122	MsaT007262.1:CDS
AGCGCTATGGATCCTGGTAG+TGG	0.534994	2:+15764630	MsaT007262.1:CDS
CTTGTAGACATGCCTAAAGA+AGG	0.541592	2:-15766470	None:intergenic
TTAGGCATGTCTACAAGAAG+TGG	0.546196	2:+15766476	MsaT007262.1:CDS
CGGGTAAGGAAAACAGCGGT+TGG	0.546421	2:-15766434	None:intergenic
GGTGCTGATACACCAGAGCC+GGG	0.552630	2:-15766113	None:intergenic
TCTGAGGACACCTTTGGGTG+TGG	0.554653	2:-15764954	None:intergenic
CAACCAGAATCTGGTGTCAT+CGG	0.558599	2:-15766269	None:intergenic
AGAGTCTGGTAGGAGCGCTA+TGG	0.562642	2:+15764617	MsaT007262.1:CDS
GCGGTTGGTTGCTGGTATGA+TGG	0.564870	2:-15766419	None:intergenic
TGTCAGCAGGAGAACCGACT+TGG	0.567410	2:-15766292	None:intergenic
AATTGGATAAGCTTGGTGGC+AGG	0.568213	2:+15766504	MsaT007262.1:CDS
TGGGACATATCTCCTGGAGT+TGG	0.568536	2:-15766134	None:intergenic
AGACTGTTTCCTCCACTACC+AGG	0.568775	2:-15764642	None:intergenic
AAGAGCAACAGCGACTCAGT+GGG	0.575024	2:+15766075	MsaT007262.1:CDS
TCGCCATTAGGACTGTCAGC+AGG	0.575904	2:-15766305	None:intergenic
GGTGAGGAATTGGATAAGCT+TGG	0.592014	2:+15766497	MsaT007262.1:CDS
TTACCTGACTGCTCATCCGA+TGG	0.595863	2:+15765135	MsaT007262.1:CDS
GCGACTACATGAACAATTGG+AGG	0.598747	2:+15765720	MsaT007262.1:CDS
TGAACGCTTTGTTGATGCTG+TGG	0.601507	2:+15764722	MsaT007262.1:CDS
GGGGTTCTTTCAGAAGCACC+CGG	0.619430	2:+15766095	MsaT007262.1:CDS
GTCAGCACATAGAGTCTGGT+AGG	0.630464	2:+15764607	MsaT007262.1:CDS
AGCACTAAAGCTTCAAATGG+AGG	0.636135	2:+15765690	MsaT007262.1:CDS
GAAGAGCAACAGCGACTCAG+TGG	0.642615	2:+15766074	MsaT007262.1:CDS
CTTGACTCCAGTATCTGATG+AGG	0.648174	2:-15766392	None:intergenic
CATGTCTACAAGAAGTGGTG+AGG	0.650625	2:+15766481	MsaT007262.1:CDS
GAGGAATTGGATAAGCTTGG+TGG	0.651592	2:+15766500	MsaT007262.1:CDS
CAATTAAGGATAGAAGCTCA+GGG	0.654933	2:+15766029	MsaT007262.1:CDS
GGGGAAAATACTCACGATCG+GGG	0.658151	2:-15764758	None:intergenic
GCTATGGATCCTGGTAGTGG+AGG	0.662575	2:+15764633	MsaT007262.1:CDS
GACTGACAAGAAAGAAACGG+GGG	0.678708	2:+15765306	MsaT007262.1:CDS
AGCGTATTTGAAATCAGACA+TGG	0.689566	2:+15766364	MsaT007262.1:CDS
AGAGCAACAGCGACTCAGTG+GGG	0.711050	2:+15766076	MsaT007262.1:CDS
CTTGTACACCCATAACTCTG+AGG	0.715783	2:-15764970	None:intergenic
ATCTCGGGTAAGGAAAACAG+CGG	0.741797	2:-15766438	None:intergenic
AGACTGACAAGAAAGAAACG+GGG	0.753105	2:+15765305	MsaT007262.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	15764546	15766535	15764546	ID=MsaG007262
Chr2	mRNA	15764546	15766535	15764546	ID=MsaT007262.1;Parent=MsaG007262
Chr2	exon	15764546	15764765	15764546	ID=MsaT007262.1.exon1;Parent=MsaT007262.1
Chr2	CDS	15764546	15764765	15764546	ID=cds.MsaT007262.1;Parent=MsaT007262.1
Chr2	exon	15764951	15765027	15764951	ID=MsaT007262.1.exon2;Parent=MsaT007262.1
Chr2	CDS	15764951	15765027	15764951	ID=cds.MsaT007262.1;Parent=MsaT007262.1
Chr2	exon	15765114	15765156	15765114	ID=MsaT007262.1.exon3;Parent=MsaT007262.1
Chr2	CDS	15765114	15765156	15765114	ID=cds.MsaT007262.1;Parent=MsaT007262.1
Chr2	exon	15765296	15765356	15765296	ID=MsaT007262.1.exon4;Parent=MsaT007262.1
Chr2	CDS	15765296	15765356	15765296	ID=cds.MsaT007262.1;Parent=MsaT007262.1
Chr2	exon	15765672	15765741	15765672	ID=MsaT007262.1.exon5;Parent=MsaT007262.1
Chr2	CDS	15765672	15765741	15765672	ID=cds.MsaT007262.1;Parent=MsaT007262.1
Chr2	exon	15766014	15766535	15766014	ID=MsaT007262.1.exon6;Parent=MsaT007262.1
Chr2	CDS	15766014	15766535	15766014	ID=cds.MsaT007262.1;Parent=MsaT007262.1

Gene Sequence

>MsaT007262.1

ATGTATCAGCCAACTAATGTTCCTGATTCGAGTTTAATTGGAAGCAATCCATTAGTTCATGGTCAGCACATAGAGTCTGGTAGGAGCGCTATGGATCCTGGTAGTGGAGGAAACAGTCTTGCCAACAACTCTAATCTCAACTCAAAGCAACGTTTGCGTTGGACACATGAGCTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGTGGCCCCGATCGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACAATTTACCATGTTAAGAGCCATTTGCAGAAATACCGACTAGCAAAATACTTACCTGACTGCTCATCCGATGAGGGGAAAAAGACTGACAAGAAAGAAACGGGGGATATGCTTTCCAATCTAGATGGTTCATCGGGGATGCAGATTACCGAAGCACTAAAGCTTCAAATGGAGGTACAGAAGCGACTACATGAACAATTGGAGGTGCAGAGACAGCTACAATTAAGGATAGAAGCTCAGGGAAAATATTTGAAAAAGATAATCGAAGAGCAACAGCGACTCAGTGGGGTTCTTTCAGAAGCACCCGGCTCTGGTGTATCAGCACCAACTCCAGGAGATATGTCCCAACAGGAGCTCGACAATAAGACTGAACCGGCAACCCCTGACCCAGAAAAAGCTGCTAAAGAGCATGCACCAGCAAAGAGTCTTTCAGCAGAATCTTTTTCATCTCACCATGAACCGATGACACCAGATTCTGGTTGCCAAGTCGGTTCTCCTGCTGACAGTCCTAATGGCGAGAGATCAACTAAAAAGCAACGAGTAAGCGTGGAAGAAGCGTATTTGAAATCAGACATGGTGCTTCCTCATCAGATACTGGAGTCAAGCATGCCATCATACCAGCAACCAACCGCTGTTTTCCTTACCCGAGATCACTTTGATCCTTCTTTAGGCATGTCTACAAGAAGTGGTGAGGAATTGGATAAGCTTGGTGGCAGGAATATGTGA

Protein sequence

>MsaT007262.1

MYQPTNVPDSSLIGSNPLVHGQHIESGRSAMDPGSGGNSLANNSNLNSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDCSSDEGKKTDKKETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPGSGVSAPTPGDMSQQELDNKTEPATPDPEKAAKEHAPAKSLSAESFSSHHEPMTPDSGCQVGSPADSPNGERSTKKQRVSVEEAYLKSDMVLPHQILESSMPSYQQPTAVFLTRDHFDPSLGMSTRSGEELDKLGGRNM*