AlfalfaGEDB | MsaG007265

M. sativa ssp. caerulea / MsaG007265

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007265	XP_024632861.2	87.333	600	36	2	1	560	1	600	0.0	1082

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007265	sp\|Q9SZL8\|FRS5_ARATH	32.343	572	331	9	4	525	70	635	3.91e-91	301

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007265	tr\|A0A151RX65\|A0A151RX65_CAJCA	64.894	658	186	5	1	613	1	658	0.0	865

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TFs/TRs:

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Gene ID	Type	Classification
MsaG007265	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000269	MsaG007265	0.806560	1.314354e-49	2.066976e-47
MsaG000528	MsaG007265	0.810229	2.186532e-50	3.754912e-48
MsaG000647	MsaG007265	0.805101	2.654340e-49	4.033539e-47
MsaG000675	MsaG007265	0.804471	3.588182e-49	5.373466e-47
MsaG000712	MsaG007265	0.838013	6.798560e-57	2.494369e-54
MsaG000766	MsaG007265	0.827802	2.285746e-54	6.216142e-52
MsaG000790	MsaG007265	0.812517	7.006267e-51	1.272691e-48
MsaG000791	MsaG007265	0.805779	1.916151e-49	2.958161e-47
MsaG000807	MsaG007265	0.834437	5.453926e-56	1.796449e-53
MsaG001232	MsaG007265	0.804185	4.112389e-49	6.117998e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007265	MtrunA17_Chr2g0324011	46.508	587	273	3	4	549	7	593	0.0	557
MsaG007265	MtrunA17_Chr3g0082121	36.103	662	358	8	4	614	40	687	4.29e-135	410
MsaG007265	MtrunA17_Chr1g0203721	32.310	619	360	9	9	576	65	675	1.85e-114	362
MsaG007265	MtrunA17_Chr6g0458391	32.218	568	314	9	4	524	222	765	3.88e-98	316
MsaG007265	MtrunA17_Chr5g0448761	31.507	584	346	9	4	536	57	637	9.48e-91	297
MsaG007265	MtrunA17_Chr1g0202341	29.600	625	381	10	6	576	50	669	1.23e-90	295
MsaG007265	MtrunA17_Chr8g0363841	33.333	519	311	7	38	525	64	578	8.83e-90	292
MsaG007265	MtrunA17_Chr7g0258861	44.330	291	118	4	2	248	5	295	3.92e-82	260
MsaG007265	MtrunA17_Chr2g0287651	31.183	558	334	7	13	525	81	633	1.80e-80	271
MsaG007265	MtrunA17_Chr1g0164591	39.739	307	150	3	77	357	10	307	3.93e-73	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007265	AT4G38180.1	32.343	572	331	9	4	525	70	635	3.97e-92	301
MsaG007265	AT4G15090.1	26.462	650	424	8	4	610	48	686	8.53e-79	266
MsaG007265	AT4G15090.5	26.462	650	424	8	4	610	48	686	8.53e-79	266
MsaG007265	AT4G15090.3	26.462	650	424	8	4	610	48	686	8.53e-79	266
MsaG007265	AT4G15090.2	26.462	650	424	8	4	610	48	686	8.53e-79	266
MsaG007265	AT4G15090.4	26.462	650	424	8	4	610	48	686	8.53e-79	266
MsaG007265	AT3G22170.2	29.002	531	313	7	36	526	114	620	6.57e-69	239
MsaG007265	AT3G22170.1	29.002	531	313	7	36	526	114	620	6.57e-69	239
MsaG007265	AT1G76320.3	27.370	559	350	9	11	526	1	546	2.22e-59	211
MsaG007265	AT1G76320.2	27.370	559	350	9	11	526	1	546	4.94e-59	211

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Find 95 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGCTGAGTCATATGAG+TGG	0.739165	2:+15886120	MsaT007265.1:intron
AAATTTGTCCCCGCTTTATT+CGG	0.342818	2:+15887086	MsaT007265.1:CDS
AACACCATACTTTATAAAGA+GGG	0.583291	2:-15886399	None:intergenic
AAGAACAATTTGAAGATGGT+TGG	0.449713	2:+15886372	MsaT007265.1:CDS
AAGAAGTTTGGTACAAGGGG+AGG	0.610658	2:+15885833	MsaT007265.1:CDS
AAGATGTTGTAGAAGAAAAG+CGG	0.551004	2:+15886600	MsaT007265.1:CDS
AAGGTTAGGACTTAAGAATG+TGG	0.679784	2:+15885563	MsaT007265.1:CDS
AATAGTAGGAGTATAAAGCT+TGG	0.523378	2:-15886708	None:intergenic
AATGGCAAAAGCGTTAGCCG+AGG	0.691172	2:+15886214	MsaT007265.1:CDS
ACAAATTGTGAAGCAAGGTT+AGG	0.474466	2:+15885549	MsaT007265.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	15885320	15887938	15885320	ID=MsaG007265
Chr2	mRNA	15885320	15887938	15885320	ID=MsaT007265.1;Parent=MsaG007265
Chr2	exon	15885320	15885401	15885320	ID=MsaT007265.1.exon1;Parent=MsaT007265.1
Chr2	CDS	15885320	15885401	15885320	ID=cds.MsaT007265.1;Parent=MsaT007265.1
Chr2	exon	15885442	15886052	15885442	ID=MsaT007265.1.exon2;Parent=MsaT007265.1
Chr2	CDS	15885442	15886052	15885442	ID=cds.MsaT007265.1;Parent=MsaT007265.1
Chr2	exon	15886131	15887187	15886131	ID=MsaT007265.1.exon3;Parent=MsaT007265.1
Chr2	CDS	15886131	15887187	15886131	ID=cds.MsaT007265.1;Parent=MsaT007265.1
Chr2	exon	15887760	15887812	15887760	ID=MsaT007265.1.exon4;Parent=MsaT007265.1
Chr2	CDS	15887760	15887812	15887760	ID=cds.MsaT007265.1;Parent=MsaT007265.1
Chr2	exon	15887885	15887938	15887885	ID=MsaT007265.1.exon5;Parent=MsaT007265.1
Chr2	CDS	15887885	15887938	15887885	ID=cds.MsaT007265.1;Parent=MsaT007265.1

Gene Sequence

>MsaT007265.1

ATGAATGAAGATTGGAAGCCAAAAGTTGATATGGTTTTCGGTAGCTTTGAAGATCCTTGGGAGTTCTGGAAAACTTACGGTGAAAAAGGATGGTTGATTTCTTCTTGTAGGTTTGTTTGCTGCAAAGAAGGCATACGAAAGCCAGACAAGCGAGATCATAAAACAAAGAATCCAAGACTAGAGACCAGAACAAATTGTGAAGCAAGGTTAGGACTTAAGAATGTGGATGGAAAATTGATGGTGCATGATTTTGTGGAGGACCACAACCACGAGTTACATTTGCCAGAAACAACTCATATGTTGTCTTCTCAACGAAAGATTTCTGAAATTCAATGTCAACAAATTGAACTAGCTGATAGTGCCGGTGTACAACAAAGGAAATCGTTTGATTTACTGAGTAAAGAAGTAGGAGGCAGAACTAACTTGAGTTTTATTTGTCTTGATCAAAAGAATTATCTTCGAAAAAAAAGAGAAAGAAGTTTGGTACAAGGGGAGGCTGGCTATTTACTGCAATATGGTGATCAGCTAGATATTGAAGATCCAACTTTCTACCATGCTTATCAGCTAGATATTGAAGATCAGATCACCAATGTGTTTTGGGCAGACGCTAGGATGTTGATTGATTACAGTTATTTTGGTGATGTTGTTTCTCTTGATTCAACATATTGCACAAATAGTTCACACAGACCACTATCATATGAGTGGCTCTTTGAGACATTTCTAGAAGCACATAAGCAGAAAATGCCTCAAACAGTTTTTACTGATCAAGACAAATCAATGGCAAAAGCGTTAGCCGAGGTTATGCCCGGAGCTTACCATGGTTTATGTACGTGGCACTTGATGCAAAATGGAATTAAACACTTAGGAAATTTAATGAAGGGGGAATCTTATTTTCTTACTGACTTTAAGAAATGCATGTATGGTTATGAAGATGAAGAACAATTTGAAGATGGTTGGACATCCCTCTTTATAAAGTATGGTGTTCAGAAAAATGATTGGTTGCAAAGAATGTACAGTATAAAGGAGAAATGGGCATCTTGTTACATGAAGAAGACTTTGACATTAGGGATGCGAAGCACTCAACATAGTGAAAGCGTGAATGCAGATATTAAAAATTTTATGAGTAAGGACTTGGATTTAATTAAATTTTTTGAGCGTTTTGAAGATGTTGTAGAAGAAAAGCGGTATAAAGAATTGAAGTGTGAATTTGAAGCACGCCAAAAAATTCCAAGACTGAAGAACTCGTATTCTGATATTTTGCAACAAGTGTCCAAGCTTTATACTCCTACTATTTTTGACTTATTCCAACGTGAGTATGAGTTGTTTGAAGCATGCTTTGTGAAAAGCATGGACATACAAACATCATCATCTACTTATGTTATTGCAAAGAAAAGGAATATGGGAGAATGGCAAGTGACCTTCGATTTGGAAAAGAATACAATTTGTTGCTCTTGTCGTAAATTTGAGAGCTTTGGCATACTTTGTTGTCATTGCTTAAAAGTCTTCATTCATATGGACGTTACTTCAGTGCCTGAGCCTTATATTTTAAAGAGGTGGACAAAGATATCAAGAAGTAGAGCTTCACAAACTATTGGTGTTAGTCATGTTGTAGAAGACTTGGATTTATCTCCAGCACAATGTTATAAGGAAATTTGTCCCCGCTTTATTCGGATCGTCACGAGGAAGGATGTAGAAGTCCAGAAGCTGTCGAGTTTCTTAAGGAAGTTGCTGATGAATTGGATGAGCAAATACGATGGAACATCTAGTCAATTTGGTGTCACTAGTTTTACTAGCTTATTGATGGAGCAACTTGATGATGGTACCAGAGACTTGAATGGAGGCTGTAGTTGTCTTTGA

Protein sequence

>MsaT007265.1

MNEDWKPKVDMVFGSFEDPWEFWKTYGEKGWLISSCRFVCCKEGIRKPDKRDHKTKNPRLETRTNCEARLGLKNVDGKLMVHDFVEDHNHELHLPETTHMLSSQRKISEIQCQQIELADSAGVQQRKSFDLLSKEVGGRTNLSFICLDQKNYLRKKRERSLVQGEAGYLLQYGDQLDIEDPTFYHAYQLDIEDQITNVFWADARMLIDYSYFGDVVSLDSTYCTNSSHRPLSYEWLFETFLEAHKQKMPQTVFTDQDKSMAKALAEVMPGAYHGLCTWHLMQNGIKHLGNLMKGESYFLTDFKKCMYGYEDEEQFEDGWTSLFIKYGVQKNDWLQRMYSIKEKWASCYMKKTLTLGMRSTQHSESVNADIKNFMSKDLDLIKFFERFEDVVEEKRYKELKCEFEARQKIPRLKNSYSDILQQVSKLYTPTIFDLFQREYELFEACFVKSMDIQTSSSTYVIAKKRNMGEWQVTFDLEKNTICCSCRKFESFGILCCHCLKVFIHMDVTSVPEPYILKRWTKISRSRASQTIGVSHVVEDLDLSPAQCYKEICPRFIRIVTRKDVEVQKLSSFLRKLLMNWMSKYDGTSSQFGVTSFTSLLMEQLDDGTRDLNGGCSCL*