AlfalfaGEDB | MsaG007315

M. sativa ssp. caerulea / MsaG007315

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040034 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007315	XP_024631664.1	97.345	113	2	1	1	112	1	113	9.33e-65	223

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007315	sp\|F4HY56\|RLT1_ARATH	71.795	78	18	1	33	106	33	110	1.20e-28	111

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007315	tr\|A2Q504\|A2Q504_MEDTR	97.345	113	2	1	1	112	1	113	4.46e-65	223

TFs/TRs:

Gene ID	Type	Classification
MsaG007315	TF	HB-other

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000107	MsaG007315	0.801094	1.773685e-48	2.458004e-46
MsaG000419	MsaG007315	0.819509	1.956635e-52	4.247837e-50
MsaG002978	MsaG007315	0.805450	2.244909e-49	3.439153e-47
MsaG004014	MsaG007315	0.838428	5.321322e-57	1.977652e-54
MsaG004092	MsaG007315	0.811300	1.286278e-50	2.267458e-48
MsaG004112	MsaG007315	0.800921	1.923118e-48	2.654712e-46
MsaG004424	MsaG007315	0.821407	7.212174e-53	1.646368e-50
MsaG004986	MsaG007315	0.805651	2.038325e-49	3.137370e-47
MsaG005189	MsaG007315	0.812281	7.885643e-51	1.423974e-48
MsaG005239	MsaG007315	0.811079	1.435677e-50	2.517145e-48
MsaG005329	MsaG007315	0.808744	4.540283e-50	7.522578e-48
MsaG005406	MsaG007315	0.830894	4.090254e-55	1.214427e-52
MsaG005702	MsaG007315	0.808719	4.596829e-50	7.611667e-48
MsaG005886	MsaG007315	0.832509	1.642728e-55	5.111853e-53
MsaG005984	MsaG007315	0.818295	3.683701e-52	7.747154e-50
MsaG006610	MsaG007315	0.826711	4.161269e-54	1.097623e-51
MsaG006855	MsaG007315	0.812030	8.938754e-51	1.604204e-48
MsaG007241	MsaG007315	0.824687	1.249832e-53	3.117100e-51
MsaG007315	MsaG007335	0.804615	3.348640e-49	5.031509e-47
MsaG007315	MsaG007354	0.825406	8.471352e-54	2.154840e-51
MsaG007315	MsaG008220	0.801329	1.588588e-48	2.213294e-46
MsaG007315	MsaG008495	0.800859	1.979852e-48	2.729272e-46
MsaG007315	MsaG008634	0.839294	3.184830e-57	1.215996e-54
MsaG007315	MsaG009603	0.813217	4.929850e-51	9.112706e-49
MsaG007315	MsaG010104	0.839703	2.495912e-57	9.653135e-55
MsaG007315	MsaG010365	0.818630	3.094690e-52	6.565579e-50
MsaG007315	MsaG010860	0.817399	5.855356e-52	1.203379e-49
MsaG007315	MsaG011298	0.832521	1.631315e-55	5.078075e-53
MsaG007315	MsaG012489	0.814906	2.098867e-51	4.047691e-49
MsaG007315	MsaG015018	0.812530	6.958991e-51	1.264512e-48
MsaG007315	MsaG017057	0.821662	6.302967e-53	1.448608e-50
MsaG007315	MsaG017303	0.812075	8.739593e-51	1.570149e-48
MsaG007315	MsaG017286	0.824808	1.170522e-53	2.929038e-51
MsaG007315	MsaG017412	0.819488	1.979176e-52	4.294379e-50
MsaG007315	MsaG018229	0.813123	5.167458e-51	9.529447e-49
MsaG007315	MsaG018489	0.808765	4.495050e-50	7.451058e-48
MsaG007315	MsaG018786	0.807903	6.849433e-50	1.112085e-47
MsaG007315	MsaG018975	0.815929	1.246043e-51	2.466043e-49
MsaG007315	MsaG019308	0.839515	2.792364e-57	1.073552e-54
MsaG007315	MsaG019935	0.801643	1.370617e-48	1.923271e-46
MsaG007315	MsaG020245	0.812651	6.551642e-51	1.194017e-48
MsaG007315	MsaG020288	0.844817	1.119460e-58	5.099094e-56
MsaG007315	MsaG020467	0.816128	1.125246e-51	2.238303e-49
MsaG007315	MsaG020652	0.805437	2.258474e-49	3.458893e-47
MsaG007315	MsaG021022	0.811110	1.413351e-50	2.479886e-48
MsaG007315	MsaG022284	0.828774	1.335615e-54	3.732420e-52
MsaG007315	MsaG025289	0.827808	2.278291e-54	6.196868e-52
MsaG007315	MsaG026022	0.820885	9.502158e-53	2.139381e-50
MsaG007315	MsaG026192	0.817334	6.055782e-52	1.242480e-49
MsaG007315	MsaG026849	0.801604	1.395528e-48	1.956513e-46
MsaG007315	MsaG026831	0.804220	4.044452e-49	6.021907e-47
MsaG007315	MsaG026987	0.836707	1.462878e-56	5.157769e-54
MsaG007315	MsaG027505	0.816431	9.634889e-52	1.931349e-49
MsaG007315	MsaG028109	0.800190	2.705221e-48	3.673259e-46
MsaG007315	MsaG029093	0.803134	6.779813e-49	9.843814e-47
MsaG007315	MsaG029422	0.814427	2.675903e-51	5.098781e-49
MsaG007315	MsaG033593	0.806016	1.709578e-49	2.653957e-47
MsaG007315	MsaG034977	0.812636	6.598676e-51	1.202166e-48
MsaG007315	MsaG035151	0.805600	2.088080e-49	3.210103e-47
MsaG007315	MsaG035198	0.850870	2.449308e-60	1.367888e-57
MsaG007315	MsaG035743	0.801557	1.427145e-48	1.998650e-46
MsaG007315	MsaG042000	0.817586	5.317098e-52	1.097994e-49
MsaG007315	MsaG042579	0.819333	2.145411e-52	4.636462e-50
MsaG007315	MsaG043788	0.814641	2.401024e-51	4.599444e-49
MsaG007315	MsaG044278	0.832157	2.005393e-55	6.177172e-53
MsaG007315	MsaG044477	0.802416	9.523351e-49	1.360126e-46
MsaG007315	MsaG044957	0.815474	1.571789e-51	3.075000e-49
MsaG007315	MsaG045251	0.828918	1.233262e-54	3.460404e-52
MsaG007315	MsaG045548	0.815339	1.683664e-51	3.282748e-49
MsaG007315	MsaG045568	0.821693	6.201403e-53	1.426437e-50
MsaG007315	MsaG045767	0.815963	1.224256e-51	2.425089e-49
MsaG007315	MsaG045820	0.805864	1.839521e-49	2.845537e-47
MsaG007315	MsaG046027	0.854972	1.665883e-61	1.075065e-58
MsaG007315	MsaG046498	0.805728	1.963618e-49	3.027852e-47
MsaG007315	MsaG046507	0.848424	1.171368e-59	6.016303e-57
MsaG007315	MsaG047011	0.803991	4.511833e-49	6.681969e-47
MsaG007315	MsaG004665	0.812698	6.397176e-51	1.167286e-48
MsaG007315	MsaG001950	0.824737	1.216650e-53	3.038474e-51
MsaG007315	MsaG009513	0.800297	2.573520e-48	3.502914e-46
MsaG007315	MsaG012946	0.817316	6.112508e-52	1.253559e-49
MsaG007315	MsaG011874	0.836677	1.488445e-56	5.242968e-54
MsaG007315	MsaG013252	0.835618	2.756780e-56	9.406730e-54
MsaG007315	MsaG019605	0.841173	1.034093e-57	4.188887e-55
MsaG007315	MsaG019592	0.803218	6.514994e-49	9.477613e-47
MsaG007315	MsaG020277	0.850244	3.664274e-60	2.002489e-57
MsaG007315	MsaG019828	0.862146	1.232730e-63	1.040431e-60
MsaG007315	MsaG028121	0.806879	1.126371e-49	1.784643e-47
MsaG007315	MsaG030007	0.812713	6.349193e-51	1.158942e-48
MsaG007315	MsaG034262	0.838898	4.029150e-57	1.519604e-54
MsaG007315	MsaG030563	0.811822	9.917141e-51	1.770764e-48
MsaG007315	MsaG036471	0.834683	4.734875e-56	1.571103e-53
MsaG007315	MsaG036661	0.803296	6.276930e-49	9.147831e-47
MsaG007315	MsaG037513	0.802208	1.050245e-48	1.492791e-46
MsaG007315	MsaG036473	0.824979	1.067143e-53	2.682892e-51
MsaG007315	MsaG037051	0.801330	1.587636e-48	2.212032e-46
MsaG007315	MsaG035795	0.807598	7.943817e-50	1.280297e-47
MsaG007315	MsaG041852	0.816292	1.034792e-51	2.067000e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007315	MtrunA17_Chr2g0282771	97.345	113	2	1	1	112	1	113	8.58e-69	223
MsaG007315	MtrunA17_Chr4g0046591	74.699	83	19	1	26	108	18	98	3.40e-35	127
MsaG007315	MtrunA17_Chr4g0040511	69.841	63	19	0	36	98	16	78	3.49e-24	95.9
MsaG007315	MtrunA17_Chr5g0441991	51.724	58	28	0	41	98	20	77	1.71e-15	70.9
MsaG007315	MtrunA17_Chr3g0094681	50.909	55	27	0	42	96	21	75	2.69e-14	67.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007315	AT1G28420.1	71.795	78	18	1	33	106	33	110	1.22e-29	111
MsaG007315	AT5G44180.2	64.286	70	24	1	37	105	15	84	1.38e-22	91.7
MsaG007315	AT5G44180.3	64.286	70	24	1	37	105	15	84	1.87e-22	91.3
MsaG007315	AT5G44180.1	64.286	70	24	1	37	105	15	84	1.87e-22	91.3
MsaG007315	AT4G03250.1	47.368	57	30	0	42	98	22	78	5.59e-14	67.0

Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCGCCACCTTTGCTGGATTC+TGG	0.216776	2:+16432509	MsaT007315.1:CDS
GCGAAAGGCGCCACCTTTGC+TGG	0.311681	2:+16432502	MsaT007315.1:CDS
GCCTTTCGCGCCTTCTTAAC+CGG	0.347806	2:-16432488	None:intergenic
AACAACAAGATTATGAGTTC+AGG	0.378782	2:+16432166	MsaT007315.1:CDS
TCAAGCATTTCAAGCTGAAA+AGG	0.383787	2:-16432226	None:intergenic
CAAGCATTTCAAGCTGAAAA+GGG	0.399966	2:-16432225	None:intergenic
GTCTGAGAAGTTGGGGTTGT+CGG	0.401007	2:+16432409	MsaT007315.1:CDS
GATAGAGCTGTCTGAGAAGT+TGG	0.402849	2:+16432400	MsaT007315.1:CDS
CCTTCTTGTCTTTCAACCTC+CGG	0.426074	2:-16432460	None:intergenic
ATAGAGCTGTCTGAGAAGTT+GGG	0.440544	2:+16432401	MsaT007315.1:CDS
GAAAGACAAGAAGGAGTTAC+CGG	0.460260	2:+16432469	MsaT007315.1:CDS
AATTCCCAGAAGGGTGATGA+TGG	0.465278	2:+16432106	MsaT007315.1:CDS
TTCAGTGGAGACATATCCTT+CGG	0.476034	2:+16432367	MsaT007315.1:intron
CCGGATCCATATTCATTACA+AGG	0.514192	2:-16432534	None:intergenic
GAAGGAGTTACCGGTTAAGA+AGG	0.522295	2:+16432478	MsaT007315.1:CDS
ATTCCCAGAAGGGTGATGAT+GGG	0.552822	2:+16432107	MsaT007315.1:CDS
AGTAATGAAAATTTCAACAA+TGG	0.570399	2:+16432139	MsaT007315.1:CDS
TCTATCCTTGTTGTCTCCGA+AGG	0.573578	2:-16432383	None:intergenic
ACCGGTTAAGAAGGCGCGAA+AGG	0.574449	2:+16432487	MsaT007315.1:CDS
TTCCCAGAAGGGTGATGATG+GGG	0.582040	2:+16432108	MsaT007315.1:CDS
GCAGAGAATAATTCCCAGAA+GGG	0.596544	2:+16432097	MsaT007315.1:CDS
GCTCCAGAATCCAGCAAAGG+TGG	0.596648	2:-16432512	None:intergenic
CGGATCGACAGTTACAGATG+TGG	0.596696	2:+16432429	MsaT007315.1:CDS
TAGAGCTGTCTGAGAAGTTG+GGG	0.600237	2:+16432402	MsaT007315.1:CDS
AAGCATTTCAAGCTGAAAAG+GGG	0.602993	2:-16432224	None:intergenic
AGCAGAGAATAATTCCCAGA+AGG	0.615412	2:+16432096	MsaT007315.1:CDS
CATATCCTTCGGAGACAACA+AGG	0.621717	2:+16432378	MsaT007315.1:CDS
AAGATTATGAGTTCAGGTGA+AGG	0.636764	2:+16432172	MsaT007315.1:CDS
CCGGAGGTTGAAAGACAAGA+AGG	0.646614	2:+16432460	MsaT007315.1:CDS
TCCCAGAAGGGTGATGATGG+GGG	0.649850	2:+16432109	MsaT007315.1:CDS
AAGGCTCCAGAATCCAGCAA+AGG	0.677006	2:-16432515	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	16432085	16432541	16432085	ID=MsaG007315
Chr2	mRNA	16432085	16432541	16432085	ID=MsaT007315.1;Parent=MsaG007315
Chr2	exon	16432085	16432262	16432085	ID=MsaT007315.1.exon1;Parent=MsaT007315.1
Chr2	CDS	16432085	16432262	16432085	ID=cds.MsaT007315.1;Parent=MsaT007315.1
Chr2	exon	16432372	16432541	16432372	ID=MsaT007315.1.exon2;Parent=MsaT007315.1
Chr2	CDS	16432372	16432541	16432372	ID=cds.MsaT007315.1;Parent=MsaT007315.1

Gene Sequence	>MsaT007315.1 ATGGAAGCTGAAGCAGAGAATAATTCCCAGAAGGGTGATGATGGGGGTGAAAATAGTAATGAAAATTTCAACAATGGAAGTAACAACAAGATTATGAGTTCAGGTGAAGGTCAAAGCAAACCTAAGAGACAAATGAAAACCCCTTTTCAGCTTGAAATGCTTGAGAAAGCTTATGCTTTGGAGACATATCCTTCGGAGACAACAAGGATAGAGCTGTCTGAGAAGTTGGGGTTGTCGGATCGACAGTTACAGATGTGGTTTTGTCACCGGAGGTTGAAAGACAAGAAGGAGTTACCGGTTAAGAAGGCGCGAAAGGCGCCACCTTTGCTGGATTCTGGAGCCTTGTAA
Protein sequence	>MsaT007315.1 MEAEAENNSQKGDDGGENSNENFNNGSNNKIMSSGEGQSKPKRQMKTPFQLEMLEKAYALETYPSETTRIELSEKLGLSDRQLQMWFCHRRLKDKKELPVKKARKAPPLLDSGAL*