AlfalfaGEDB | MsaG007376

M. sativa ssp. caerulea / MsaG007376

KEGG: K14404
GO: GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010363 GO:0010467 GO:0010468 GO:0010646 GO:0010941 GO:0010942 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0023051 GO:0031123 GO:0031124 GO:0031323 GO:0031347 GO:0031349 GO:0031440 GO:0031974 GO:0031981 GO:0032991 GO:0034052 GO:0034641 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050684 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1900363 GO:1901360 GO:1901363 GO:1903311 GO:2000031 GO:2001023 GO:2001038
PFAM: PF04146.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007376	XP_013463003.1	97.804	683	15	0	1	683	1	683	0.0	1384

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007376	sp\|A9LNK9\|CPSF_ARATH	61.752	685	203	16	1	680	1	631	0.0	665

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007376	tr\|A0A072V6R5\|A0A072V6R5_MEDTR	97.804	683	15	0	1	683	1	683	0.0	1384

TFs/TRs:

Gene ID	Type	Classification
MsaG007376	TF	C3H

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001963	MsaG007376	0.823374	2.532166e-53	6.094230e-51
MsaG007042	MsaG007376	0.823856	1.955843e-53	4.768829e-51
MsaG007376	MsaG010305	0.801880	1.225843e-48	1.729448e-46
MsaG007376	MsaG010757	0.804560	3.439186e-49	5.161073e-47
MsaG007376	MsaG010799	0.812253	7.993784e-51	1.442508e-48
MsaG007376	MsaG014655	0.800828	2.008115e-48	2.766320e-46
MsaG007376	MsaG021165	0.833678	8.432847e-56	2.715789e-53
MsaG007376	MsaG021264	0.810688	1.742477e-50	3.025938e-48
MsaG007376	MsaG023997	0.804138	4.205779e-49	6.250158e-47
MsaG007376	MsaG028632	0.833880	7.511984e-56	2.433319e-53
MsaG007376	MsaG033897	0.803723	5.124908e-49	7.543143e-47
MsaG007376	MsaG041735	0.821165	8.198634e-53	1.859687e-50
MsaG007376	MsaG041833	0.800191	2.704453e-48	3.672298e-46
MsaG007376	MsaG006540	0.800699	2.133827e-48	2.931020e-46
MsaG007376	MsaG008765	0.800104	2.816024e-48	3.816383e-46
MsaG007376	MsaG019826	0.820034	1.486819e-52	3.273062e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007376	MtrunA17_Chr2g0292081	97.804	683	15	0	1	683	1	683	0.0	1384
MsaG007376	MtrunA17_Chr7g0253191	29.710	138	91	2	259	394	431	564	1.89e-12	70.5
MsaG007376	MtrunA17_Chr4g0000071	26.316	152	101	3	259	403	395	542	2.74e-12	70.1
MsaG007376	MtrunA17_Chr8g0380431	25.949	158	107	2	231	382	393	546	3.03e-12	69.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007376	AT1G30460.1	61.752	685	203	16	1	680	1	631	0.0	665
MsaG007376	AT1G30460.2	67.225	418	105	8	1	413	1	391	4.69e-180	518
MsaG007376	AT1G30460.3	56.767	266	83	8	1	261	1	239	1.63e-75	243
MsaG007376	AT4G11970.2	50.667	150	70	3	246	394	61	207	4.60e-35	137
MsaG007376	AT4G11970.5	50.667	150	70	3	246	394	61	207	5.25e-35	137
MsaG007376	AT4G11970.3	50.667	150	70	3	246	394	61	207	1.48e-34	136
MsaG007376	AT4G11970.1	50.667	150	70	3	246	394	61	207	2.90e-33	133
MsaG007376	AT4G11970.4	50.667	150	70	3	246	394	61	207	2.90e-33	133
MsaG007376	AT4G11970.6	52.294	109	50	2	287	394	2	109	9.99e-23	99.4
MsaG007376	AT4G11970.7	52.294	109	50	2	287	394	2	109	1.14e-22	98.6
MsaG007376	AT1G55500.4	27.742	155	102	2	246	394	401	551	8.77e-13	72.0
MsaG007376	AT1G55500.6	27.742	155	102	2	246	394	358	508	8.99e-13	72.0
MsaG007376	AT1G55500.1	27.742	155	102	2	246	394	345	495	9.40e-13	71.6
MsaG007376	AT1G55500.5	27.742	155	102	2	246	394	401	551	9.41e-13	72.0
MsaG007376	AT1G55500.3	27.742	155	102	2	246	394	388	538	9.88e-13	71.6
MsaG007376	AT1G55500.2	27.742	155	102	2	246	394	401	551	9.91e-13	71.6
MsaG007376	AT1G27960.1	29.412	153	95	4	259	403	330	477	4.73e-12	69.3
MsaG007376	AT1G27960.3	29.412	153	95	4	259	403	256	403	7.34e-12	68.6
MsaG007376	AT5G61020.2	23.301	206	144	4	197	394	197	396	8.96e-12	68.6
MsaG007376	AT5G61020.1	23.301	206	144	4	197	394	199	398	1.05e-11	68.2
MsaG007376	AT3G13460.4	26.452	155	104	2	246	394	428	578	1.17e-11	68.6
MsaG007376	AT3G13460.1	26.452	155	104	2	246	394	429	579	1.17e-11	68.6
MsaG007376	AT3G13460.2	26.452	155	104	2	246	394	426	576	1.29e-11	68.6

Find 218 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCTAGGTTCGGTGGTGATTT+TGG	0.093023	2:+17214943	MsaT007376.1:CDS
TCTTCAAATGGGACAATATC+TGG	0.215787	2:-17214649	None:intergenic
AGAATTGGTGGTTCTGTTGC+TGG	0.242654	2:+17211240	MsaT007376.1:CDS
GGCATGGGTCCCCGAGGTTT+TGG	0.279783	2:+17214910	MsaT007376.1:CDS
TCTTCTTCATTGTCTTCAAA+TGG	0.286902	2:-17214661	None:intergenic
CGGGGTGGAGACGGCGGCGG+TGG	0.296415	2:-17205207	None:intergenic
ATGTTTCCCGGTGGTGGATT+CGG	0.296653	2:+17215015	MsaT007376.1:CDS
CCGTCGACCGGGAGCATTAC+CGG	0.300595	2:-17205306	None:intergenic
TGTCTGTACAACAAGGAGTA+TGG	0.310359	2:+17209776	MsaT007376.1:CDS
TGATGTTCGATTGGCTTGAT+TGG	0.314369	2:-17208703	None:intergenic
ACCGGTAAGTTCTCATTGTA+TGG	0.319343	2:-17212632	None:intergenic
TGCTTCTGCAGGTACAAGTT+AGG	0.323400	2:+17208354	MsaT007376.1:intron
TGTTTCCCGGTGGTGGATTC+GGG	0.323535	2:+17215016	MsaT007376.1:CDS
GCTCATGGAACGGCACATTA+TGG	0.324684	2:+17211279	MsaT007376.1:CDS
GGTGGAGACGGCGGCGGTGG+AGG	0.346062	2:-17205204	None:intergenic
CTCCCGGTCGACGGAGCTTC+CGG	0.349933	2:+17205315	MsaT007376.1:CDS
AGCAACAGAACCACCAATTC+TGG	0.361324	2:-17211238	None:intergenic
CTACCACCTCTTGGTGCGTT+TGG	0.363298	2:-17215093	None:intergenic
TTTCCTGACTCTGCAACTAA+TGG	0.365592	2:-17208600	None:intergenic
CATTGTATGGATTTCTCAAA+TGG	0.375064	2:-17212619	None:intergenic
GTTGAACTTGTTGCTGCTGC+TGG	0.379641	2:-17208626	None:intergenic
GAATTGGTGGTTCTGTTGCT+GGG	0.384527	2:+17211241	MsaT007376.1:CDS
TGAGCCAGATAGTGAACTTA+TGG	0.387028	2:+17214204	MsaT007376.1:CDS
CAACCGTACTCGACATTTCC+AGG	0.391792	2:+17209876	MsaT007376.1:CDS
TGTGGTGGAGGTGGAGGTGG+TGG	0.398389	2:-17215141	None:intergenic
GAGAGCTTTGGTCAAGCTGC+AGG	0.403362	2:+17214712	MsaT007376.1:CDS
TCAAACCCTGGTATGTTTCC+CGG	0.404695	2:+17215003	MsaT007376.1:CDS
CCTCTTGGTGCGTTTGGACC+TGG	0.405425	2:-17215087	None:intergenic
CTTCTTCATTGTCTTCAAAT+GGG	0.407303	2:-17214660	None:intergenic
TATCGACAATCAGGCCCATT+AGG	0.408920	2:-17208384	None:intergenic
CCTGCTGGACCCGATGGTTT+CGG	0.409876	2:+17214871	MsaT007376.1:CDS
ATGGGCCTGATTGTCGATAT+AGG	0.411252	2:+17208388	MsaT007376.1:CDS
AAGCGAGAATGCCGATTTGT+CGG	0.414926	2:+17205414	MsaT007376.1:CDS
GCAGATAAGTAGAGATTGTC+AGG	0.416631	2:+17214135	MsaT007376.1:intron
CAAGGAAGAGGTAGGGGCAG+AGG	0.419654	2:+17214745	MsaT007376.1:CDS
AAGGGAGTGAATCCAGATAA+TGG	0.426746	2:+17214616	MsaT007376.1:CDS
TGCCAACTGCTCACCGATAG+AGG	0.426963	2:-17214167	None:intergenic
TTGCCGGAAGCTCCGTCGAC+CGG	0.427292	2:-17205318	None:intergenic
GCATGCCTATATCGACAATC+AGG	0.427943	2:-17208393	None:intergenic
TCTTGACTCTTACCCTGATC+TGG	0.427989	2:-17215231	None:intergenic
CGGAATGATAGGTATAGTTC+AGG	0.433860	2:+17215207	MsaT007376.1:CDS
CTAGATATTCCTTGAGGTAA+AGG	0.434257	2:-17208729	None:intergenic
GATGAAGAGGAGGAGAGCTT+TGG	0.434723	2:+17214700	MsaT007376.1:CDS
CTCGGAACATCATGCCAGCT+GGG	0.436761	2:-17214972	None:intergenic
GGATTATCCTACGGACCTGC+TGG	0.438065	2:+17214856	MsaT007376.1:CDS
CCTGGTATGTTTCCCGGTGG+TGG	0.438081	2:+17215009	MsaT007376.1:CDS
CATACCATAAGTTCACTATC+TGG	0.440113	2:-17214208	None:intergenic
TATAGTTAGAACCCCTTTGT+TGG	0.441127	2:-17208509	None:intergenic
CTACCTCTTCCTTGAACAGC+TGG	0.443773	2:-17214736	None:intergenic
CAGGCGCAAAATCTTGCTAA+TGG	0.445483	2:+17208675	MsaT007376.1:CDS
GGTCCATACGGTCCTAGGTT+CGG	0.446695	2:+17214931	MsaT007376.1:CDS
CCTCGGAACATCATGCCAGC+TGG	0.447772	2:-17214973	None:intergenic
GATAATCCATCGCCCATCAT+AGG	0.448656	2:-17214841	None:intergenic
TTTCTCTGTTAAGTGGTTGA+AGG	0.452217	2:+17211308	MsaT007376.1:CDS
TGAAGAACCTCTTCAATTGG+AGG	0.457703	2:-17208435	None:intergenic
CTCCACCACAAAATATAAAC+CGG	0.459013	2:+17215154	MsaT007376.1:CDS
GATGTTCGATTGGCTTGATT+GGG	0.460125	2:-17208702	None:intergenic
GTATAGTTCAGGACCAGATC+AGG	0.461811	2:+17215218	MsaT007376.1:CDS
GACCAAGTGATCGGAATGAT+AGG	0.463237	2:+17215196	MsaT007376.1:CDS
GACGTAATTTCTCTGTTAAG+TGG	0.464059	2:+17211301	MsaT007376.1:CDS
GTATGGAGAATGTCGTGAAC+AGG	0.464320	2:+17205448	MsaT007376.1:CDS
AGTCGCGGTTGCGGCTCCAT+TGG	0.465448	2:-17205261	None:intergenic
TCACAAGTTTAACCAACAAA+GGG	0.465473	2:+17208497	MsaT007376.1:CDS
GATCGGGGTGGAGACGGCGG+CGG	0.465703	2:-17205210	None:intergenic
CTTTACCTCAAGGAATATCT+AGG	0.467981	2:+17208730	MsaT007376.1:CDS
CCACCACCGGGAAACATACC+AGG	0.468279	2:-17215009	None:intergenic
CCTCACATGCATCTTGGGCG+TGG	0.469309	2:+17214784	MsaT007376.1:CDS
GCTGCAGGGCCAGCTGTTCA+AGG	0.469876	2:+17214727	MsaT007376.1:CDS
AAGTAGAGATTGTCAGGAGC+TGG	0.471206	2:+17214141	MsaT007376.1:CDS
AGACAATGAAGAAGAGGAAG+AGG	0.471242	2:+17214669	MsaT007376.1:CDS
TTGACTGGCCTACCACCTCT+TGG	0.471572	2:-17215102	None:intergenic
CGGTGTGTCGTCACTGGCTA+AGG	0.473431	2:+17205342	MsaT007376.1:CDS
CGAGAAGAAGAGAAAGCAAA+GGG	0.473546	2:+17214598	MsaT007376.1:CDS
AAACCATTAGTTGCAGAGTC+AGG	0.474307	2:+17208597	MsaT007376.1:CDS
AACAGATGGAGTCGCGGTTG+CGG	0.476724	2:-17205270	None:intergenic
AGGAATCGGATTGGACGATC+GGG	0.476823	2:-17205226	None:intergenic
AATTGTAAGAATATAAATGT+TGG	0.477942	2:-17208464	None:intergenic
TCAATTGGAGGAGGAGGTCC+AGG	0.478308	2:-17208423	None:intergenic
AGTGACGACACACCGTTTGC+CGG	0.482207	2:-17205334	None:intergenic
TCCATACAATGAGAACTTAC+CGG	0.482376	2:+17212631	MsaT007376.1:CDS
ACCTCTTCAATTGGAGGAGG+AGG	0.484094	2:-17208429	None:intergenic
CCCATAAAAGGACCGCGTCC+AGG	0.488496	2:-17215051	None:intergenic
TGATACTGCATGTCATCATC+AGG	0.498554	2:-17215276	None:intergenic
GCAGCAAGTCAGCCAGAACC+AGG	0.499588	2:+17208656	MsaT007376.1:CDS
TTAGTTGCAGAGTCAGGAAA+TGG	0.499921	2:+17208603	MsaT007376.1:CDS
TCGACGGAGCTTCCGGCAAA+CGG	0.501734	2:+17205322	MsaT007376.1:CDS
TTCGATTGGCTTGATTGGGC+TGG	0.502203	2:-17208698	None:intergenic
GAGTTGCAATCGTGAAAACT+TGG	0.502415	2:+17209750	MsaT007376.1:CDS
GGCAAACGGTGTGTCGTCAC+TGG	0.503851	2:+17205336	MsaT007376.1:CDS
GGGCCAGCTGTTCAAGGAAG+AGG	0.506255	2:+17214733	MsaT007376.1:CDS
GGAGGTGATTGCAGTGGCGG+CGG	0.507353	2:-17205186	None:intergenic
TTGGACGATCGGGGTGGAGA+CGG	0.508352	2:-17205216	None:intergenic
AGTCCTCAACTTCGATTTCG+AGG	0.508501	2:+17205142	MsaT007376.1:CDS
CCGAAACCATCGGGTCCAGC+AGG	0.512621	2:-17214871	None:intergenic
TAAAGGAGTTGATGTTCGAT+TGG	0.513355	2:-17208712	None:intergenic
GGGAAACATACCAGGGTTTG+AGG	0.514013	2:-17215001	None:intergenic
GCATACTAATGATGATATCA+AGG	0.514229	2:+17205484	MsaT007376.1:CDS
AGAGGAAGAAAGTGATGAAG+AGG	0.516977	2:+17214687	MsaT007376.1:CDS
GGAAGGTGGTAAGTAGGAAT+CGG	0.518366	2:-17205240	None:intergenic
GGAAGAGGTAGGGGCAGAGG+AGG	0.518803	2:+17214748	MsaT007376.1:CDS
CCGGTAATGCTCCCGGTCGA+CGG	0.519022	2:+17205306	MsaT007376.1:CDS
TTCGGGATGATGATGAATCC+TGG	0.523869	2:+17215033	MsaT007376.1:CDS
TATAGGCATGCAAAATCTCC+TGG	0.524122	2:+17208405	MsaT007376.1:CDS
ACCGTATGGACCAAAACCTC+GGG	0.524155	2:-17214920	None:intergenic
CTCAACTTCGATTTCGAGGG+CGG	0.524533	2:+17205146	MsaT007376.1:CDS
GCGGTTGCGGCTCCATTGGA+AGG	0.525005	2:-17205257	None:intergenic
TAGGAATCGGATTGGACGAT+CGG	0.525623	2:-17205227	None:intergenic
TGCCGGAAGCTCCGTCGACC+GGG	0.526302	2:-17205317	None:intergenic
GTGATTGCAGTGGCGGCGGA+AGG	0.526955	2:-17205182	None:intergenic
GGAAAAGATAATACCTTCAC+CGG	0.531864	2:-17212650	None:intergenic
TTTAATCCTATGATGGGCGA+TGG	0.534666	2:+17214835	MsaT007376.1:CDS
GCAAAGATGACATCCAGAAT+TGG	0.534997	2:+17211225	MsaT007376.1:CDS
CGTCGACCGGGAGCATTACC+GGG	0.535042	2:-17205305	None:intergenic
CTCACAAGTTTAACCAACAA+AGG	0.536291	2:+17208496	MsaT007376.1:CDS
ACGAGAAGAAGAGAAAGCAA+AGG	0.536291	2:+17214597	MsaT007376.1:CDS
TCTGTTGCTGAACATACTCC+CGG	0.537402	2:+17205287	MsaT007376.1:CDS
TCTGCAAACCAAGGTGCGGT+TGG	0.537410	2:+17208573	MsaT007376.1:CDS
AATTGGTGGTTCTGTTGCTG+GGG	0.537847	2:+17211242	MsaT007376.1:CDS
GCTGTTCAAGGAAGAGGTAG+GGG	0.539653	2:+17214739	MsaT007376.1:CDS
GTCTGTACAACAAGGAGTAT+GGG	0.539886	2:+17209777	MsaT007376.1:CDS
CGAGGTCGACCCTCAAACCC+TGG	0.539982	2:+17214991	MsaT007376.1:CDS
CAGCTGTTCAAGGAAGAGGT+AGG	0.542218	2:+17214737	MsaT007376.1:CDS
GGAAGAAAGTGATGAAGAGG+AGG	0.544461	2:+17214690	MsaT007376.1:CDS
ATCGAAGTTGAGGACTCCTT+CGG	0.545071	2:-17205135	None:intergenic
CATCATCCCGAATCCACCAC+CGG	0.546239	2:-17215022	None:intergenic
CCAAAATCACCACCGAACCT+AGG	0.547709	2:-17214943	None:intergenic
ATTTGAAGACAATGAAGAAG+AGG	0.549441	2:+17214663	MsaT007376.1:CDS
TACGGACCTGCTGGACCCGA+TGG	0.549441	2:+17214865	MsaT007376.1:CDS
TCTGGCATACCGAAACCATC+GGG	0.549485	2:-17214880	None:intergenic
TCCTACTTACCACCTTCCAA+TGG	0.551728	2:+17205245	MsaT007376.1:CDS
GGAAACATACCAGGGTTTGA+GGG	0.553214	2:-17215000	None:intergenic
TCCATTGGAAGGTGGTAAGT+AGG	0.553309	2:-17205246	None:intergenic
TACCTATCATTCCGATCACT+TGG	0.553384	2:-17215198	None:intergenic
ACCCTCTATCGGTGAGCAGT+TGG	0.555558	2:+17214165	MsaT007376.1:CDS
TCTCCGTGTCTTGACCGCCT+AGG	0.556999	2:-17215363	None:intergenic
GAAAAGTCTCAGTTTCCTCA+AGG	0.558709	2:+17208543	MsaT007376.1:CDS
AGCTGTTCAAGGAAGAGGTA+GGG	0.558892	2:+17214738	MsaT007376.1:CDS
CACGCCCAAGATGCATGTGA+GGG	0.559255	2:-17214783	None:intergenic
CAATGAGAACTTACCGGTGA+AGG	0.559575	2:+17212637	MsaT007376.1:CDS
AAGACATGCTCAGTCAAAGT+GGG	0.562941	2:+17215250	MsaT007376.1:CDS
GGAAACTGGAAATATGCTCA+TGG	0.564153	2:+17211264	MsaT007376.1:CDS
CAGGAGCTGGAACCCTCTAT+CGG	0.564912	2:+17214154	MsaT007376.1:CDS
GTGGTAAGTAGGAATCGGAT+TGG	0.569036	2:-17205235	None:intergenic
ATCTGGCATACCGAAACCAT+CGG	0.569716	2:-17214881	None:intergenic
GGTGGAGGTGGTGGAAACAT+CGG	0.569998	2:-17215132	None:intergenic
AACATCGGAGGCATATTGAC+TGG	0.571438	2:-17215117	None:intergenic
AAGGAGTATGGGCAACTCAA+AGG	0.574768	2:+17209788	MsaT007376.1:CDS
CCACGCCCAAGATGCATGTG+AGG	0.577024	2:-17214784	None:intergenic
GGTGGAGGTGATTGCAGTGG+CGG	0.577871	2:-17205189	None:intergenic
GTCCTCAACTTCGATTTCGA+GGG	0.578584	2:+17205143	MsaT007376.1:CDS
GAGATCAAAGACCAAGTGAT+CGG	0.578889	2:+17215187	MsaT007376.1:CDS
ATACCTGGAAATGTCGAGTA+CGG	0.579334	2:-17209879	None:intergenic
GACCGTATGGACCAAAACCT+CGG	0.581465	2:-17214921	None:intergenic
AGAACCTCTTCAATTGGAGG+AGG	0.582530	2:-17208432	None:intergenic
ACATCAACTCCTTTACCTCA+AGG	0.583022	2:+17208720	MsaT007376.1:CDS
CATACTCCCGGTAATGCTCC+CGG	0.583758	2:+17205299	MsaT007376.1:CDS
TCGGAACATCATGCCAGCTG+GGG	0.587325	2:-17214971	None:intergenic
TTTGCAGAATTAATTCCTTG+AGG	0.587634	2:-17208558	None:intergenic
ACAAGTCACAACAAGATGAT+CGG	0.589232	2:+17215310	MsaT007376.1:CDS
CAAGACATGCTCAGTCAAAG+TGG	0.589412	2:+17215249	MsaT007376.1:CDS
CCACAAAATATAAACCGGAC+TGG	0.589512	2:+17215159	MsaT007376.1:CDS
GCACCTAGGCGGTCAAGACA+CGG	0.591297	2:+17215360	MsaT007376.1:CDS
CGTGGAGCAAGACCGATCCA+TGG	0.593454	2:+17214802	MsaT007376.1:CDS
GACGATCGGGGTGGAGACGG+CGG	0.596912	2:-17205213	None:intergenic
CTAAGGAGTTTGTGTATGAA+AGG	0.598009	2:+17205359	MsaT007376.1:CDS
TATAGTTCAGGACCAGATCA+GGG	0.598515	2:+17215219	MsaT007376.1:CDS
CGATAGTGAAAGTGAAGATG+AGG	0.599130	2:+17215338	MsaT007376.1:CDS
CGCCCAAGATGCATGTGAGG+GGG	0.601403	2:-17214781	None:intergenic
CGCCCTCGAAATCGAAGTTG+AGG	0.602456	2:-17205145	None:intergenic
GGAGTATGTTCAGCAACAGA+TGG	0.603973	2:-17205284	None:intergenic
ATCTGGCTCAGTATATAGCA+AGG	0.604895	2:-17214191	None:intergenic
CCACCGAACCTAGGACCGTA+TGG	0.605294	2:-17214934	None:intergenic
AGAGCTTTGGTCAAGCTGCA+GGG	0.606033	2:+17214713	MsaT007376.1:CDS
ATGGGCGATGGATTATCCTA+CGG	0.607549	2:+17214847	MsaT007376.1:CDS
TTCCAAATGGAGGATTCCGA+AGG	0.608048	2:+17205119	None:intergenic
ACCTCCTCCTCCAATTGAAG+AGG	0.608458	2:+17208428	MsaT007376.1:CDS
AAATGAAGCATTCGACTCTG+TGG	0.611269	2:+17209828	MsaT007376.1:CDS
ATCATCCCGAATCCACCACC+GGG	0.616028	2:-17215021	None:intergenic
CCAGCTGGCATGATGTTCCG+AGG	0.617820	2:+17214973	MsaT007376.1:CDS
ACGCCCAAGATGCATGTGAG+GGG	0.617863	2:-17214782	None:intergenic
CCATACGGTCCTAGGTTCGG+TGG	0.619801	2:+17214934	MsaT007376.1:CDS
GCCAACTGCTCACCGATAGA+GGG	0.624592	2:-17214166	None:intergenic
GTATGAAAGGTGAAGCGTGT+GGG	0.626726	2:+17205372	MsaT007376.1:CDS
GGAGGTGGTGGAAACATCGG+AGG	0.628646	2:-17215129	None:intergenic
AAGATGACATCCAGAATTGG+TGG	0.629196	2:+17211228	MsaT007376.1:CDS
AGGCGGTCAAGACACGGAGA+GGG	0.630746	2:+17215366	MsaT007376.1:CDS
CGGAACATCATGCCAGCTGG+GGG	0.631408	2:-17214970	None:intergenic
CTGGAAATATGCTCATGGAA+CGG	0.636269	2:+17211269	MsaT007376.1:CDS
AGACATGCTCAGTCAAAGTG+GGG	0.641645	2:+17215251	MsaT007376.1:CDS
ATTGGTGGTTCTGTTGCTGG+GGG	0.642974	2:+17211243	MsaT007376.1:CDS
TAGGCGGTCAAGACACGGAG+AGG	0.643157	2:+17215365	MsaT007376.1:CDS
GGCGGTCAAGACACGGAGAG+GGG	0.643659	2:+17215367	MsaT007376.1:CDS
GGTCCAAACGCACCAAGAGG+TGG	0.645123	2:+17215090	MsaT007376.1:CDS
ATCGGATTGGACGATCGGGG+TGG	0.646967	2:-17205222	None:intergenic
CAAACGCACCAAGAGGTGGT+AGG	0.648402	2:+17215094	MsaT007376.1:CDS
GGAATTAATTCTGCAAACCA+AGG	0.649467	2:+17208564	MsaT007376.1:CDS
GGCGGTGGAGGTGATTGCAG+TGG	0.649508	2:-17205192	None:intergenic
GGAATCGGATTGGACGATCG+GGG	0.649563	2:-17205225	None:intergenic
TAATTCTGCAAACCAAGGTG+CGG	0.649941	2:+17208569	MsaT007376.1:CDS
GTTGCGGCTCCATTGGAAGG+TGG	0.651243	2:-17205254	None:intergenic
CAGGGTTTGAGGGTCGACCT+CGG	0.654624	2:-17214990	None:intergenic
CACAAGTTTAACCAACAAAG+GGG	0.657204	2:+17208498	MsaT007376.1:CDS
ATCGGGTCCAGCAGGTCCGT+AGG	0.658107	2:-17214863	None:intergenic
TTCAGCAACAGATGGAGTCG+CGG	0.661796	2:-17205276	None:intergenic
AAAGTGAAGATGAGGCACCT+AGG	0.663202	2:+17215346	MsaT007376.1:CDS
TGTATGAAAGGTGAAGCGTG+TGG	0.667628	2:+17205371	MsaT007376.1:CDS
GATGACATGCAGTATCAGCA+AGG	0.670720	2:+17215282	MsaT007376.1:CDS
GGGGCAGAGGAGGTATGATG+TGG	0.674845	2:+17214758	MsaT007376.1:CDS
AACCCTGGTATGTTTCCCGG+TGG	0.675845	2:+17215006	MsaT007376.1:CDS
CCAGGTCCAAACGCACCAAG+AGG	0.690365	2:+17215087	MsaT007376.1:CDS
TTGGAGTTGTCTGTACAACA+AGG	0.692074	2:+17209769	MsaT007376.1:CDS
GACATGCTCAGTCAAAGTGG+GGG	0.694693	2:+17215252	MsaT007376.1:CDS
ATGATGATGAATCCTGGACG+CGG	0.695580	2:+17215039	MsaT007376.1:CDS
ACACACCTAGATATTCCTTG+AGG	0.718712	2:-17208735	None:intergenic
GGAGTGAATCCAGATAATGG+AGG	0.727786	2:+17214619	MsaT007376.1:CDS
CACCACCGGGAAACATACCA+GGG	0.732642	2:-17215008	None:intergenic
GTGAAGATGAGGCACCTAGG+CGG	0.740940	2:+17215349	MsaT007376.1:CDS
CCGTATGGACCAAAACCTCG+GGG	0.760395	2:-17214919	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	17205125	17215413	17205125	ID=MsaG007376
Chr2	mRNA	17205125	17215413	17205125	ID=MsaT007376.1;Parent=MsaG007376
Chr2	exon	17205125	17205516	17205125	ID=MsaT007376.1.exon1;Parent=MsaT007376.1
Chr2	CDS	17205125	17205516	17205125	ID=cds.MsaT007376.1;Parent=MsaT007376.1
Chr2	exon	17208365	17208751	17208365	ID=MsaT007376.1.exon2;Parent=MsaT007376.1
Chr2	CDS	17208365	17208751	17208365	ID=cds.MsaT007376.1;Parent=MsaT007376.1
Chr2	exon	17209735	17209897	17209735	ID=MsaT007376.1.exon3;Parent=MsaT007376.1
Chr2	CDS	17209735	17209897	17209735	ID=cds.MsaT007376.1;Parent=MsaT007376.1
Chr2	exon	17211219	17211329	17211219	ID=MsaT007376.1.exon4;Parent=MsaT007376.1
Chr2	CDS	17211219	17211329	17211219	ID=cds.MsaT007376.1;Parent=MsaT007376.1
Chr2	exon	17212590	17212658	17212590	ID=MsaT007376.1.exon5;Parent=MsaT007376.1
Chr2	CDS	17212590	17212658	17212590	ID=cds.MsaT007376.1;Parent=MsaT007376.1
Chr2	exon	17214139	17214225	17214139	ID=MsaT007376.1.exon6;Parent=MsaT007376.1
Chr2	CDS	17214139	17214225	17214139	ID=cds.MsaT007376.1;Parent=MsaT007376.1
Chr2	exon	17214571	17215413	17214571	ID=MsaT007376.1.exon7;Parent=MsaT007376.1
Chr2	CDS	17214571	17215413	17214571	ID=cds.MsaT007376.1;Parent=MsaT007376.1

Gene Sequence

>MsaT007376.1

ATGGAGGATTCCGAAGGAGTCCTCAACTTCGATTTCGAGGGCGGTCTCGACGCACAACCTTCCGCCGCCACTGCAATCACCTCCACCGCCGCCGTCTCCACCCCGATCGTCCAATCCGATTCCTACTTACCACCTTCCAATGGAGCCGCAACCGCGACTCCATCTGTTGCTGAACATACTCCCGGTAATGCTCCCGGTCGACGGAGCTTCCGGCAAACGGTGTGTCGTCACTGGCTAAGGAGTTTGTGTATGAAAGGTGAAGCGTGTGGGTTTTTGCATCAGTATGATAAAGCGAGAATGCCGATTTGTCGGTTTTTTAGATTGTATGGAGAATGTCGTGAACAGGATTGTGTTTATAAGCATACTAATGATGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCTAATGGGCCTGATTGTCGATATAGGCATGCAAAATCTCCTGGACCTCCTCCTCCAATTGAAGAGGTTCTTCAAAAGATCCAACATTTATATTCTTACAATTACAACAACTCTCACAAGTTTAACCAACAAAGGGGTTCTAACTATAATCAACAAGTTGAAAAGTCTCAGTTTCCTCAAGGAATTAATTCTGCAAACCAAGGTGCGGTTGGAAAACCATTAGTTGCAGAGTCAGGAAATGGCCAGCAGCAGCAACAAGTTCAACAGTCTCAGCAGCAAGTCAGCCAGAACCAGGCGCAAAATCTTGCTAATGGCCAGCCCAATCAAGCCAATCGAACATCAACTCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAGAGTTGCAATCGTGAAAACTTGGAGTTGTCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCAAAACTAAATGAAGCATTCGACTCTGTGGAAAACGTGATATTGATTTTCTCAGTCAACCGTACTCGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCTCATGGAACGGCACATTATGGACGTAATTTCTCTGTTAAGTGGTTGAAGTTATGTGAACTATCATTCCACAAAACTCGCCATTTGAGAAATCCATACAATGAGAACTTACCGGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCCTCTATCGGTGAGCAGTTGGCATCCTTGCTATATACTGAGCCAGATAGTGAACTTATGGCTATCTCAATTGCAGCAGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTCAAGCTGCAGGGCCAGCTGTTCAAGGAAGAGGTAGGGGCAGAGGAGGTATGATGTGGCCCCCTCACATGCATCTTGGGCGTGGAGCAAGACCGATCCATGGAATGCAAAATTTTAATCCTATGATGGGCGATGGATTATCCTACGGACCTGCTGGACCCGATGGTTTCGGTATGCCAGATCTTTTTGGCATGGGTCCCCGAGGTTTTGGTCCATACGGTCCTAGGTTCGGTGGTGATTTTGGGGGTCCCCCAGCTGGCATGATGTTCCGAGGTCGACCCTCAAACCCTGGTATGTTTCCCGGTGGTGGATTCGGGATGATGATGAATCCTGGACGCGGTCCTTTTATGGGGGGAATGGGGGTTCCAGGTCCAAACGCACCAAGAGGTGGTAGGCCAGTCAATATGCCTCCGATGTTTCCACCACCTCCACCTCCACCACAAAATATAAACCGGACTGGCAAAAGAGATCAAAGACCAAGTGATCGGAATGATAGGTATAGTTCAGGACCAGATCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGGGGTCCTGATGATGACATGCAGTATCAGCAAGGATACAACAAGTCACAACAAGATGATCGGAATGACGATAGTGAAAGTGAAGATGAGGCACCTAGGCGGTCAAGACACGGAGAGGGGAAAAAAAGAAAAGGAGAATCTTAG

Protein sequence

>MsaT007376.1

MEDSEGVLNFDFEGGLDAQPSAATAITSTAAVSTPIVQSDSYLPPSNGAATATPSVAEHTPGNAPGRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKARMPICRFFRLYGECREQDCVYKHTNDDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPIEEVLQKIQHLYSYNYNNSHKFNQQRGSNYNQQVEKSQFPQGINSANQGAVGKPLVAESGNGQQQQQVQQSQQQVSQNQAQNLANGQPNQANRTSTPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYTEPDSELMAISIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGQAAGPAVQGRGRGRGGMMWPPHMHLGRGARPIHGMQNFNPMMGDGLSYGPAGPDGFGMPDLFGMGPRGFGPYGPRFGGDFGGPPAGMMFRGRPSNPGMFPGGGFGMMMNPGRGPFMGGMGVPGPNAPRGGRPVNMPPMFPPPPPPPQNINRTGKRDQRPSDRNDRYSSGPDQGKSQDMLSQSGGPDDDMQYQQGYNKSQQDDRNDDSESEDEAPRRSRHGEGKKRKGES*