AlfalfaGEDB | MsaG007376

M. sativa ssp. caerulea / MsaG007376

KEGG: K14404
GO: GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010363 GO:0010467 GO:0010468 GO:0010646 GO:0010941 GO:0010942 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0023051 GO:0031123 GO:0031124 GO:0031323 GO:0031347 GO:0031349 GO:0031440 GO:0031974 GO:0031981 GO:0032991 GO:0034052 GO:0034641 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050684 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1900363 GO:1901360 GO:1901363 GO:1903311 GO:2000031 GO:2001023 GO:2001038
PFAM: PF04146.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007376	XP_013463003.1	97.804	683	15	0	1	683	1	683	0.0	1384

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007376	sp\|A9LNK9\|CPSF_ARATH	61.752	685	203	16	1	680	1	631	0.0	665

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007376	tr\|A0A072V6R5\|A0A072V6R5_MEDTR	97.804	683	15	0	1	683	1	683	0.0	1384

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TFs/TRs:

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Gene ID	Type	Classification
MsaG007376	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001963	MsaG007376	0.823374	2.532166e-53	6.094230e-51
MsaG007042	MsaG007376	0.823856	1.955843e-53	4.768829e-51
MsaG007376	MsaG010305	0.801880	1.225843e-48	1.729448e-46
MsaG007376	MsaG010757	0.804560	3.439186e-49	5.161073e-47
MsaG007376	MsaG010799	0.812253	7.993784e-51	1.442508e-48
MsaG007376	MsaG014655	0.800828	2.008115e-48	2.766320e-46
MsaG007376	MsaG021165	0.833678	8.432847e-56	2.715789e-53
MsaG007376	MsaG021264	0.810688	1.742477e-50	3.025938e-48
MsaG007376	MsaG023997	0.804138	4.205779e-49	6.250158e-47
MsaG007376	MsaG028632	0.833880	7.511984e-56	2.433319e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007376	MtrunA17_Chr2g0292081	97.804	683	15	0	1	683	1	683	0.0	1384
MsaG007376	MtrunA17_Chr7g0253191	29.710	138	91	2	259	394	431	564	1.89e-12	70.5
MsaG007376	MtrunA17_Chr4g0000071	26.316	152	101	3	259	403	395	542	2.74e-12	70.1
MsaG007376	MtrunA17_Chr8g0380431	25.949	158	107	2	231	382	393	546	3.03e-12	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007376	AT1G30460.1	61.752	685	203	16	1	680	1	631	0.0	665
MsaG007376	AT1G30460.2	67.225	418	105	8	1	413	1	391	4.69e-180	518
MsaG007376	AT1G30460.3	56.767	266	83	8	1	261	1	239	1.63e-75	243
MsaG007376	AT4G11970.2	50.667	150	70	3	246	394	61	207	4.60e-35	137
MsaG007376	AT4G11970.5	50.667	150	70	3	246	394	61	207	5.25e-35	137
MsaG007376	AT4G11970.3	50.667	150	70	3	246	394	61	207	1.48e-34	136
MsaG007376	AT4G11970.1	50.667	150	70	3	246	394	61	207	2.90e-33	133
MsaG007376	AT4G11970.4	50.667	150	70	3	246	394	61	207	2.90e-33	133
MsaG007376	AT4G11970.6	52.294	109	50	2	287	394	2	109	9.99e-23	99.4
MsaG007376	AT4G11970.7	52.294	109	50	2	287	394	2	109	1.14e-22	98.6

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Find 218 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATTAGTTGCAGAGTC+AGG	0.474307	2:+17208597	MsaT007376.1:CDS
AAAGTGAAGATGAGGCACCT+AGG	0.663202	2:+17215346	MsaT007376.1:CDS
AAATGAAGCATTCGACTCTG+TGG	0.611269	2:+17209828	MsaT007376.1:CDS
AACAGATGGAGTCGCGGTTG+CGG	0.476724	2:-17205270	None:intergenic
AACATCGGAGGCATATTGAC+TGG	0.571438	2:-17215117	None:intergenic
AACCCTGGTATGTTTCCCGG+TGG	0.675845	2:+17215006	MsaT007376.1:CDS
AAGACATGCTCAGTCAAAGT+GGG	0.562941	2:+17215250	MsaT007376.1:CDS
AAGATGACATCCAGAATTGG+TGG	0.629196	2:+17211228	MsaT007376.1:CDS
AAGCGAGAATGCCGATTTGT+CGG	0.414926	2:+17205414	MsaT007376.1:CDS
AAGGAGTATGGGCAACTCAA+AGG	0.574768	2:+17209788	MsaT007376.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	17205125	17215413	17205125	ID=MsaG007376
Chr2	mRNA	17205125	17215413	17205125	ID=MsaT007376.1;Parent=MsaG007376
Chr2	exon	17205125	17205516	17205125	ID=MsaT007376.1.exon1;Parent=MsaT007376.1
Chr2	CDS	17205125	17205516	17205125	ID=cds.MsaT007376.1;Parent=MsaT007376.1
Chr2	exon	17208365	17208751	17208365	ID=MsaT007376.1.exon2;Parent=MsaT007376.1
Chr2	CDS	17208365	17208751	17208365	ID=cds.MsaT007376.1;Parent=MsaT007376.1
Chr2	exon	17209735	17209897	17209735	ID=MsaT007376.1.exon3;Parent=MsaT007376.1
Chr2	CDS	17209735	17209897	17209735	ID=cds.MsaT007376.1;Parent=MsaT007376.1
Chr2	exon	17211219	17211329	17211219	ID=MsaT007376.1.exon4;Parent=MsaT007376.1
Chr2	CDS	17211219	17211329	17211219	ID=cds.MsaT007376.1;Parent=MsaT007376.1
Chr2	exon	17212590	17212658	17212590	ID=MsaT007376.1.exon5;Parent=MsaT007376.1
Chr2	CDS	17212590	17212658	17212590	ID=cds.MsaT007376.1;Parent=MsaT007376.1
Chr2	exon	17214139	17214225	17214139	ID=MsaT007376.1.exon6;Parent=MsaT007376.1
Chr2	CDS	17214139	17214225	17214139	ID=cds.MsaT007376.1;Parent=MsaT007376.1
Chr2	exon	17214571	17215413	17214571	ID=MsaT007376.1.exon7;Parent=MsaT007376.1
Chr2	CDS	17214571	17215413	17214571	ID=cds.MsaT007376.1;Parent=MsaT007376.1

Gene Sequence

>MsaT007376.1

ATGGAGGATTCCGAAGGAGTCCTCAACTTCGATTTCGAGGGCGGTCTCGACGCACAACCTTCCGCCGCCACTGCAATCACCTCCACCGCCGCCGTCTCCACCCCGATCGTCCAATCCGATTCCTACTTACCACCTTCCAATGGAGCCGCAACCGCGACTCCATCTGTTGCTGAACATACTCCCGGTAATGCTCCCGGTCGACGGAGCTTCCGGCAAACGGTGTGTCGTCACTGGCTAAGGAGTTTGTGTATGAAAGGTGAAGCGTGTGGGTTTTTGCATCAGTATGATAAAGCGAGAATGCCGATTTGTCGGTTTTTTAGATTGTATGGAGAATGTCGTGAACAGGATTGTGTTTATAAGCATACTAATGATGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCTAATGGGCCTGATTGTCGATATAGGCATGCAAAATCTCCTGGACCTCCTCCTCCAATTGAAGAGGTTCTTCAAAAGATCCAACATTTATATTCTTACAATTACAACAACTCTCACAAGTTTAACCAACAAAGGGGTTCTAACTATAATCAACAAGTTGAAAAGTCTCAGTTTCCTCAAGGAATTAATTCTGCAAACCAAGGTGCGGTTGGAAAACCATTAGTTGCAGAGTCAGGAAATGGCCAGCAGCAGCAACAAGTTCAACAGTCTCAGCAGCAAGTCAGCCAGAACCAGGCGCAAAATCTTGCTAATGGCCAGCCCAATCAAGCCAATCGAACATCAACTCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAGAGTTGCAATCGTGAAAACTTGGAGTTGTCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCAAAACTAAATGAAGCATTCGACTCTGTGGAAAACGTGATATTGATTTTCTCAGTCAACCGTACTCGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCTCATGGAACGGCACATTATGGACGTAATTTCTCTGTTAAGTGGTTGAAGTTATGTGAACTATCATTCCACAAAACTCGCCATTTGAGAAATCCATACAATGAGAACTTACCGGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCCTCTATCGGTGAGCAGTTGGCATCCTTGCTATATACTGAGCCAGATAGTGAACTTATGGCTATCTCAATTGCAGCAGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTCAAGCTGCAGGGCCAGCTGTTCAAGGAAGAGGTAGGGGCAGAGGAGGTATGATGTGGCCCCCTCACATGCATCTTGGGCGTGGAGCAAGACCGATCCATGGAATGCAAAATTTTAATCCTATGATGGGCGATGGATTATCCTACGGACCTGCTGGACCCGATGGTTTCGGTATGCCAGATCTTTTTGGCATGGGTCCCCGAGGTTTTGGTCCATACGGTCCTAGGTTCGGTGGTGATTTTGGGGGTCCCCCAGCTGGCATGATGTTCCGAGGTCGACCCTCAAACCCTGGTATGTTTCCCGGTGGTGGATTCGGGATGATGATGAATCCTGGACGCGGTCCTTTTATGGGGGGAATGGGGGTTCCAGGTCCAAACGCACCAAGAGGTGGTAGGCCAGTCAATATGCCTCCGATGTTTCCACCACCTCCACCTCCACCACAAAATATAAACCGGACTGGCAAAAGAGATCAAAGACCAAGTGATCGGAATGATAGGTATAGTTCAGGACCAGATCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGGGGTCCTGATGATGACATGCAGTATCAGCAAGGATACAACAAGTCACAACAAGATGATCGGAATGACGATAGTGAAAGTGAAGATGAGGCACCTAGGCGGTCAAGACACGGAGAGGGGAAAAAAAGAAAAGGAGAATCTTAG

Protein sequence

>MsaT007376.1

MEDSEGVLNFDFEGGLDAQPSAATAITSTAAVSTPIVQSDSYLPPSNGAATATPSVAEHTPGNAPGRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKARMPICRFFRLYGECREQDCVYKHTNDDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPIEEVLQKIQHLYSYNYNNSHKFNQQRGSNYNQQVEKSQFPQGINSANQGAVGKPLVAESGNGQQQQQVQQSQQQVSQNQAQNLANGQPNQANRTSTPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYTEPDSELMAISIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGQAAGPAVQGRGRGRGGMMWPPHMHLGRGARPIHGMQNFNPMMGDGLSYGPAGPDGFGMPDLFGMGPRGFGPYGPRFGGDFGGPPAGMMFRGRPSNPGMFPGGGFGMMMNPGRGPFMGGMGVPGPNAPRGGRPVNMPPMFPPPPPPPQNINRTGKRDQRPSDRNDRYSSGPDQGKSQDMLSQSGGPDDDMQYQQGYNKSQQDDRNDDSESEDEAPRRSRHGEGKKRKGES*