AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG007397


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG007397 MtrunA17_Chr2g0292391 99.761 836 2 0 1 836 1 836 0.0 1734
MsaG007397 MtrunA17_Chr4g0028991 69.405 840 238 7 4 836 19 846 0.0 1197
MsaG007397 MtrunA17_Chr2g0331131 67.425 835 257 9 9 836 10 836 0.0 1165
MsaG007397 MtrunA17_Chr3g0140351 66.667 834 258 9 9 836 16 835 0.0 1157
MsaG007397 MtrunA17_Chr8g0340411 66.427 834 262 9 9 836 11 832 0.0 1153
MsaG007397 MtrunA17_Chr2g0326731 63.464 843 282 9 4 836 13 839 0.0 1101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG007397 AT2G34710.1 78.784 839 164 9 7 836 19 852 0.0 1363
MsaG007397 AT1G30490.1 76.932 841 169 10 7 836 15 841 0.0 1338
MsaG007397 AT5G60690.1 66.942 847 247 11 4 836 15 842 0.0 1149
MsaG007397 AT1G52150.1 66.189 837 261 13 9 836 13 836 0.0 1130
MsaG007397 AT1G52150.2 66.229 838 260 14 9 836 13 837 0.0 1128
MsaG007397 AT4G32880.1 64.628 834 278 12 9 836 11 833 0.0 1112
MsaG007397 AT1G52150.3 66.033 789 246 13 9 788 13 788 0.0 1053
MsaG007397 AT5G32670.1 80.000 70 14 0 286 355 37 106 1.31e-31 122
MsaG007397 AT4G04890.2 30.534 131 62 3 13 122 65 187 2.79e-11 67.8
MsaG007397 AT4G04890.2 21.569 510 302 19 189 670 297 736 9.43e-11 66.2
MsaG007397 AT4G04890.1 30.534 131 62 3 13 122 65 187 2.79e-11 67.8
MsaG007397 AT4G04890.1 21.569 510 302 19 189 670 297 736 9.43e-11 66.2
MsaG007397 AT4G21750.2 23.625 309 191 10 189 478 306 588 3.14e-11 67.8
MsaG007397 AT4G21750.1 23.625 309 191 10 189 478 306 588 3.14e-11 67.8
MsaG007397 AT4G21750.3 23.625 309 191 10 189 478 306 588 3.14e-11 67.8
MsaG007397 AT4G21750.4 23.625 309 191 10 189 478 306 588 3.14e-11 67.8
MsaG007397 AT3G61150.1 31.783 129 67 3 13 124 113 237 9.44e-11 66.2

Find 221 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGATACTTAACTGATTT+AGG 0.211026 2:+17581110 None:intergenic
CGTGCCAGTGCAACATCTTC+TGG 0.212898 2:+17581383 None:intergenic
AGTGATTCTCAAAGGTAAAT+TGG 0.270937 2:+17580878 None:intergenic
TCTCATCTGGTGTATGAAAA+TGG 0.286768 2:-17583824 MsaT007397.1:CDS
GATGCCCTCTTATTGCCTTC+TGG 0.294752 2:-17581155 MsaT007397.1:CDS
CGATCAGAATGGGCTGATTA+TGG 0.299721 2:-17581662 MsaT007397.1:CDS
TCCAAAGCTTCAACTTGTTC+AGG 0.301125 2:+17584773 None:intergenic
CGATGACGGTTGGTCGTTGC+TGG 0.308758 2:-17581965 MsaT007397.1:CDS
CTTGGGCCAAAGTCTCTTCC+TGG 0.311536 2:-17580751 MsaT007397.1:CDS
CTGCAAAGGATTCATCTATA+GGG 0.317197 2:+17581180 None:intergenic
CGTGCCAAAGCATGAGCTTC+TGG 0.318520 2:+17580724 None:intergenic
GCTTCTACTGGTGGCCCTAC+AGG 0.321934 2:-17582624 MsaT007397.1:CDS
CCCTTTGAGGACGCTGAGTT+GGG 0.322005 2:+17583549 None:intergenic
CGCTATCCCACTAGAGTTGC+GGG 0.322607 2:+17583186 None:intergenic
TCATCAATGTTCCCAACATT+TGG 0.323462 2:-17581871 MsaT007397.1:CDS
TAGAGGGGCCTCAGAACTTC+AGG 0.327055 2:+17582391 None:intergenic
TGGCTGCAGCACGAGACTTT+TGG 0.327088 2:-17582793 MsaT007397.1:CDS
AATTACCTGTTGCATAATCT+TGG 0.333667 2:+17580263 None:intergenic
CTGGGAAAGCCACCGGGTCT+TGG 0.333766 2:+17581584 None:intergenic
TCTGCAAAGGATTCATCTAT+AGG 0.335291 2:+17581179 None:intergenic
CACCCAGTCGACAGCAGTTC+CGG 0.346069 2:+17583355 None:intergenic
GTGATCAACAATATGAATAA+TGG 0.348818 2:+17582524 None:intergenic
AACCTAAACAGATCAAAGTT+TGG 0.353061 2:-17584667 MsaT007397.1:CDS
CGTGCTGCAGCCAAAGTTGT+AGG 0.366709 2:+17582803 None:intergenic
TCCTGAACAAGTTGAAGCTT+TGG 0.370693 2:-17584774 MsaT007397.1:CDS
AACCAAACTTTGATCTGTTT+AGG 0.371881 2:+17584665 None:intergenic
TGGTTTGAAAAGGTGAATAT+TGG 0.372040 2:+17580390 None:intergenic
GGAATTGATGAAAATTCAAT+TGG 0.372836 2:-17581227 MsaT007397.1:CDS
TAGCTTTCATGTTCATCAAC+TGG 0.374323 2:-17580029 MsaT007397.1:CDS
GAAAACCAGAAGGCAATAAG+AGG 0.376994 2:+17581150 None:intergenic
TGCAATGAACAAGCTCTTGA+TGG 0.381020 2:-17583876 MsaT007397.1:CDS
ACTGAGATATACTACAAGTT+TGG 0.384206 2:-17582768 MsaT007397.1:CDS
GACGTATGCGCCTACAACTT+TGG 0.386052 2:-17582813 MsaT007397.1:CDS
CCTGGCAGAGTTCCTATCTA+AGG 0.394397 2:-17583381 MsaT007397.1:CDS
TCTCGGCCAGGTACTCAGCT+TGG 0.412971 2:-17580769 MsaT007397.1:CDS
GTCGACTGGGTGCAGATGAT+TGG 0.420555 2:-17583344 MsaT007397.1:CDS
CCACAACACTACGCACATAC+TGG 0.420779 2:+17580827 None:intergenic
AGGTAAAATGACCTGGCTGC+TGG 0.424070 2:+17581565 None:intergenic
CTCGGCCAGGTACTCAGCTT+GGG 0.425766 2:-17580768 MsaT007397.1:CDS
CGTCCATCTGGTGAAGGTGC+TGG 0.432133 2:-17580943 MsaT007397.1:CDS
TGTCTTTGTGTAGCCTGGTC+CGG 0.433455 2:-17583233 MsaT007397.1:intron
GGGTTGTTTGCATCCCTTTG+AGG 0.434329 2:+17583536 None:intergenic
CTTCCTTTCTTTGCTTCTCA+CGG 0.436865 2:+17583933 None:intergenic
TTCGCCAGAAGCTCATGCTT+TGG 0.437914 2:-17580728 MsaT007397.1:CDS
GTTCTCCAAGATTATGCAAC+AGG 0.439721 2:-17580268 MsaT007397.1:intron
TCTAGTAATGCTCGTCCATC+TGG 0.440636 2:-17580955 MsaT007397.1:CDS
CTGGCTGCTGGGAAAGCCAC+CGG 0.441166 2:+17581577 None:intergenic
GTGCCAGTGCAACATCTTCT+GGG 0.442652 2:+17581384 None:intergenic
TCCCTTTGAGGACGCTGAGT+TGG 0.445674 2:+17583548 None:intergenic
CAGGGTTATGCATCTCTGCC+AGG 0.448828 2:-17580144 MsaT007397.1:CDS
GTTTAGGTTCAATGTTAGAA+AGG 0.451232 2:+17584681 None:intergenic
GCAGAAGCAAGTTTCTCATC+TGG 0.452876 2:-17583837 MsaT007397.1:CDS
TTTGTGTATCAAGTATGAAT+AGG 0.458792 2:-17580116 MsaT007397.1:CDS
TCAGCTCTCACAAAATTTGA+CGG 0.461588 2:+17582594 None:intergenic
CACGTTTACAGACAGTGAAT+AGG 0.461719 2:-17583907 MsaT007397.1:CDS
GCATGAGCTTCTGGCGAACC+AGG 0.462184 2:+17580733 None:intergenic
TCCAGTGGAGAAATTCAGTA+TGG 0.463307 2:-17582216 MsaT007397.1:CDS
CTACCGGAACTGCTGTCGAC+TGG 0.464066 2:-17583358 MsaT007397.1:CDS
CTGCAGTAGCATTGATGCCT+TGG 0.464912 2:+17581831 None:intergenic
TAGTCTTCTCGCCGTGGCTG+AGG 0.466571 2:-17583408 MsaT007397.1:CDS
TGTTGTCTTCTCAAAGAACT+AGG 0.467328 2:+17584725 None:intergenic
TCGACTGGGTGCAGATGATT+GGG 0.468510 2:-17583343 MsaT007397.1:CDS
CAGTTCCGGTAGCCTTAGAT+AGG 0.468587 2:+17583369 None:intergenic
AGAACATTGGATTTACTTGA+AGG 0.468751 2:-17580979 MsaT007397.1:CDS
CCATGGCAATTGCGCCCTCT+CGG 0.469500 2:-17580786 MsaT007397.1:CDS
TAGCCTGGTCCGGAATCTAT+TGG 0.469832 2:-17583223 MsaT007397.1:CDS
CTTGGACACGGAACTGCATA+GGG 0.470550 2:+17581602 None:intergenic
TAAATTGGAATGCAATTGTA+AGG 0.473795 2:+17580893 None:intergenic
ACTTTCTATGCATAAAGAAA+TGG 0.474459 2:-17584822 MsaT007397.1:CDS
CTTCTCAAAGAACTAGGCTT+AGG 0.476477 2:+17584731 None:intergenic
ATGCAATATTGAAACAACTT+TGG 0.476907 2:-17580544 MsaT007397.1:CDS
ATTAAGAACTTTCCATGCAA+TGG 0.481074 2:+17580074 None:intergenic
CCCAACTCAGCGTCCTCAAA+GGG 0.484390 2:-17583549 MsaT007397.1:CDS
CTCTAGACTCACAAGGCCGC+AGG 0.485153 2:+17583156 None:intergenic
GGCGAACCAGGAAGAGACTT+TGG 0.485486 2:+17580745 None:intergenic
TCTTGGACACGGAACTGCAT+AGG 0.487296 2:+17581601 None:intergenic
TCAACTGGTCCTTTGTCTGA+TGG 0.487503 2:-17580014 None:intergenic
GCGCGACAATGTGGCTTCCA+TGG 0.487773 2:-17580854 MsaT007397.1:CDS
CCTTAGATAGGAACTCTGCC+AGG 0.488058 2:+17583381 None:intergenic
GCAATTGCGCCCTCTCGGCC+AGG 0.488973 2:-17580781 MsaT007397.1:CDS
CATGAAAGCTAAGCAGTGAT+TGG 0.490947 2:+17580041 None:intergenic
CAAGCATGTCTAGTCCAGCC+TGG 0.492233 2:+17580370 None:intergenic
GGTGAAGGTGCTGGTTCAAA+CGG 0.495460 2:-17580934 MsaT007397.1:CDS
CTTCTACTGGTGGCCCTACA+GGG 0.495589 2:-17582623 MsaT007397.1:CDS
CAACAAAATAATACCTTAGT+GGG 0.496377 2:+17583133 None:intergenic
ACAACAAAATAATACCTTAG+TGG 0.496744 2:+17583132 None:intergenic
GGTAAAATGACCTGGCTGCT+GGG 0.497199 2:+17581566 None:intergenic
CGCCGTGGCTGAGGAGACCC+TGG 0.498447 2:-17583399 MsaT007397.1:CDS
GAGGGAGCATCGATCAGAAT+GGG 0.498992 2:-17581672 MsaT007397.1:CDS
AGGGATGCAAACAACCCAGC+TGG 0.499948 2:-17583530 MsaT007397.1:CDS
CCTGGAGGTAGTTCGTATAG+AGG 0.500505 2:-17581420 MsaT007397.1:CDS
CTTAACTGATTTAGGATCCA+AGG 0.504335 2:+17581118 None:intergenic
AAAGGTGTTACTAACCCAGC+TGG 0.505524 2:+17583515 None:intergenic
GCTGTTTCCCGCAACTCTAG+TGG 0.506941 2:-17583193 MsaT007397.1:CDS
CAGTCTATCTTTAAGAATCT+CGG 0.507367 2:+17583025 None:intergenic
AGACACCACCTCCAAATGTT+GGG 0.507773 2:+17581860 None:intergenic
TGAGGGAGCATCGATCAGAA+TGG 0.509076 2:-17581673 MsaT007397.1:CDS
TGGATGCTGGTAAATATGTA+AGG 0.509737 2:-17584802 MsaT007397.1:CDS
TACCGGAACTGCTGTCGACT+GGG 0.512119 2:-17583357 MsaT007397.1:CDS
TCAATGTTCCCAACATTTGG+AGG 0.512154 2:-17581868 MsaT007397.1:CDS
TGGGAACATTGATGAATAGT+TGG 0.512795 2:+17581879 None:intergenic
CTAAAAGTTCTCAAAACAGC+TGG 0.514675 2:+17582180 None:intergenic
TTTGGCCCAAGCTGAGTACC+TGG 0.517249 2:+17580763 None:intergenic
TCCAATGTTCTTGATGTGGT+TGG 0.518577 2:+17580991 None:intergenic
TAGTCCAGCCTGGTTTGAAA+AGG 0.518962 2:+17580380 None:intergenic
AGTATTGTTCCCACTGGTGG+TGG 0.521836 2:-17582966 MsaT007397.1:CDS
CTTGAGACAAGTAGCAGAGT+AGG 0.522118 2:+17581631 None:intergenic
GGGATAGCGGCGCGAGCCTG+CGG 0.522988 2:-17583172 MsaT007397.1:CDS
GCAACGATACCAATAGATTC+CGG 0.523309 2:+17583214 None:intergenic
AAGACACCACCTCCAAATGT+TGG 0.525330 2:+17581859 None:intergenic
CGGTGGCTTTCCCAGCAGCC+AGG 0.526408 2:-17581576 MsaT007397.1:CDS
GATAAAGTTCTTGATGAAGC+TGG 0.529856 2:-17580312 MsaT007397.1:CDS
CTTATTAGACCTTGCGAGGG+GGG 0.531367 2:-17582552 MsaT007397.1:CDS
GATGGATATCTAGAAGCTAC+AGG 0.533976 2:-17580702 MsaT007397.1:intron
TGGTCGTTGCTGGGAAATGA+TGG 0.534044 2:-17581955 MsaT007397.1:CDS
AGCTGAGTACCTGGCCGAGA+GGG 0.534467 2:+17580772 None:intergenic
CCTCTATACGAACTACCTCC+AGG 0.536475 2:+17581420 None:intergenic
CCGAGAGGGCGCAATTGCCA+TGG 0.536523 2:+17580786 None:intergenic
GTTCAAACGGATACAACCTT+AGG 0.536568 2:-17580921 MsaT007397.1:CDS
TGCTCGATCGTAGGAGCAAG+AGG 0.537333 2:+17581545 None:intergenic
ATTGTTCCCACTGGTGGTGG+TGG 0.537797 2:-17582963 MsaT007397.1:CDS
ACCCAACTCAGCGTCCTCAA+AGG 0.537810 2:-17583550 MsaT007397.1:CDS
ATACCAATAGATTCCGGACC+AGG 0.538578 2:+17583220 None:intergenic
CTGTTTCCCGCAACTCTAGT+GGG 0.539369 2:-17583192 MsaT007397.1:CDS
ACCATACTGAATTTCTCCAC+TGG 0.540930 2:+17582215 None:intergenic
CTCCCCAGAAGATGTTGCAC+TGG 0.541488 2:-17581387 MsaT007397.1:CDS
TATACTACAAGTTTGGAAGA+TGG 0.542037 2:-17582761 MsaT007397.1:CDS
CAAGGCATCAATGCTACTGC+AGG 0.542378 2:-17581830 MsaT007397.1:intron
GGGTTCAATGATGCTGTGAA+TGG 0.547394 2:-17581994 MsaT007397.1:CDS
ATGCATAAAGAAATGGATGC+TGG 0.548344 2:-17584815 MsaT007397.1:CDS
ACCTCTTCGTGCTCGATCGT+AGG 0.549405 2:+17581536 None:intergenic
GAGAAACTTGCTTCTGCAGA+CGG 0.551279 2:+17583843 None:intergenic
TGGCTGCTGGGAAAGCCACC+GGG 0.551326 2:+17581578 None:intergenic
GGTGCAGATGATTGGGATGA+AGG 0.553628 2:-17583336 MsaT007397.1:intron
TTGAGTATTGTTCCCACTGG+TGG 0.554422 2:-17582969 MsaT007397.1:CDS
GGAGAAATTCAGTATGGTGG+CGG 0.556309 2:-17582210 MsaT007397.1:CDS
AGATCGTTGAATGCTTCTAC+TGG 0.557406 2:-17582636 MsaT007397.1:CDS
GAGAAATTCAGTATGGTGGC+GGG 0.558050 2:-17582209 MsaT007397.1:CDS
AAGTTTGGTTTCAAAACCGA+AGG 0.558405 2:-17584652 MsaT007397.1:intron
GTGTTGTGGCATCAGTTCAG+AGG 0.560143 2:-17580813 MsaT007397.1:CDS
AAGTTCTTGATGAAGCTGGC+AGG 0.560167 2:-17580308 MsaT007397.1:CDS
TGTTGTGGCATCAGTTCAGA+GGG 0.563344 2:-17580812 MsaT007397.1:CDS
CTCACAAAATTTGACGGAGA+AGG 0.564082 2:+17582600 None:intergenic
TTGACGGAGAAGGCCCTGTA+GGG 0.564292 2:+17582610 None:intergenic
AGCACATAATTGCATCAGAA+TGG 0.566597 2:+17580519 None:intergenic
TTCCTTATTAGACCTTGCGA+GGG 0.569278 2:-17582555 MsaT007397.1:CDS
ATGTTCCCAACATTTGGAGG+TGG 0.569970 2:-17581865 MsaT007397.1:CDS
CAATTGTAAGGACCGACCTA+AGG 0.571125 2:+17580905 None:intergenic
ACGCACATACTGGCGAGCCA+TGG 0.571373 2:+17580837 None:intergenic
ATCAGTTCAGAGGGTTGCCA+TGG 0.571681 2:-17580803 MsaT007397.1:CDS
GGTTCAATGTTAGAAAGGAT+AGG 0.572911 2:+17584686 None:intergenic
AAGCCACCGGGTCTTGGACA+CGG 0.573476 2:+17581590 None:intergenic
CCGCTATCCCACTAGAGTTG+CGG 0.574881 2:+17583185 None:intergenic
TTTCCTTATTAGACCTTGCG+AGG 0.575216 2:-17582556 MsaT007397.1:CDS
GAACCAGCACCTTCACCAGA+TGG 0.575410 2:+17580940 None:intergenic
GGAGTGTCCCTGAAGTTCTG+AGG 0.576646 2:-17582399 MsaT007397.1:CDS
TCCAACCACATCAAGAACAT+TGG 0.578165 2:-17580992 MsaT007397.1:CDS
TTCTATTAGTCTTCTCGCCG+TGG 0.578172 2:-17583414 MsaT007397.1:intron
GTATTGAGTATTGTTCCCAC+TGG 0.580551 2:-17582972 MsaT007397.1:CDS
CTTATGAGCAAGCCATTGCA+TGG 0.582458 2:-17580086 MsaT007397.1:CDS
TTTGACGGAGAAGGCCCTGT+AGG 0.582982 2:+17582609 None:intergenic
TTAACTGATTTAGGATCCAA+GGG 0.583082 2:+17581119 None:intergenic
GAGTTCCTATCTAAGGCTAC+CGG 0.583759 2:-17583374 MsaT007397.1:CDS
AATAGAGCTTATGTACATGC+AGG 0.586783 2:-17582937 MsaT007397.1:intron
GATGACGGTTGGTCGTTGCT+GGG 0.587967 2:-17581964 MsaT007397.1:CDS
ATGCCGTGAGAAGCAAAGAA+AGG 0.588074 2:-17583936 MsaT007397.1:CDS
GGGATGCAAACAACCCAGCT+GGG 0.589348 2:-17583529 MsaT007397.1:intron
CTTGATACACAAATCCCTCC+TGG 0.589795 2:+17580126 None:intergenic
GTGAATGGATTTGTCGATGA+CGG 0.594332 2:-17581979 MsaT007397.1:CDS
GCAGTTCCGTGTCCAAGACC+CGG 0.594391 2:-17581596 MsaT007397.1:CDS
TTTGGAAGATGGAAGTCTTG+TGG 0.594978 2:-17582750 MsaT007397.1:intron
ATGGATTTGTCGATGACGGT+TGG 0.598019 2:-17581975 MsaT007397.1:CDS
CCTTATTAGACCTTGCGAGG+GGG 0.598121 2:-17582553 MsaT007397.1:CDS
TGCAAAGGATTCATCTATAG+GGG 0.599441 2:+17581181 None:intergenic
AGACAATAGCTGTGATTCTG+TGG 0.600443 2:-17583600 MsaT007397.1:CDS
AAGCTCATGCTTTGGCACGA+TGG 0.600650 2:-17580720 MsaT007397.1:CDS
CCGCAACTCTAGTGGGATAG+CGG 0.602930 2:-17583185 MsaT007397.1:CDS
CTGGAGGTAGTTCGTATAGA+GGG 0.605982 2:-17581419 MsaT007397.1:CDS
AACTTGTTGCAGCTTTGCAG+TGG 0.607045 2:-17581248 MsaT007397.1:intron
TCCTACGATCGAGCACGAAG+AGG 0.610109 2:-17581537 MsaT007397.1:intron
AGAGGGGCCTCAGAACTTCA+GGG 0.614871 2:+17582392 None:intergenic
AGGTGGTGTCTTGTGTGCCA+AGG 0.616015 2:-17581848 MsaT007397.1:CDS
TAAATCCAATGTTCTTGATG+TGG 0.616299 2:+17580987 None:intergenic
TCGTTGAATGCTTCTACTGG+TGG 0.616426 2:-17582633 MsaT007397.1:CDS
TATTGTACCACCACCACCAG+TGG 0.616482 2:+17582956 None:intergenic
TAAGAGGGCATCATCTGCAA+AGG 0.617843 2:+17581166 None:intergenic
TGCCAGGGTCTCCTCAGCCA+CGG 0.620608 2:+17583397 None:intergenic
GAGCAAGAGGTAAAATGACC+TGG 0.621422 2:+17581558 None:intergenic
TCCTTATTAGACCTTGCGAG+GGG 0.621648 2:-17582554 MsaT007397.1:CDS
AAGTTCTCAAAACAGCTGGT+TGG 0.626436 2:+17582184 None:intergenic
GTCGCGCAAGTGATTCTCAA+AGG 0.627622 2:+17580870 None:intergenic
CTTAGATAGGAACTCTGCCA+GGG 0.627679 2:+17583382 None:intergenic
TACTCAATACATCAACGCAT+CGG 0.631222 2:+17582985 None:intergenic
ATGGCTTGCTCATAAGACAC+TGG 0.631254 2:+17580093 None:intergenic
GTTATGCATCTCTGCCAGGA+GGG 0.632885 2:-17580140 MsaT007397.1:CDS
AATGCTCGTCCATCTGGTGA+AGG 0.634918 2:-17580949 MsaT007397.1:CDS
AAGGTGTTACTAACCCAGCT+GGG 0.638352 2:+17583516 None:intergenic
TGTGAGTCTAGAGCCCACTA+AGG 0.639840 2:-17583146 MsaT007397.1:intron
ATGGTTTCTCCATCAGACAA+AGG 0.640205 2:+17580005 None:intergenic
AAAACCAGAAGGCAATAAGA+GGG 0.641093 2:+17581151 None:intergenic
CCAGTATGTGCGTAGTGTTG+TGG 0.642038 2:-17580827 MsaT007397.1:CDS
ATTGTACCACCACCACCAGT+GGG 0.642522 2:+17582957 None:intergenic
GAATCACTTGCGCGACAATG+TGG 0.642715 2:-17580863 MsaT007397.1:CDS
AGTGGAGAAATTCAGTATGG+TGG 0.644496 2:-17582213 MsaT007397.1:CDS
CAGATAGCACAAGAATCCAG+TGG 0.652309 2:-17582231 MsaT007397.1:CDS
GGAATAACTCGAAAACCAGA+AGG 0.653126 2:+17581140 None:intergenic
CAATATTGCATCACTCGCTG+CGG 0.656475 2:+17580556 None:intergenic
TTCTTAAAGATAGACTGTCA+TGG 0.657592 2:-17583019 MsaT007397.1:CDS
GGTCTAATAAGGAAACCACT+AGG 0.658788 2:+17582564 None:intergenic
TGCCAGTGCAACATCTTCTG+GGG 0.660194 2:+17581385 None:intergenic
AGAATCACAGCTATTGTCTG+TGG 0.665084 2:+17583604 None:intergenic
TGCATTGGTGCAGTTCCTGG+AGG 0.665564 2:-17581435 MsaT007397.1:intron
AAGCTGAGTACCTGGCCGAG+AGG 0.669722 2:+17580771 None:intergenic
GGTTATGCATCTCTGCCAGG+AGG 0.674411 2:-17580141 MsaT007397.1:CDS
AATCGAACAAGCAAAGCAGG+AGG 0.677556 2:+17581698 None:intergenic
TAGTGGGCTCTAGACTCACA+AGG 0.690812 2:+17583149 None:intergenic
TGTGATTCTGTGGTAATGAG+TGG 0.695611 2:-17583590 MsaT007397.1:CDS
AGAGCTGAAATGCTTCCTAG+TGG 0.697674 2:-17582579 MsaT007397.1:CDS
GTTCCGTGTCCAAGACCCGG+TGG 0.700440 2:-17581593 MsaT007397.1:CDS
TTGGACACGGAACTGCATAG+GGG 0.719102 2:+17581603 None:intergenic
AAACGGATACAACCTTAGGT+CGG 0.721957 2:-17580917 MsaT007397.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 17580017 17584849 17580017 ID=MsaG007397
Chr2 mRNA 17580017 17584849 17580017 ID=MsaT007397.1;Parent=MsaG007397
Chr2 exon 17580017 17580163 17580017 ID=MsaT007397.1.exon18;Parent=MsaT007397.1
Chr2 CDS 17580017 17580163 17580017 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17580269 17580418 17580269 ID=MsaT007397.1.exon17;Parent=MsaT007397.1
Chr2 CDS 17580269 17580418 17580269 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17580502 17580613 17580502 ID=MsaT007397.1.exon16;Parent=MsaT007397.1
Chr2 CDS 17580502 17580613 17580502 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17580703 17581019 17580703 ID=MsaT007397.1.exon15;Parent=MsaT007397.1
Chr2 CDS 17580703 17581019 17580703 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17581124 17581258 17581124 ID=MsaT007397.1.exon14;Parent=MsaT007397.1
Chr2 CDS 17581124 17581258 17581124 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17581364 17581444 17581364 ID=MsaT007397.1.exon13;Parent=MsaT007397.1
Chr2 CDS 17581364 17581444 17581364 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17581538 17581726 17581538 ID=MsaT007397.1.exon12;Parent=MsaT007397.1
Chr2 CDS 17581538 17581726 17581538 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17581831 17582017 17581831 ID=MsaT007397.1.exon11;Parent=MsaT007397.1
Chr2 CDS 17581831 17582017 17581831 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17582165 17582271 17582165 ID=MsaT007397.1.exon10;Parent=MsaT007397.1
Chr2 CDS 17582165 17582271 17582165 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17582351 17582425 17582351 ID=MsaT007397.1.exon9;Parent=MsaT007397.1
Chr2 CDS 17582351 17582425 17582351 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17582512 17582667 17582512 ID=MsaT007397.1.exon8;Parent=MsaT007397.1
Chr2 CDS 17582512 17582667 17582512 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17582751 17582834 17582751 ID=MsaT007397.1.exon7;Parent=MsaT007397.1
Chr2 CDS 17582751 17582834 17582751 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17582938 17583051 17582938 ID=MsaT007397.1.exon6;Parent=MsaT007397.1
Chr2 CDS 17582938 17583051 17582938 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17583147 17583242 17583147 ID=MsaT007397.1.exon5;Parent=MsaT007397.1
Chr2 CDS 17583147 17583242 17583147 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17583337 17583427 17583337 ID=MsaT007397.1.exon4;Parent=MsaT007397.1
Chr2 CDS 17583337 17583427 17583337 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17583530 17583642 17583530 ID=MsaT007397.1.exon3;Parent=MsaT007397.1
Chr2 CDS 17583530 17583642 17583530 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17583799 17583958 17583799 ID=MsaT007397.1.exon2;Parent=MsaT007397.1
Chr2 CDS 17583799 17583958 17583799 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Chr2 exon 17584653 17584849 17584653 ID=MsaT007397.1.exon1;Parent=MsaT007397.1
Chr2 CDS 17584653 17584849 17584653 ID=cds.MsaT007397.1;Parent=MsaT007397.1
Gene Sequence

>MsaT007397.1

ATGGCACTTTCTATGCATAAAGAAATGGATGCTGGTAAATATGTAAGGTACACTCCTGAACAAGTTGAAGCTTTGGAGAGAGTTTATTCAGAATGTCCTAAGCCTAGTTCTTTGAGAAGACAACAACTCATTAGAGAATGTCCTATCCTTTCTAACATTGAACCTAAACAGATCAAAGTTTGGTTTCAAAACCGAAGATGCCGTGAGAAGCAAAGAAAGGAAGCTTCACGTTTACAGACAGTGAATAGGAAGTTGTCTGCAATGAACAAGCTCTTGATGGAAGAGAATGACCGTCTGCAGAAGCAAGTTTCTCATCTGGTGTATGAAAATGGATACATGAAGCAACAGATTCATACTGCTTCTGCTGCAACTACCACAGACAATAGCTGTGATTCTGTGGTAATGAGTGGTCAAAACCAACAGCAAAACCCAACTCAGCGTCCTCAAAGGGATGCAAACAACCCAGCTGGTCTTCTCGCCGTGGCTGAGGAGACCCTGGCAGAGTTCCTATCTAAGGCTACCGGAACTGCTGTCGACTGGGTGCAGATGATTGGGATGAAGCCTGGTCCGGAATCTATTGGTATCGTTGCTGTTTCCCGCAACTCTAGTGGGATAGCGGCGCGAGCCTGCGGCCTTGTGAGTCTAGAGCCCACTAAGGTTGCCGAGATTCTTAAAGATAGACTGTCATGGTATCGTGACTGCCGATGCGTTGATGTATTGAGTATTGTTCCCACTGGTGGTGGTGGTACAATAGAGCTTATGTACATGCAGACGTATGCGCCTACAACTTTGGCTGCAGCACGAGACTTTTGGACACTGAGATATACTACAAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCGTTGAATGCTTCTACTGGTGGCCCTACAGGGCCTTCTCCGTCAAATTTTGTGAGAGCTGAAATGCTTCCTAGTGGTTTCCTTATTAGACCTTGCGAGGGGGGCGGATCCATTATTCATATTGTTGATCACGTTGATTTAGATGTTTGGAGTGTCCCTGAAGTTCTGAGGCCCCTCTATGAATCGTCAAAAATCTTGGCTCAGAAATTGACTATTGCTGCATTGCAACACATAAAACAGATAGCACAAGAATCCAGTGGAGAAATTCAGTATGGTGGCGGGCGCCAACCAGCTGTTTTGAGAACTTTTAGTCAGAGACTTTGCAGGGGGTTCAATGATGCTGTGAATGGATTTGTCGATGACGGTTGGTCGTTGCTGGGAAATGATGGTGTTGAAGACGTAACAATTGCTGTAAACTCGTCTCCAAACAAGTTTTTGGGGTCCAACTATTCATCAATGTTCCCAACATTTGGAGGTGGTGTCTTGTGTGCCAAGGCATCAATGCTACTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTTTGAGGGAGCATCGATCAGAATGGGCTGATTATGGCGTTGATGCCTACTCTGCTACTTGTCTCAAGTCTAGCCCCTATGCAGTTCCGTGTCCAAGACCCGGTGGCTTTCCCAGCAGCCAGGTCATTTTACCTCTTGCTCCTACGATCGAGCACGAAGAGTTCCTGGAGGTAGTTCGTATAGAGGGACATGCATTCTCCCCAGAAGATGTTGCACTGGCACGTGATATGTATCTTTTGCAGCTTTGCAGTGGAATTGATGAAAATTCAATTGGAGCATGTGCTCAACTTGTGTTTGCCCCTATAGATGAATCCTTTGCAGATGATGCCCTCTTATTGCCTTCTGGTTTTCGAGTTATTCCCTTGGATCCTAAATCAGACGGTCCAACCACATCAAGAACATTGGATTTACTTGAAGGATCTAGTAATGCTCGTCCATCTGGTGAAGGTGCTGGTTCAAACGGATACAACCTTAGGTCGGTCCTTACAATTGCATTCCAATTTACCTTTGAGAATCACTTGCGCGACAATGTGGCTTCCATGGCTCGCCAGTATGTGCGTAGTGTTGTGGCATCAGTTCAGAGGGTTGCCATGGCAATTGCGCCCTCTCGGCCAGGTACTCAGCTTGGGCCAAAGTCTCTTCCTGGTTCGCCAGAAGCTCATGCTTTGGCACGATGGATATCTAGAAGCTACAGGATGCACACTGGTGCCGAGCTTTTTAGAGTTGAGTCCGCAGCGAGTGATGCAATATTGAAACAACTTTGGCACCATTCTGATGCAATTATGTGCTGTTCTGTAAAAACAAATGCATCTCCAATATTCACCTTTTCAAACCAGGCTGGACTAGACATGCTTGAAACTACTCTAGTTGCTCTTCAAGATATTATGCTTGATAAAGTTCTTGATGAAGCTGGCAGGAAGATTCTTTGCTCTGAGTTCTCCAAGATTATGCAACAGGGTTATGCATCTCTGCCAGGAGGGATTTGTGTATCAAGTATGAATAGGCCAGTGTCTTATGAGCAAGCCATTGCATGGAAAGTTCTTAATGATGATGATGCCAATCACTGCTTAGCTTTCATGTTCATCAACTGGTCCTTTGTCTGA

Protein sequence

>MsaT007397.1

MALSMHKEMDAGKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASAATTTDNSCDSVVMSGQNQQQNPTQRPQRDANNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPESIGIVAVSRNSSGIAARACGLVSLEPTKVAEILKDRLSWYRDCRCVDVLSIVPTGGGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLNASTGGPTGPSPSNFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIKQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGNDGVEDVTIAVNSSPNKFLGSNYSSMFPTFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSATCLKSSPYAVPCPRPGGFPSSQVILPLAPTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGIDENSIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPTTSRTLDLLEGSSNARPSGEGAGSNGYNLRSVLTIAFQFTFENHLRDNVASMARQYVRSVVASVQRVAMAIAPSRPGTQLGPKSLPGSPEAHALARWISRSYRMHTGAELFRVESAASDAILKQLWHHSDAIMCCSVKTNASPIFTFSNQAGLDMLETTLVALQDIMLDKVLDEAGRKILCSEFSKIMQQGYASLPGGICVSSMNRPVSYEQAIAWKVLNDDDANHCLAFMFINWSFV*