Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007433 | AES64817.2 | 90.881 | 658 | 50 | 3 | 1 | 657 | 1 | 649 | 0.0 | 1222 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007433 | sp|Q9FX31|HDG11_ARATH | 36.087 | 690 | 380 | 17 | 17 | 655 | 34 | 713 | 3.30e-133 | 411 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007433 | tr|G7IKY6|G7IKY6_MEDTR | 90.881 | 658 | 50 | 3 | 1 | 657 | 1 | 649 | 0.0 | 1222 |
Gene ID | Type | Classification |
---|---|---|
MsaG007433 | TF | HB-HD-ZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007433 | MtrunA17_Chr2g0292761 | 88.319 | 565 | 42 | 4 | 94 | 657 | 1 | 542 | 0.0 | 1004 |
MsaG007433 | MtrunA17_Chr6g0481041 | 35.684 | 709 | 390 | 16 | 7 | 655 | 21 | 723 | 6.08e-141 | 428 |
MsaG007433 | MtrunA17_Chr2g0292731 | 41.700 | 506 | 274 | 12 | 168 | 657 | 50 | 550 | 3.26e-118 | 363 |
MsaG007433 | MtrunA17_Chr4g0024351 | 33.962 | 689 | 408 | 16 | 4 | 655 | 51 | 729 | 2.62e-112 | 354 |
MsaG007433 | MtrunA17_Chr2g0292741 | 40.637 | 502 | 280 | 13 | 168 | 657 | 42 | 537 | 9.55e-112 | 347 |
MsaG007433 | MtrunA17_Chr8g0350321 | 33.380 | 716 | 403 | 22 | 3 | 655 | 102 | 806 | 7.31e-110 | 350 |
MsaG007433 | MtrunA17_Chr5g0410711 | 33.475 | 708 | 400 | 21 | 2 | 647 | 73 | 771 | 1.36e-109 | 348 |
MsaG007433 | MtrunA17_Chr2g0322731 | 33.824 | 680 | 411 | 14 | 8 | 655 | 93 | 765 | 1.63e-109 | 348 |
MsaG007433 | MtrunA17_Chr7g0246631 | 33.001 | 703 | 415 | 20 | 3 | 655 | 78 | 774 | 2.67e-109 | 347 |
MsaG007433 | MtrunA17_Chr1g0203671 | 32.766 | 705 | 396 | 20 | 17 | 655 | 97 | 789 | 2.24e-99 | 322 |
MsaG007433 | MtrunA17_Chr2g0331581 | 31.852 | 675 | 390 | 21 | 21 | 655 | 145 | 789 | 2.86e-94 | 308 |
MsaG007433 | MtrunA17_Chr6g0472471 | 30.590 | 729 | 416 | 26 | 2 | 655 | 52 | 765 | 8.09e-93 | 303 |
MsaG007433 | MtrunA17_Chr7g0224451 | 36.947 | 452 | 243 | 10 | 10 | 450 | 10 | 430 | 1.96e-91 | 290 |
MsaG007433 | MtrunA17_Chr5g0394111 | 30.074 | 675 | 401 | 16 | 4 | 656 | 22 | 647 | 1.34e-84 | 279 |
MsaG007433 | MtrunA17_Chr7g0224481 | 37.183 | 355 | 186 | 10 | 10 | 352 | 10 | 339 | 3.93e-65 | 218 |
MsaG007433 | MtrunA17_Chr2g0292771 | 86.179 | 123 | 17 | 0 | 535 | 657 | 3 | 125 | 1.77e-60 | 198 |
MsaG007433 | MtrunA17_Chr7g0224491 | 32.492 | 317 | 170 | 10 | 357 | 655 | 3 | 293 | 4.47e-37 | 140 |
MsaG007433 | MtrunA17_Chr2g0304191 | 51.128 | 133 | 61 | 3 | 191 | 320 | 2 | 133 | 3.54e-32 | 121 |
MsaG007433 | MtrunA17_Chr2g0319671 | 34.706 | 170 | 105 | 3 | 235 | 404 | 105 | 268 | 5.36e-27 | 112 |
MsaG007433 | MtrunA17_Chr5g0419821 | 46.667 | 90 | 48 | 0 | 22 | 111 | 41 | 130 | 1.25e-18 | 84.0 |
MsaG007433 | MtrunA17_Chr2g0319691 | 38.889 | 108 | 60 | 3 | 294 | 399 | 1 | 104 | 5.53e-15 | 72.8 |
MsaG007433 | MtrunA17_Chr7g0224431 | 31.250 | 160 | 69 | 5 | 204 | 362 | 1 | 120 | 4.26e-13 | 66.6 |
MsaG007433 | MtrunA17_Chr2g0292781 | 48.352 | 91 | 39 | 3 | 70 | 160 | 2 | 84 | 4.45e-13 | 65.1 |
MsaG007433 | MtrunA17_Chr2g0319701 | 30.058 | 173 | 105 | 4 | 500 | 657 | 59 | 230 | 1.08e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007433 | AT1G73360.1 | 36.087 | 690 | 380 | 17 | 17 | 655 | 34 | 713 | 3.35e-134 | 411 |
MsaG007433 | AT3G03260.1 | 38.177 | 702 | 371 | 23 | 4 | 657 | 9 | 695 | 3.72e-130 | 400 |
MsaG007433 | AT1G17920.2 | 35.714 | 700 | 386 | 19 | 1 | 655 | 1 | 681 | 2.03e-125 | 387 |
MsaG007433 | AT1G17920.1 | 35.714 | 700 | 386 | 19 | 1 | 655 | 1 | 681 | 2.03e-125 | 387 |
MsaG007433 | AT5G17320.1 | 35.873 | 722 | 382 | 23 | 2 | 655 | 7 | 715 | 1.34e-120 | 375 |
MsaG007433 | AT1G34650.1 | 36.561 | 692 | 375 | 17 | 22 | 657 | 23 | 706 | 4.09e-116 | 363 |
MsaG007433 | AT1G05230.3 | 35.059 | 676 | 401 | 16 | 4 | 655 | 53 | 714 | 8.18e-115 | 360 |
MsaG007433 | AT1G05230.8 | 34.860 | 677 | 403 | 16 | 4 | 655 | 53 | 716 | 4.57e-114 | 358 |
MsaG007433 | AT1G05230.4 | 34.860 | 677 | 403 | 16 | 4 | 655 | 53 | 716 | 4.57e-114 | 358 |
MsaG007433 | AT1G05230.9 | 34.860 | 677 | 403 | 16 | 4 | 655 | 53 | 716 | 4.57e-114 | 358 |
MsaG007433 | AT1G05230.10 | 34.860 | 677 | 403 | 16 | 4 | 655 | 53 | 716 | 4.57e-114 | 358 |
MsaG007433 | AT1G05230.7 | 34.860 | 677 | 403 | 16 | 4 | 655 | 53 | 716 | 4.57e-114 | 358 |
MsaG007433 | AT1G05230.11 | 34.860 | 677 | 403 | 16 | 4 | 655 | 53 | 716 | 4.57e-114 | 358 |
MsaG007433 | AT1G05230.2 | 34.860 | 677 | 403 | 16 | 4 | 655 | 53 | 716 | 4.57e-114 | 358 |
MsaG007433 | AT1G05230.6 | 34.860 | 677 | 403 | 16 | 4 | 655 | 53 | 716 | 4.57e-114 | 358 |
MsaG007433 | AT1G05230.5 | 34.860 | 677 | 403 | 16 | 4 | 655 | 53 | 716 | 4.57e-114 | 358 |
MsaG007433 | AT1G05230.1 | 34.860 | 677 | 403 | 16 | 4 | 655 | 53 | 716 | 4.57e-114 | 358 |
MsaG007433 | AT4G04890.2 | 34.488 | 693 | 407 | 16 | 4 | 655 | 49 | 735 | 2.25e-112 | 355 |
MsaG007433 | AT4G04890.1 | 34.488 | 693 | 407 | 16 | 4 | 655 | 49 | 735 | 2.25e-112 | 355 |
MsaG007433 | AT4G21750.2 | 33.333 | 705 | 399 | 15 | 14 | 655 | 61 | 757 | 6.17e-110 | 349 |
MsaG007433 | AT4G21750.1 | 33.333 | 705 | 399 | 15 | 14 | 655 | 61 | 757 | 6.17e-110 | 349 |
MsaG007433 | AT4G21750.3 | 33.333 | 705 | 399 | 15 | 14 | 655 | 61 | 757 | 6.17e-110 | 349 |
MsaG007433 | AT4G21750.4 | 33.333 | 705 | 399 | 15 | 14 | 655 | 61 | 757 | 6.17e-110 | 349 |
MsaG007433 | AT3G61150.1 | 33.241 | 725 | 395 | 22 | 3 | 655 | 96 | 803 | 3.58e-108 | 345 |
MsaG007433 | AT3G03260.2 | 40.226 | 532 | 281 | 15 | 4 | 506 | 9 | 532 | 2.48e-107 | 335 |
MsaG007433 | AT4G00730.1 | 33.237 | 692 | 409 | 19 | 3 | 655 | 121 | 798 | 6.14e-107 | 342 |
MsaG007433 | AT1G05230.12 | 34.929 | 564 | 335 | 11 | 4 | 546 | 53 | 605 | 1.73e-96 | 309 |
MsaG007433 | AT2G32370.1 | 30.088 | 678 | 424 | 17 | 4 | 647 | 52 | 713 | 2.25e-94 | 307 |
MsaG007433 | AT1G79840.3 | 32.589 | 672 | 398 | 23 | 12 | 655 | 40 | 684 | 7.72e-93 | 302 |
MsaG007433 | AT1G79840.6 | 32.589 | 672 | 398 | 23 | 12 | 655 | 40 | 684 | 7.72e-93 | 302 |
MsaG007433 | AT1G79840.1 | 32.589 | 672 | 398 | 23 | 12 | 655 | 98 | 742 | 3.51e-92 | 301 |
MsaG007433 | AT5G52170.3 | 31.667 | 660 | 382 | 17 | 21 | 655 | 63 | 678 | 6.73e-92 | 299 |
MsaG007433 | AT5G52170.1 | 31.667 | 660 | 382 | 17 | 21 | 655 | 63 | 678 | 6.73e-92 | 299 |
MsaG007433 | AT5G52170.2 | 31.515 | 660 | 388 | 15 | 21 | 655 | 63 | 683 | 7.81e-92 | 299 |
MsaG007433 | AT1G79840.2 | 32.589 | 672 | 398 | 23 | 12 | 655 | 127 | 771 | 1.19e-91 | 301 |
MsaG007433 | AT5G46880.3 | 32.732 | 721 | 408 | 27 | 2 | 657 | 100 | 808 | 1.29e-90 | 299 |
MsaG007433 | AT5G46880.1 | 32.732 | 721 | 408 | 27 | 2 | 657 | 100 | 808 | 1.29e-90 | 299 |
MsaG007433 | AT5G46880.2 | 32.732 | 721 | 408 | 27 | 2 | 657 | 100 | 808 | 1.29e-90 | 299 |
MsaG007433 | AT4G17710.1 | 31.467 | 661 | 388 | 21 | 17 | 657 | 90 | 705 | 5.20e-84 | 279 |
MsaG007433 | AT1G79840.4 | 32.601 | 546 | 328 | 16 | 12 | 540 | 98 | 620 | 1.85e-77 | 259 |
MsaG007433 | AT4G00730.2 | 35.142 | 424 | 245 | 9 | 3 | 401 | 121 | 539 | 4.59e-73 | 246 |
MsaG007433 | AT4G25530.1 | 27.628 | 666 | 458 | 11 | 2 | 655 | 29 | 682 | 5.88e-73 | 249 |
MsaG007433 | AT1G79840.5 | 33.741 | 409 | 236 | 14 | 12 | 405 | 98 | 486 | 4.52e-59 | 207 |
MsaG007433 | AT5G07260.2 | 25.137 | 549 | 312 | 24 | 75 | 599 | 11 | 484 | 2.77e-26 | 114 |
MsaG007433 | AT5G07260.1 | 24.865 | 555 | 311 | 24 | 75 | 599 | 11 | 489 | 1.07e-25 | 112 |
Find 114 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATTTGGTCGACATGTTTC+TGG | 0.149362 | 2:+17977082 | MsaT007433.1:CDS |
AAAGCTCCACTTTGACTTTC+TGG | 0.209562 | 2:-17977369 | None:intergenic |
AATAATCTTCACACCATCTT+TGG | 0.210210 | 2:-17979234 | None:intergenic |
TTCAACTCTTGTGTGTTTAC+AGG | 0.236305 | 2:-17979302 | None:intergenic |
GAAGTTCCATGAGCCATCTT+TGG | 0.238463 | 2:-17977866 | None:intergenic |
AGAGTTGACCACTACTTTAA+TGG | 0.241174 | 2:+17977002 | MsaT007433.1:CDS |
TGAAGTTGTTTCAAACTATT+AGG | 0.271208 | 2:-17976547 | None:intergenic |
TCAAAGTGGAGCTTTGTTAT+TGG | 0.273622 | 2:+17977377 | MsaT007433.1:CDS |
GATTCACAAATGGTGAAAAT+TGG | 0.281622 | 2:+17977053 | MsaT007433.1:CDS |
GTCAACAATGCTATTGCATT+TGG | 0.284967 | 2:+17977840 | MsaT007433.1:CDS |
GCGCGGAGAGCATCGTTATC+TGG | 0.316509 | 2:-17976445 | None:intergenic |
GTGGCTCAAGCTCAAGCTCC+TGG | 0.323796 | 2:-17976252 | None:intergenic |
CCACTATGTATCAATTATTC+AGG | 0.339498 | 2:+17978507 | MsaT007433.1:CDS |
TGATGATTCAACATGTGTTT+TGG | 0.340849 | 2:-17977027 | None:intergenic |
GTCTCTTTCAAGCACTTTGA+TGG | 0.342907 | 2:-17977343 | None:intergenic |
AAGTTCCATGAGCCATCTTT+GGG | 0.351674 | 2:-17977865 | None:intergenic |
AGAATGTTTCATAGACCCTT+TGG | 0.370185 | 2:+17979259 | MsaT007433.1:CDS |
TGAACCTCAAAACGTCTTGC+CGG | 0.371480 | 2:-17978326 | None:intergenic |
TAATAGTTTGAAACAACTTC+AGG | 0.374417 | 2:+17976549 | MsaT007433.1:CDS |
GGTCGACATGTTTCTGGATT+CGG | 0.374726 | 2:+17977088 | MsaT007433.1:CDS |
TCAGCTTTGCTAACAATAGT+TGG | 0.380163 | 2:-17977318 | None:intergenic |
AACATGCTCTACTTAATTAG+TGG | 0.387024 | 2:+17979546 | MsaT007433.1:CDS |
AAGCTCCACTTTGACTTTCT+GGG | 0.391206 | 2:-17977368 | None:intergenic |
CTCATGGAACTTCAAAGAAT+TGG | 0.391578 | 2:+17977876 | MsaT007433.1:CDS |
TTTCCGCGATGAGTCCTTAT+GGG | 0.399067 | 2:+17976920 | MsaT007433.1:CDS |
AATTCCCGTGGTTTCACTAA+AGG | 0.399551 | 2:-17977506 | None:intergenic |
AGTCCAGCCACCAACATCAT+TGG | 0.401935 | 2:-17976870 | None:intergenic |
ATTACACATCTCCTTCCTTC+AGG | 0.404458 | 2:-17978080 | None:intergenic |
ATGCTGATGACAGCGGGGTT+AGG | 0.405153 | 2:+17978186 | MsaT007433.1:CDS |
ATAATCTTCACACCATCTTT+GGG | 0.405420 | 2:-17979233 | None:intergenic |
GAAAATTGGAGCAAGACATT+TGG | 0.407628 | 2:+17977067 | MsaT007433.1:CDS |
GAAAGAGAACATGGAAATGA+AGG | 0.408587 | 2:+17976486 | MsaT007433.1:CDS |
AAACACACAAGAGTTGAATA+TGG | 0.410220 | 2:+17979307 | MsaT007433.1:CDS |
TATTAGGATCATTACATGAT+TGG | 0.413021 | 2:-17976531 | None:intergenic |
GAATGTTTCATAGACCCTTT+GGG | 0.421156 | 2:+17979260 | MsaT007433.1:CDS |
AAACAAAAGAGCACAGGTTA+AGG | 0.425246 | 2:+17976297 | MsaT007433.1:CDS |
ACTTGCACATCAGGTTGTTA+AGG | 0.426416 | 2:+17978106 | MsaT007433.1:CDS |
TGTAATGAAACTTGCACATC+AGG | 0.446823 | 2:+17978097 | MsaT007433.1:CDS |
GTCCAGCCACCAACATCATT+GGG | 0.447296 | 2:-17976869 | None:intergenic |
CTCTTATGATTACTTGAAAG+AGG | 0.447977 | 2:+17977586 | MsaT007433.1:CDS |
CACTGTCAGCAACGAACCTC+TGG | 0.459310 | 2:-17979426 | None:intergenic |
TTAAAGTAGTGGTCAACTCT+AGG | 0.461640 | 2:-17976999 | None:intergenic |
AAAATGAACGTCTCAAAGAA+AGG | 0.465144 | 2:+17976575 | MsaT007433.1:CDS |
TTGCTGATGCTGATGACAGC+GGG | 0.466069 | 2:+17978180 | MsaT007433.1:CDS |
TTTCGACTTCTTAAGAGATC+CGG | 0.468769 | 2:+17978307 | MsaT007433.1:CDS |
AACCACCACTTCACTTGTTG+TGG | 0.474712 | 2:-17976271 | None:intergenic |
GAAATTGCACACATCTCTAC+TGG | 0.475230 | 2:+17978472 | MsaT007433.1:CDS |
GAAATCCACTTCCAAGGTCC+AGG | 0.477187 | 2:+17976727 | MsaT007433.1:CDS |
GTGTCACTTATAATTCCATC+AGG | 0.478904 | 2:+17979356 | MsaT007433.1:CDS |
CTAGCAACAATAACAATGAA+TGG | 0.482675 | 2:-17978251 | None:intergenic |
TTGCATTTGGAGCCCAAAGA+TGG | 0.489863 | 2:+17977853 | MsaT007433.1:CDS |
TGAGCCTCTATCTAGATTCA+AGG | 0.490503 | 2:-17976817 | None:intergenic |
TATGATTACTTGAAAGAGGA+TGG | 0.498521 | 2:+17977590 | MsaT007433.1:CDS |
GTGACACATTTGATAAATCA+TGG | 0.499449 | 2:-17979340 | None:intergenic |
AATAATTGATACATAGTGGT+TGG | 0.500783 | 2:-17978503 | None:intergenic |
CTAGTTTCTCCTCCCAAAGA+TGG | 0.503991 | 2:+17979221 | MsaT007433.1:CDS |
ACCTCCTTGAATCTAGATAG+AGG | 0.506046 | 2:+17976813 | MsaT007433.1:CDS |
GATTCAAAATTTGCAACAAG+AGG | 0.507082 | 2:-17979473 | None:intergenic |
TTGGATTGAGCATGTGGAAG+TGG | 0.507994 | 2:+17977779 | MsaT007433.1:CDS |
TAGCAACAATAACAATGAAT+GGG | 0.509698 | 2:-17978250 | None:intergenic |
AAATTTGCAACAAGAGGACT+AGG | 0.517166 | 2:-17979467 | None:intergenic |
CCTGAATAATTGATACATAG+TGG | 0.522975 | 2:-17978507 | None:intergenic |
TATCTTGTTCATCACCTGAT+AGG | 0.523640 | 2:-17974399 | None:intergenic |
ATCATCAAAAGATTCACAAA+TGG | 0.526011 | 2:+17977043 | MsaT007433.1:CDS |
TGGCTCAAGCTCAAGCTCCT+GGG | 0.527865 | 2:-17976251 | None:intergenic |
AACCCAATGATGTTGGTGGC+TGG | 0.530454 | 2:+17976867 | MsaT007433.1:CDS |
TAAAGTAGTGGTCAACTCTA+GGG | 0.531595 | 2:-17976998 | None:intergenic |
AAGCTGAGACTTAACCCATA+AGG | 0.535338 | 2:-17976934 | None:intergenic |
TGGAGCCCAAAGATGGCTCA+TGG | 0.538769 | 2:+17977860 | MsaT007433.1:CDS |
AAATGAACGTCTCAAAGAAA+GGG | 0.541119 | 2:+17976576 | MsaT007433.1:CDS |
AGCTCCACTTTGACTTTCTG+GGG | 0.544796 | 2:-17977367 | None:intergenic |
CTCTCCGCGCTGAAAATGAA+AGG | 0.545522 | 2:+17976458 | MsaT007433.1:CDS |
TACAAGTTGAAGCTGGTATG+TGG | 0.546205 | 2:+17977549 | MsaT007433.1:CDS |
AGTCGAAAACAATATGAGAC+GGG | 0.556073 | 2:-17978292 | None:intergenic |
GGTTTCTTGGATTGAGCATG+TGG | 0.560486 | 2:+17977773 | MsaT007433.1:intron |
ATAATTGATACATAGTGGTT+GGG | 0.560512 | 2:-17978502 | None:intergenic |
AATACAAAACCCAATGATGT+TGG | 0.560670 | 2:+17976860 | MsaT007433.1:CDS |
ATGTGTGCAATTTCATGCCA+TGG | 0.566418 | 2:-17978463 | None:intergenic |
GAGTTGAATATGGCAATGAA+TGG | 0.573412 | 2:+17979317 | MsaT007433.1:CDS |
AATATCTAATGAGACTTCCA+AGG | 0.574407 | 2:+17977661 | MsaT007433.1:CDS |
GACTCCCCAGAAAGTCAAAG+TGG | 0.577198 | 2:+17977363 | MsaT007433.1:CDS |
TTATGCTACGTACAGATGCA+TGG | 0.588414 | 2:+17977464 | MsaT007433.1:intron |
AAGTCGAAAACAATATGAGA+CGG | 0.588442 | 2:-17978293 | None:intergenic |
GGTGGCTGGACTTGCCGCCA+CGG | 0.591534 | 2:+17976881 | MsaT007433.1:CDS |
GTTTCAAAACAAAAGAGCAC+AGG | 0.592799 | 2:+17976291 | MsaT007433.1:CDS |
CAGAGGTTCGTTGCTGACAG+TGG | 0.595573 | 2:+17979427 | MsaT007433.1:CDS |
AAACAACATAGGATCCCAAA+GGG | 0.596630 | 2:-17979274 | None:intergenic |
AGCCACAACAAGTGAAGTGG+TGG | 0.600152 | 2:+17976269 | MsaT007433.1:CDS |
TGATGGGAAATCCACTTCCA+AGG | 0.605524 | 2:+17976721 | MsaT007433.1:CDS |
TATTGCGTACAAGTTGAAGC+TGG | 0.606947 | 2:+17977542 | MsaT007433.1:CDS |
AAAACAATATGAGACGGGAG+AGG | 0.618201 | 2:-17978287 | None:intergenic |
TCAGTGGTTACATTACCTGA+AGG | 0.618247 | 2:+17978065 | MsaT007433.1:intron |
TTCACCTTTAGTGAAACCAC+GGG | 0.619254 | 2:+17977502 | MsaT007433.1:CDS |
AAATCCACTTCCAAGGTCCA+GGG | 0.620783 | 2:+17976728 | MsaT007433.1:CDS |
ATCTTCACACCATCTTTGGG+AGG | 0.621836 | 2:-17979230 | None:intergenic |
TACAGGAGAATAAACAACAT+AGG | 0.623592 | 2:-17979285 | None:intergenic |
CGAAGAAAGTAAAATTCCCG+TGG | 0.624894 | 2:-17977518 | None:intergenic |
TGGTTACATTACCTGAAGGA+AGG | 0.625611 | 2:+17978069 | MsaT007433.1:CDS |
CTTCCTAAAAGCTCGACACG+TGG | 0.628257 | 2:+17976786 | MsaT007433.1:CDS |
AAGCTTAAGCAACTCTTCCG+TGG | 0.628294 | 2:-17976898 | None:intergenic |
TTGAGCCACAACAAGTGAAG+TGG | 0.628334 | 2:+17976266 | MsaT007433.1:CDS |
TAAACAACATAGGATCCCAA+AGG | 0.631648 | 2:-17979275 | None:intergenic |
TCAGCATCAGCAAAGTATTG+TGG | 0.632074 | 2:-17978170 | None:intergenic |
TTTCACCTTTAGTGAAACCA+CGG | 0.633802 | 2:+17977501 | MsaT007433.1:CDS |
ACAAAACCCAATGATGTTGG+TGG | 0.641799 | 2:+17976863 | MsaT007433.1:CDS |
TCAAAAGATAGTAAATCCAG+AGG | 0.643636 | 2:+17979410 | MsaT007433.1:CDS |
AGACGGGAGAGGTATCAAAA+CGG | 0.645863 | 2:-17978276 | None:intergenic |
ACAAGTTGAAGCTGGTATGT+GGG | 0.664498 | 2:+17977550 | MsaT007433.1:CDS |
TTTGCTGATGCTGATGACAG+CGG | 0.677579 | 2:+17978179 | MsaT007433.1:CDS |
TGCTGATGCTGATGACAGCG+GGG | 0.703574 | 2:+17978181 | MsaT007433.1:CDS |
GCCTCTATCTAGATTCAAGG+AGG | 0.723251 | 2:-17976814 | None:intergenic |
CTTAAGCAACTCTTCCGTGG+CGG | 0.730831 | 2:-17976895 | None:intergenic |
TCTTTGGGAGGAGAAACTAG+AGG | 0.742226 | 2:-17979218 | None:intergenic |
TAACCCATAAGGACTCATCG+CGG | 0.774250 | 2:-17976923 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 17974394 | 17979565 | 17974394 | ID=MsaG007433 |
Chr2 | mRNA | 17974394 | 17979565 | 17974394 | ID=MsaT007433.1;Parent=MsaG007433 |
Chr2 | exon | 17974394 | 17974488 | 17974394 | ID=MsaT007433.1.exon1;Parent=MsaT007433.1 |
Chr2 | CDS | 17974394 | 17974488 | 17974394 | ID=cds.MsaT007433.1;Parent=MsaT007433.1 |
Chr2 | exon | 17976201 | 17976318 | 17976201 | ID=MsaT007433.1.exon2;Parent=MsaT007433.1 |
Chr2 | CDS | 17976201 | 17976318 | 17976201 | ID=cds.MsaT007433.1;Parent=MsaT007433.1 |
Chr2 | exon | 17976430 | 17976597 | 17976430 | ID=MsaT007433.1.exon3;Parent=MsaT007433.1 |
Chr2 | CDS | 17976430 | 17976597 | 17976430 | ID=cds.MsaT007433.1;Parent=MsaT007433.1 |
Chr2 | exon | 17976714 | 17977109 | 17976714 | ID=MsaT007433.1.exon4;Parent=MsaT007433.1 |
Chr2 | CDS | 17976714 | 17977109 | 17976714 | ID=cds.MsaT007433.1;Parent=MsaT007433.1 |
Chr2 | exon | 17977297 | 17977398 | 17977297 | ID=MsaT007433.1.exon5;Parent=MsaT007433.1 |
Chr2 | CDS | 17977297 | 17977398 | 17977297 | ID=cds.MsaT007433.1;Parent=MsaT007433.1 |
Chr2 | exon | 17977479 | 17977682 | 17977479 | ID=MsaT007433.1.exon6;Parent=MsaT007433.1 |
Chr2 | CDS | 17977479 | 17977682 | 17977479 | ID=cds.MsaT007433.1;Parent=MsaT007433.1 |
Chr2 | exon | 17977774 | 17977951 | 17977774 | ID=MsaT007433.1.exon7;Parent=MsaT007433.1 |
Chr2 | CDS | 17977774 | 17977951 | 17977774 | ID=cds.MsaT007433.1;Parent=MsaT007433.1 |
Chr2 | exon | 17978069 | 17978343 | 17978069 | ID=MsaT007433.1.exon8;Parent=MsaT007433.1 |
Chr2 | CDS | 17978069 | 17978343 | 17978069 | ID=cds.MsaT007433.1;Parent=MsaT007433.1 |
Chr2 | exon | 17978439 | 17978528 | 17978439 | ID=MsaT007433.1.exon9;Parent=MsaT007433.1 |
Chr2 | CDS | 17978439 | 17978528 | 17978439 | ID=cds.MsaT007433.1;Parent=MsaT007433.1 |
Chr2 | exon | 17979218 | 17979565 | 17979218 | ID=MsaT007433.1.exon10;Parent=MsaT007433.1 |
Chr2 | CDS | 17979218 | 17979565 | 17979218 | ID=cds.MsaT007433.1;Parent=MsaT007433.1 |
Gene Sequence |
Protein sequence |