AlfalfaGEDB | MsaG007433

M. sativa ssp. caerulea / MsaG007433

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007433	AES64817.2	90.881	658	50	3	1	657	1	649	0.0	1222

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007433	sp\|Q9FX31\|HDG11_ARATH	36.087	690	380	17	17	655	34	713	3.30e-133	411

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007433	tr\|G7IKY6\|G7IKY6_MEDTR	90.881	658	50	3	1	657	1	649	0.0	1222

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TFs/TRs:

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Gene ID	Type	Classification
MsaG007433	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007433	MtrunA17_Chr2g0292761	88.319	565	42	4	94	657	1	542	0.0	1004
MsaG007433	MtrunA17_Chr6g0481041	35.684	709	390	16	7	655	21	723	6.08e-141	428
MsaG007433	MtrunA17_Chr2g0292731	41.700	506	274	12	168	657	50	550	3.26e-118	363
MsaG007433	MtrunA17_Chr4g0024351	33.962	689	408	16	4	655	51	729	2.62e-112	354
MsaG007433	MtrunA17_Chr2g0292741	40.637	502	280	13	168	657	42	537	9.55e-112	347
MsaG007433	MtrunA17_Chr8g0350321	33.380	716	403	22	3	655	102	806	7.31e-110	350
MsaG007433	MtrunA17_Chr5g0410711	33.475	708	400	21	2	647	73	771	1.36e-109	348
MsaG007433	MtrunA17_Chr2g0322731	33.824	680	411	14	8	655	93	765	1.63e-109	348
MsaG007433	MtrunA17_Chr7g0246631	33.001	703	415	20	3	655	78	774	2.67e-109	347
MsaG007433	MtrunA17_Chr1g0203671	32.766	705	396	20	17	655	97	789	2.24e-99	322

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007433	AT1G73360.1	36.087	690	380	17	17	655	34	713	3.35e-134	411
MsaG007433	AT3G03260.1	38.177	702	371	23	4	657	9	695	3.72e-130	400
MsaG007433	AT1G17920.2	35.714	700	386	19	1	655	1	681	2.03e-125	387
MsaG007433	AT1G17920.1	35.714	700	386	19	1	655	1	681	2.03e-125	387
MsaG007433	AT5G17320.1	35.873	722	382	23	2	655	7	715	1.34e-120	375
MsaG007433	AT1G34650.1	36.561	692	375	17	22	657	23	706	4.09e-116	363
MsaG007433	AT1G05230.3	35.059	676	401	16	4	655	53	714	8.18e-115	360
MsaG007433	AT1G05230.8	34.860	677	403	16	4	655	53	716	4.57e-114	358
MsaG007433	AT1G05230.4	34.860	677	403	16	4	655	53	716	4.57e-114	358
MsaG007433	AT1G05230.9	34.860	677	403	16	4	655	53	716	4.57e-114	358

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Find 114 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATATGAGACGGGAG+AGG	0.618201	2:-17978287	None:intergenic
AAAATGAACGTCTCAAAGAA+AGG	0.465144	2:+17976575	MsaT007433.1:CDS
AAACAAAAGAGCACAGGTTA+AGG	0.425246	2:+17976297	MsaT007433.1:CDS
AAACAACATAGGATCCCAAA+GGG	0.596630	2:-17979274	None:intergenic
AAACACACAAGAGTTGAATA+TGG	0.410220	2:+17979307	MsaT007433.1:CDS
AAAGCTCCACTTTGACTTTC+TGG	0.209562	2:-17977369	None:intergenic
AAATCCACTTCCAAGGTCCA+GGG	0.620783	2:+17976728	MsaT007433.1:CDS
AAATGAACGTCTCAAAGAAA+GGG	0.541119	2:+17976576	MsaT007433.1:CDS
AAATTTGCAACAAGAGGACT+AGG	0.517166	2:-17979467	None:intergenic
AACATGCTCTACTTAATTAG+TGG	0.387024	2:+17979546	MsaT007433.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	17974394	17979565	17974394	ID=MsaG007433
Chr2	mRNA	17974394	17979565	17974394	ID=MsaT007433.1;Parent=MsaG007433
Chr2	exon	17974394	17974488	17974394	ID=MsaT007433.1.exon1;Parent=MsaT007433.1
Chr2	CDS	17974394	17974488	17974394	ID=cds.MsaT007433.1;Parent=MsaT007433.1
Chr2	exon	17976201	17976318	17976201	ID=MsaT007433.1.exon2;Parent=MsaT007433.1
Chr2	CDS	17976201	17976318	17976201	ID=cds.MsaT007433.1;Parent=MsaT007433.1
Chr2	exon	17976430	17976597	17976430	ID=MsaT007433.1.exon3;Parent=MsaT007433.1
Chr2	CDS	17976430	17976597	17976430	ID=cds.MsaT007433.1;Parent=MsaT007433.1
Chr2	exon	17976714	17977109	17976714	ID=MsaT007433.1.exon4;Parent=MsaT007433.1
Chr2	CDS	17976714	17977109	17976714	ID=cds.MsaT007433.1;Parent=MsaT007433.1
Chr2	exon	17977297	17977398	17977297	ID=MsaT007433.1.exon5;Parent=MsaT007433.1
Chr2	CDS	17977297	17977398	17977297	ID=cds.MsaT007433.1;Parent=MsaT007433.1
Chr2	exon	17977479	17977682	17977479	ID=MsaT007433.1.exon6;Parent=MsaT007433.1
Chr2	CDS	17977479	17977682	17977479	ID=cds.MsaT007433.1;Parent=MsaT007433.1
Chr2	exon	17977774	17977951	17977774	ID=MsaT007433.1.exon7;Parent=MsaT007433.1
Chr2	CDS	17977774	17977951	17977774	ID=cds.MsaT007433.1;Parent=MsaT007433.1
Chr2	exon	17978069	17978343	17978069	ID=MsaT007433.1.exon8;Parent=MsaT007433.1
Chr2	CDS	17978069	17978343	17978069	ID=cds.MsaT007433.1;Parent=MsaT007433.1
Chr2	exon	17978439	17978528	17978439	ID=MsaT007433.1.exon9;Parent=MsaT007433.1
Chr2	CDS	17978439	17978528	17978439	ID=cds.MsaT007433.1;Parent=MsaT007433.1
Chr2	exon	17979218	17979565	17979218	ID=MsaT007433.1.exon10;Parent=MsaT007433.1
Chr2	CDS	17979218	17979565	17979218	ID=cds.MsaT007433.1;Parent=MsaT007433.1

Gene Sequence

>MsaT007433.1

ATGGACCTATCAGGTGATGAACAAGATAGCGACAACTCAAATGAATCAAAAAGAGTCTGTCGACATTCTGCTGATCAAATACTTAAGCTTGAAGAAATATTCAAAACGCTTACACATCCAGATGATAACCAAAAATATCAAATAGCCCAGGAGCTTGAGCTTGAGCCACAACAAGTGAAGTGGTGGTTTCAAAACAAAAGAGCACAGGTTAAGAACAAAAATTTAAAACCAGATAACGATGCTCTCCGCGCTGAAAATGAAAGGATTTTGAAAGAGAACATGGAAATGAAGGAGAGACTGAAGAATTTATTGTGCCAATCATGTAATGATCCTAATAGTTTGAAACAACTTCAGGTTGAAAATGAACGTCTCAAAGAAAGGTATGAGATGATGGGAAATCCACTTCCAAGGTCCAGGGAAAAAGAGGAAGTATCATTAGCACTAAAGTTAGCTCTTCCTAAAAGCTCGACACGTGGAAGCACCTCCTTGAATCTAGATAGAGGCTCAAGTTCAAAGAGTTCTTTAGAAATACAAAACCCAATGATGTTGGTGGCTGGACTTGCCGCCACGGAAGAGTTGCTTAAGCTTTTCCGCGATGAGTCCTTATGGGTTAAGTCTCAGCTTAATCGAAGACTTGTTCTTCAAAAAAACTATGAAGACATCTTCCCTAGAGTTGACCACTACTTTAATGGCGCCAAAACACATGTTGAATCATCAAAAGATTCACAAATGGTGAAAATTGGAGCAAGACATTTGGTCGACATGTTTCTGGATTCGGAAAAATGGGCAAATCTTTTTCCAACTATTGTTAGCAAAGCTGAGACCATCAAAGTGCTTGAAAGAGACTCCCCAGAAAGTCAAAGTGGAGCTTTGTTATTGATGCATGGAGAGATGCATGTTCTTTCACCTTTAGTGAAACCACGGGAATTTTACTTTCTTCGCTATTGCGTACAAGTTGAAGCTGGTATGTGGGTGATTGCTGATGTCTCTTATGATTACTTGAAAGAGGATGGACCTCATTCTTCTTTTTGGAGGTTTCCTTCTGGATGTTTGATTCAAAAAATATCTAATGAGACTTCCAAGGTTTCTTGGATTGAGCATGTGGAAGTGGATTTGAAGATTCAAACACATAGTATGTATAGAGATATTGTCAACAATGCTATTGCATTTGGAGCCCAAAGATGGCTCATGGAACTTCAAAGAATTGGTGAAAGATGTAGTAGTGCTGCACTTGAATACAATCATTTTTATGACAATGGAGTGGTTACATTACCTGAAGGAAGGAGATGTGTAATGAAACTTGCACATCAGGTTGTTAAGGAGTTCAGTAAAAATTTAACAATGTCAAGCAAATCAGATTTACCACAATACTTTGCTGATGCTGATGACAGCGGGGTTAGGTTTTCGATTCGAAAAAATAGAAACTTATTTCTGTCAAATGACCCATTCATTGTTATTGTTGCTAGCTCCGTTTTGATACCTCTCCCGTCTCATATTGTTTTCGACTTCTTAAGAGATCCGGCAAGACGTTTTGAGTGGGATACGTTTTGTGATGGAAATCCATGGCATGAAATTGCACACATCTCTACTGGAACTCATCCCAACCACTATGTATCAATTATTCAGCCTCTAGTTTCTCCTCCCAAAGATGGTGTGAAGATTATTCAAGAATGTTTCATAGACCCTTTGGGATCCTATGTTGTTTATTCTCCTGTAAACACACAAGAGTTGAATATGGCAATGAATGGCCATGATTTATCAAATGTGTCACTTATAATTCCATCAGGCTTTTTCATCTCTGAAGATAGTAAATCTCTTTCAAAAGATAGTAAATCCAGAGGTTCGTTGCTGACAGTGGCTTTTGAAATGCACATGCCTAGTCCTCTTGTTGCAAATTTTGAATCTGTAGCTGAAGCTTCAAATGCACTCATGACAACAGTAGTTAAAAGCATAAAACATGCTCTACTTAATTAG

Protein sequence

>MsaT007433.1

MDLSGDEQDSDNSNESKRVCRHSADQILKLEEIFKTLTHPDDNQKYQIAQELELEPQQVKWWFQNKRAQVKNKNLKPDNDALRAENERILKENMEMKERLKNLLCQSCNDPNSLKQLQVENERLKERYEMMGNPLPRSREKEEVSLALKLALPKSSTRGSTSLNLDRGSSSKSSLEIQNPMMLVAGLAATEELLKLFRDESLWVKSQLNRRLVLQKNYEDIFPRVDHYFNGAKTHVESSKDSQMVKIGARHLVDMFLDSEKWANLFPTIVSKAETIKVLERDSPESQSGALLLMHGEMHVLSPLVKPREFYFLRYCVQVEAGMWVIADVSYDYLKEDGPHSSFWRFPSGCLIQKISNETSKVSWIEHVEVDLKIQTHSMYRDIVNNAIAFGAQRWLMELQRIGERCSSAALEYNHFYDNGVVTLPEGRRCVMKLAHQVVKEFSKNLTMSSKSDLPQYFADADDSGVRFSIRKNRNLFLSNDPFIVIVASSVLIPLPSHIVFDFLRDPARRFEWDTFCDGNPWHEIAHISTGTHPNHYVSIIQPLVSPPKDGVKIIQECFIDPLGSYVVYSPVNTQELNMAMNGHDLSNVSLIIPSGFFISEDSKSLSKDSKSRGSLLTVAFEMHMPSPLVANFESVAEASNALMTTVVKSIKHALLN*