AlfalfaGEDB | MsaG007434

M. sativa ssp. caerulea / MsaG007434

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007434	AES64821.1	83.750	160	19	1	1	153	1	160	8.23e-88	263

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007434	sp\|Q6ZAR0\|ROC1_ORYSJ	34.127	126	74	2	10	126	105	230	2.80e-16	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007434	tr\|G7IMI5\|G7IMI5_MEDTR	83.750	160	19	1	1	153	1	160	3.93e-88	263

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TFs/TRs:

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Gene ID	Type	Classification
MsaG007434	TF	HB-other

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000070	MsaG007434	0.826124	5.733057e-54	1.487746e-51
MsaG000113	MsaG007434	0.823234	2.729110e-53	6.543121e-51
MsaG000127	MsaG007434	0.813433	4.422946e-51	8.220029e-49
MsaG000140	MsaG007434	0.859422	8.201603e-63	6.238237e-60
MsaG000164	MsaG007434	0.848815	9.136286e-60	4.755338e-57
MsaG000224	MsaG007434	0.806808	1.165619e-49	1.843758e-47
MsaG000262	MsaG007434	0.838299	5.743153e-57	2.125901e-54
MsaG000292	MsaG007434	0.842401	4.919476e-58	2.072271e-55
MsaG000314	MsaG007434	0.829858	7.307300e-55	2.106292e-52
MsaG000323	MsaG007434	0.832986	1.251858e-55	3.950169e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007434	MtrunA17_Chr2g0292781	80.682	88	14	1	66	153	2	86	3.77e-43	137
MsaG007434	MtrunA17_Chr4g0024351	31.818	154	92	4	10	150	59	212	1.65e-16	75.5
MsaG007434	MtrunA17_Chr7g0224481	33.884	121	69	4	17	131	22	137	4.28e-14	68.2
MsaG007434	MtrunA17_Chr7g0224451	35.537	121	67	5	17	131	22	137	6.07e-14	67.8
MsaG007434	MtrunA17_Chr2g0322731	32.117	137	81	3	15	139	104	240	8.01e-14	67.8
MsaG007434	MtrunA17_Chr1g0203671	29.932	147	89	4	15	148	99	244	1.59e-13	67.0
MsaG007434	MtrunA17_Chr2g0331581	31.148	122	73	3	15	125	143	264	5.96e-13	65.1
MsaG007434	MtrunA17_Chr6g0481041	33.588	131	71	4	15	131	33	161	6.19e-13	65.1
MsaG007434	MtrunA17_Chr6g0472471	30.328	122	74	3	15	126	73	193	7.34e-13	65.1
MsaG007434	MtrunA17_Chr5g0410711	31.405	121	73	2	15	125	93	213	1.39e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007434	AT1G05230.8	34.058	138	79	3	7	132	60	197	6.36e-16	74.3
MsaG007434	AT1G05230.4	34.058	138	79	3	7	132	60	197	6.36e-16	74.3
MsaG007434	AT1G05230.9	34.058	138	79	3	7	132	60	197	6.36e-16	74.3
MsaG007434	AT1G05230.10	34.058	138	79	3	7	132	60	197	6.36e-16	74.3
MsaG007434	AT1G05230.7	34.058	138	79	3	7	132	60	197	6.36e-16	74.3
MsaG007434	AT1G05230.11	34.058	138	79	3	7	132	60	197	6.36e-16	74.3
MsaG007434	AT1G05230.2	34.058	138	79	3	7	132	60	197	6.36e-16	74.3
MsaG007434	AT1G05230.6	34.058	138	79	3	7	132	60	197	6.36e-16	74.3
MsaG007434	AT1G05230.5	34.058	138	79	3	7	132	60	197	6.36e-16	74.3
MsaG007434	AT1G05230.1	34.058	138	79	3	7	132	60	197	6.36e-16	74.3

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Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAATCCAAGCTACG+TGG	0.657189	2:+18004479	MsaT007434.1:CDS
AAATGCATTTGGAAGCGAAA+AGG	0.450705	2:+18004232	MsaT007434.1:CDS
AAATTGAATCCAAGCTACGT+GGG	0.714001	2:+18004480	MsaT007434.1:CDS
AACCACCAGTTCACTTGTTT+TGG	0.280631	2:-18004029	None:intergenic
AACGTGAATCACGGCATGCT+TGG	0.497561	2:-18004284	None:intergenic
AATGCATTTGGAAGCGAAAA+GGG	0.449227	2:+18004233	MsaT007434.1:CDS
AGCCAAAACAAGTGAACTGG+TGG	0.610770	2:+18004027	MsaT007434.1:CDS
AGCTGAAATTCAAATGCATT+TGG	0.349094	2:+18004221	MsaT007434.1:CDS
AGTGAAATAGCCGAAGAGCT+TGG	0.563271	2:+18003999	MsaT007434.1:CDS
ATACAAAAGAGCTCAAGTTA+AGG	0.476145	2:+18004055	MsaT007434.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	18001814	18004572	18001814	ID=MsaG007434
Chr2	mRNA	18001814	18004572	18001814	ID=MsaT007434.1;Parent=MsaG007434
Chr2	exon	18001814	18001896	18001814	ID=MsaT007434.1.exon1;Parent=MsaT007434.1
Chr2	CDS	18001814	18001896	18001814	ID=cds.MsaT007434.1;Parent=MsaT007434.1
Chr2	exon	18003959	18004076	18003959	ID=MsaT007434.1.exon2;Parent=MsaT007434.1
Chr2	CDS	18003959	18004076	18003959	ID=cds.MsaT007434.1;Parent=MsaT007434.1
Chr2	exon	18004186	18004347	18004186	ID=MsaT007434.1.exon3;Parent=MsaT007434.1
Chr2	CDS	18004186	18004347	18004186	ID=cds.MsaT007434.1;Parent=MsaT007434.1
Chr2	exon	18004474	18004572	18004474	ID=MsaT007434.1.exon4;Parent=MsaT007434.1
Chr2	CDS	18004474	18004572	18004474	ID=cds.MsaT007434.1;Parent=MsaT007434.1

Gene Sequence

>MsaT007434.1

ATGGACTTAACTTTGAGATTAGCGCCACCTAAAAATGGAGCTTTTCCTCGTCATTCTGCTGCTCAAAGATCTAGGCTCGAAGAAATATTTCAAACTCTCAAATATCCAACTCATAAGCAAAAAAGTGAAATAGCCGAAGAGCTTGGTCTTGAGCCAAAACAAGTGAACTGGTGGTTTACATACAAAAGAGCTCAAGTTAAGAATGCTACTCAAAAGGAAGTTAACGCTGCTCTTCGAGCTGAAATTCAAATGCATTTGGAAGCGAAAAGGGAAATGGAGAGACAAAATAGTGTATCTTGCCAAGCATGCCGTGATTCACGTTTGAAACAACTTCGGCTTGAAAATGAACTTTTGAAAGAAAAGCTGTCAAAATTGAATCCAAGCTACGTGGGAGAAGAGGAACTCTCACTGGAGTTGAAGTTAGGTCTTCCCGAAAGATCATCAGATGGAACCTATCTTTAG

Protein sequence

>MsaT007434.1

MDLTLRLAPPKNGAFPRHSAAQRSRLEEIFQTLKYPTHKQKSEIAEELGLEPKQVNWWFTYKRAQVKNATQKEVNAALRAEIQMHLEAKREMERQNSVSCQACRDSRLKQLRLENELLKEKLSKLNPSYVGEEELSLELKLGLPERSSDGTYL*