AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG007435

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG007435 MtrunA17_Chr8g0355091 89.873 237 24 0 1 237 1 237 2.13e-160 443
MsaG007435 MtrunA17_Chr1g0206721 92.237 219 17 0 1 219 1 219 6.14e-153 424
MsaG007435 MtrunA17_Chr1g0206701 89.873 237 24 0 1 237 1 237 1.25e-152 424
MsaG007435 MtrunA17_Chr2g0292791 90.717 237 22 0 1 237 1 237 5.27e-150 417
MsaG007435 MtrunA17_Chr1g0149391 89.451 237 25 0 1 237 1 237 1.06e-146 409
MsaG007435 MtrunA17_Chr3g0099421 87.671 219 27 0 1 219 26 244 7.14e-145 405
MsaG007435 MtrunA17_Chr1g0206691 83.182 220 37 0 18 237 1 220 5.78e-137 383
MsaG007435 MtrunA17_Chr3g0099411 82.192 219 20 1 1 219 1 200 1.26e-128 362
MsaG007435 MtrunA17_Chr3g0089141 75.745 235 39 3 1 225 1 227 4.38e-125 353
MsaG007435 MtrunA17_Chr1g0208561 75.745 235 39 3 1 225 1 227 1.63e-124 352
MsaG007435 MtrunA17_Chr2g0300441 72.574 237 64 1 1 237 1 236 1.01e-123 350
MsaG007435 MtrunA17_Chr5g0422941 67.932 237 76 0 1 237 1 237 1.83e-121 345
MsaG007435 MtrunA17_Chr2g0317451 68.220 236 75 0 1 236 1 236 4.63e-121 343
MsaG007435 MtrunA17_Chr1g0188671 72.000 225 63 0 1 225 39 263 4.99e-121 345
MsaG007435 MtrunA17_Chr2g0325971 74.468 235 42 3 1 225 1 227 1.06e-120 342
MsaG007435 MtrunA17_Chr2g0317481 68.220 236 75 0 1 236 1 236 1.15e-120 343
MsaG007435 MtrunA17_Chr1g0206991 90.110 182 18 0 1 182 1 182 2.92e-120 340
MsaG007435 MtrunA17_Chr1g0187361 72.000 225 63 0 1 225 1 225 8.44e-120 340
MsaG007435 MtrunA17_Chr5g0419601 71.730 237 67 0 1 237 1 237 1.93e-118 337
MsaG007435 MtrunA17_Chr1g0208581 72.340 235 47 3 1 225 1 227 5.08e-117 333
MsaG007435 MtrunA17_Chr5g0422421 69.333 225 69 0 1 225 1 225 4.64e-114 326
MsaG007435 MtrunA17_Chr7g0238991 67.265 223 71 2 16 237 27 248 2.35e-103 299
MsaG007435 MtrunA17_Chr3g0085241 52.910 189 79 1 3 191 35 213 2.66e-68 210
MsaG007435 MtrunA17_Chr2g0300421 78.906 128 27 0 1 128 1 128 9.21e-68 206
MsaG007435 MtrunA17_Chr3g0119901 53.514 185 76 1 7 191 7 181 2.47e-66 204
MsaG007435 MtrunA17_Chr3g0089151 75.194 129 32 0 1 129 1 129 5.99e-65 197
MsaG007435 MtrunA17_Chr3g0111931 68.627 102 32 0 21 122 2 103 2.18e-46 150
MsaG007435 MtrunA17_Chr2g0333981 39.766 171 93 2 5 172 8 171 8.59e-41 137
MsaG007435 MtrunA17_Chr8g0379021 41.566 166 87 2 5 167 8 166 2.26e-40 137
MsaG007435 MtrunA17_Chr4g0018951 45.161 155 73 3 5 159 8 150 7.06e-35 122
MsaG007435 MtrunA17_Chr1g0187351 83.333 66 11 0 18 83 1 66 5.85e-34 117
MsaG007435 MtrunA17_Chr4g0071601 37.500 184 95 4 5 175 8 184 4.89e-31 113
MsaG007435 MtrunA17_Chr3g0111841 84.746 59 9 0 15 73 2 60 8.27e-30 106
MsaG007435 MtrunA17_Chr1g0175601 46.847 111 56 2 9 118 2 110 1.32e-25 99.0
MsaG007435 MtrunA17_Chr1g0169761 62.319 69 26 0 9 77 2 70 8.99e-25 96.7
MsaG007435 MtrunA17_Chr8g0376821 62.319 69 26 0 9 77 2 70 2.00e-24 95.9
MsaG007435 MtrunA17_Chr3g0111831 70.492 61 18 0 16 76 11 71 2.86e-24 92.4
MsaG007435 MtrunA17_Chr4g0074101 40.517 116 54 2 9 109 2 117 4.91e-24 95.1
MsaG007435 MtrunA17_Chr8g0357771 46.535 101 52 1 9 109 2 100 9.08e-24 94.0
MsaG007435 MtrunA17_Chr1g0175611 46.535 101 52 1 9 109 2 100 1.06e-23 93.6
MsaG007435 MtrunA17_Chr1g0180591 48.544 103 51 2 9 109 2 104 1.07e-23 94.0
MsaG007435 MtrunA17_Chr8g0356071 42.982 114 58 2 9 122 2 108 3.00e-23 92.0
MsaG007435 MtrunA17_Chr4g0052061 40.708 113 64 2 9 120 2 112 8.88e-21 85.5
MsaG007435 MtrunA17_Chr4g0049901 33.939 165 86 3 10 153 29 191 2.31e-19 83.6
MsaG007435 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 3.14e-19 83.2
MsaG007435 MtrunA17_Chr3g0097101 42.453 106 51 1 3 108 11 106 5.90e-19 82.8
MsaG007435 MtrunA17_Chr8g0351031 30.303 231 117 6 10 220 3 209 6.14e-19 82.4
MsaG007435 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 1.02e-18 80.5
MsaG007435 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 1.85e-18 80.5
MsaG007435 MtrunA17_Chr5g0412461 29.108 213 127 6 9 201 2 210 2.94e-18 80.5
MsaG007435 MtrunA17_Chr2g0284911 30.270 185 100 4 9 167 17 198 6.16e-18 80.1
MsaG007435 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.05e-17 79.0
MsaG007435 MtrunA17_Chr8g0345001 33.544 158 92 3 8 159 17 167 1.16e-17 78.2
MsaG007435 MtrunA17_Chr8g0351051 51.471 68 33 0 9 76 2 69 1.58e-17 79.0
MsaG007435 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 2.31e-17 77.4
MsaG007435 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 2.48e-17 76.6
MsaG007435 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 2.62e-17 78.2
MsaG007435 MtrunA17_Chr3g0134451 42.308 104 57 3 9 111 2 103 3.42e-17 79.0
MsaG007435 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 8.47e-17 76.6
MsaG007435 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 9.75e-17 76.6
MsaG007435 MtrunA17_Chr5g0412271 48.529 68 35 0 9 76 2 69 1.13e-16 76.3
MsaG007435 MtrunA17_Chr7g0246431 38.182 110 66 1 10 119 3 110 1.16e-16 75.9
MsaG007435 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 1.93e-16 76.3
MsaG007435 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 3.84e-16 75.5
MsaG007435 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 8.76e-16 74.3
MsaG007435 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 9.27e-16 74.3
MsaG007435 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 9.81e-16 73.6
MsaG007435 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 1.07e-15 73.9
MsaG007435 MtrunA17_Chr8g0366231 40.964 83 46 1 9 91 2 81 1.30e-15 73.6
MsaG007435 MtrunA17_Chr3g0093131 34.266 143 77 4 26 159 36 170 1.49e-15 72.4
MsaG007435 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 1.93e-15 69.3
MsaG007435 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 3.02e-15 69.3
MsaG007435 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 3.09e-15 72.4
MsaG007435 MtrunA17_Chr7g0220121 27.477 222 129 6 9 207 2 214 3.64e-15 72.8
MsaG007435 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 4.10e-15 72.0
MsaG007435 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 4.91e-15 68.2
MsaG007435 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 6.56e-15 71.2
MsaG007435 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 1.06e-14 68.2
MsaG007435 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.36e-14 67.4
MsaG007435 MtrunA17_Chr7g0246381 48.485 66 29 1 9 69 2 67 1.37e-14 66.6
MsaG007435 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 1.68e-14 66.2
MsaG007435 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 2.22e-14 70.1
MsaG007435 MtrunA17_Chr3g0122251 41.237 97 54 1 9 105 2 95 2.42e-14 70.1
MsaG007435 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 3.04e-14 68.9
MsaG007435 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 3.85e-14 68.9
MsaG007435 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 4.22e-14 68.2
MsaG007435 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 1.64e-13 67.8
MsaG007435 MtrunA17_Chr4g0060841 29.545 176 102 9 9 172 2 167 4.72e-13 67.8
MsaG007435 MtrunA17_Chr4g0025531 30.097 206 127 5 5 208 5 195 7.91e-13 65.9
MsaG007435 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 1.02e-11 60.5
MsaG007435 MtrunA17_Chr4g0018421 40.000 70 41 1 9 77 2 71 2.23e-11 61.2
MsaG007435 MtrunA17_Chr1g0166611 35.514 107 60 2 20 125 17 115 5.65e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG007435 AT5G60440.1 55.319 188 77 3 5 189 3 186 1.08e-63 201
MsaG007435 AT2G24840.1 50.610 164 70 4 6 163 60 218 1.83e-45 153
MsaG007435 AT1G65360.1 39.556 225 125 6 5 225 3 220 2.94e-42 143
MsaG007435 AT1G01530.1 43.158 190 100 3 4 192 2 184 5.85e-42 143
MsaG007435 AT4G36590.1 46.296 162 81 2 5 160 3 164 1.29e-39 137
MsaG007435 AT2G34440.1 45.299 117 55 2 9 121 2 113 5.30e-27 102
MsaG007435 AT3G66656.1 42.748 131 70 2 9 134 2 132 1.66e-26 101
MsaG007435 AT3G04100.1 33.333 168 96 4 2 159 7 168 2.93e-26 101
MsaG007435 AT1G72350.1 34.211 152 67 3 9 160 43 161 2.52e-22 91.7
MsaG007435 AT1G28460.1 29.586 169 115 2 5 169 4 172 2.92e-20 85.1
MsaG007435 AT4G22950.2 50.000 76 38 0 10 85 3 78 1.95e-19 82.8
MsaG007435 AT4G09960.2 46.512 86 45 1 9 93 2 87 2.54e-19 83.6
MsaG007435 AT4G09960.1 46.512 86 45 1 9 93 2 87 3.17e-19 83.6
MsaG007435 AT4G09960.6 46.512 86 45 1 9 93 3 88 3.19e-19 83.6
MsaG007435 AT1G29962.1 29.651 172 114 4 5 169 4 175 3.67e-19 82.4
MsaG007435 AT4G09960.5 46.512 86 45 1 9 93 12 97 4.60e-19 83.2
MsaG007435 AT4G22950.3 40.909 110 62 1 10 119 3 109 4.80e-19 82.8
MsaG007435 AT4G22950.1 40.909 110 62 1 10 119 3 109 4.80e-19 82.8
MsaG007435 AT2G45660.2 33.929 168 83 6 10 162 3 157 6.62e-19 80.9
MsaG007435 AT4G09960.3 46.512 86 45 1 9 93 28 113 6.71e-19 83.2
MsaG007435 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.02e-18 82.8
MsaG007435 AT4G09960.4 46.512 86 45 1 9 93 97 182 1.91e-18 83.2
MsaG007435 AT2G45660.1 52.941 68 32 0 10 77 3 70 2.35e-18 80.9
MsaG007435 AT2G22540.3 39.130 138 64 5 9 132 2 133 4.58e-18 80.5
MsaG007435 AT2G22540.1 39.130 138 64 5 9 132 2 133 4.58e-18 80.5
MsaG007435 AT4G18960.1 42.308 104 49 2 5 108 15 107 7.46e-18 80.5
MsaG007435 AT5G51870.2 53.731 67 31 0 10 76 3 69 3.08e-17 77.0
MsaG007435 AT2G42830.1 47.368 76 40 0 1 76 9 84 3.36e-17 78.6
MsaG007435 AT3G57230.2 47.059 68 36 0 9 76 2 69 3.43e-17 76.3
MsaG007435 AT2G42830.2 47.368 76 40 0 1 76 9 84 3.54e-17 78.6
MsaG007435 AT3G61120.1 51.471 68 33 0 9 76 2 69 3.92e-17 78.2
MsaG007435 AT5G51870.1 53.731 67 31 0 10 76 3 69 4.31e-17 77.4
MsaG007435 AT3G58780.1 50.704 71 35 0 6 76 14 84 4.43e-17 78.2
MsaG007435 AT4G24540.1 51.471 68 33 0 9 76 2 69 4.48e-17 77.4
MsaG007435 AT3G58780.5 50.704 71 35 0 6 76 20 90 4.55e-17 78.2
MsaG007435 AT5G51870.5 50.000 72 36 0 5 76 21 92 6.29e-17 76.6
MsaG007435 AT5G51870.4 53.731 67 31 0 10 76 3 69 7.50e-17 77.0
MsaG007435 AT3G58780.4 50.704 71 35 0 6 76 14 84 8.33e-17 77.8
MsaG007435 AT5G51870.3 53.731 67 31 0 10 76 13 79 8.98e-17 77.0
MsaG007435 AT4G37940.4 48.529 68 35 0 9 76 2 69 9.64e-17 76.6
MsaG007435 AT5G62165.14 49.254 67 34 0 10 76 3 69 9.92e-17 73.9
MsaG007435 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.03e-16 75.5
MsaG007435 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.04e-16 76.6
MsaG007435 AT1G22130.1 37.143 105 65 1 9 112 2 106 1.08e-16 78.2
MsaG007435 AT5G10140.2 50.725 69 33 1 9 76 2 70 1.09e-16 75.5
MsaG007435 AT3G57390.3 50.000 68 34 0 9 76 2 69 1.17e-16 76.6
MsaG007435 AT1G77980.1 38.095 105 64 1 9 112 2 106 1.42e-16 77.8
MsaG007435 AT5G62165.17 49.254 67 34 0 10 76 3 69 1.44e-16 74.7
MsaG007435 AT5G62165.12 49.254 67 34 0 10 76 3 69 1.44e-16 74.7
MsaG007435 AT5G62165.11 49.254 67 34 0 10 76 3 69 1.44e-16 74.7
MsaG007435 AT5G62165.6 49.254 67 34 0 10 76 3 69 1.56e-16 74.7
MsaG007435 AT5G62165.9 49.254 67 34 0 10 76 3 69 1.56e-16 74.7
MsaG007435 AT5G62165.7 49.254 67 34 0 10 76 3 69 1.56e-16 74.7
MsaG007435 AT5G62165.8 49.254 67 34 0 10 76 3 69 1.56e-16 74.7
MsaG007435 AT5G62165.13 49.254 67 34 0 10 76 3 69 1.56e-16 74.7
MsaG007435 AT5G13790.2 43.011 93 44 1 9 101 2 85 1.64e-16 77.0
MsaG007435 AT5G10140.4 50.725 69 33 1 9 76 2 70 1.76e-16 75.1
MsaG007435 AT1G28450.1 27.586 174 116 4 5 168 4 177 1.89e-16 75.1
MsaG007435 AT3G57230.1 47.059 68 36 0 9 76 2 69 1.93e-16 76.3
MsaG007435 AT3G57230.4 47.059 68 36 0 9 76 2 69 1.93e-16 76.3
MsaG007435 AT5G10140.3 50.725 69 33 1 9 76 2 70 2.01e-16 75.1
MsaG007435 AT5G10140.1 50.725 69 33 1 9 76 2 70 2.05e-16 75.1
MsaG007435 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.09e-16 76.6
MsaG007435 AT3G57390.1 50.000 68 34 0 9 76 2 69 2.41e-16 76.3
MsaG007435 AT4G11880.2 48.611 72 36 1 10 80 3 74 3.34e-16 74.3
MsaG007435 AT4G11880.3 48.611 72 36 1 10 80 3 74 3.34e-16 74.3
MsaG007435 AT1G17310.1 53.165 79 35 1 8 86 47 123 3.54e-16 75.1
MsaG007435 AT3G30260.1 29.697 165 98 4 9 172 2 149 3.74e-16 75.5
MsaG007435 AT5G51860.2 52.239 67 32 0 10 76 3 69 4.25e-16 74.7
MsaG007435 AT1G17310.2 53.165 79 35 1 8 86 58 134 4.42e-16 75.1
MsaG007435 AT2G22630.1 47.059 68 36 0 9 76 2 69 4.72e-16 75.1
MsaG007435 AT2G22630.2 47.059 68 36 0 9 76 2 69 4.72e-16 75.1
MsaG007435 AT1G69120.2 40.659 91 51 1 9 99 2 89 4.96e-16 75.1
MsaG007435 AT5G62165.10 49.254 67 34 0 10 76 3 69 5.56e-16 73.9
MsaG007435 AT5G62165.4 49.254 67 34 0 10 76 3 69 5.56e-16 73.9
MsaG007435 AT1G77950.3 46.053 76 39 2 9 83 2 76 5.66e-16 75.1
MsaG007435 AT1G77950.2 46.053 76 39 2 9 83 2 76 5.66e-16 75.1
MsaG007435 AT1G77950.1 46.053 76 39 2 9 83 2 76 5.66e-16 75.1
MsaG007435 AT1G77950.4 46.053 76 39 2 9 83 2 76 5.66e-16 75.1
MsaG007435 AT5G51860.1 52.239 67 32 0 10 76 3 69 5.88e-16 74.3
MsaG007435 AT5G62165.3 49.254 67 34 0 10 76 3 69 6.34e-16 74.3
MsaG007435 AT5G62165.1 49.254 67 34 0 10 76 3 69 6.34e-16 74.3
MsaG007435 AT5G62165.2 49.254 67 34 0 10 76 3 69 6.34e-16 74.3
MsaG007435 AT4G11880.4 48.611 72 36 1 10 80 3 74 7.41e-16 74.3
MsaG007435 AT4G11880.1 48.611 72 36 1 10 80 3 74 7.41e-16 74.3
MsaG007435 AT5G60910.1 49.296 71 33 1 9 79 2 69 7.51e-16 74.7
MsaG007435 AT1G69120.1 40.659 91 51 1 9 99 2 89 9.60e-16 74.7
MsaG007435 AT1G26310.1 47.826 69 35 1 9 76 2 70 1.14e-15 74.3
MsaG007435 AT2G22540.2 38.406 138 60 6 9 132 2 128 1.22e-15 73.9
MsaG007435 AT3G54340.1 37.600 125 67 4 9 122 2 126 1.59e-15 73.6
MsaG007435 AT5G15800.1 49.275 69 34 1 9 76 2 70 2.53e-15 73.2
MsaG007435 AT5G15800.2 49.275 69 34 1 9 76 2 70 3.94e-15 73.2
MsaG007435 AT5G20240.2 47.143 70 35 1 9 76 2 71 4.38e-15 70.5
MsaG007435 AT2G14210.1 46.377 69 36 1 9 76 2 70 4.55e-15 72.4
MsaG007435 AT2G14210.2 46.377 69 36 1 9 76 2 70 5.43e-15 72.0
MsaG007435 AT5G20240.1 47.143 70 35 1 9 76 2 71 6.79e-15 71.2
MsaG007435 AT5G23260.1 44.681 94 44 3 5 90 12 105 1.29e-14 71.6
MsaG007435 AT5G23260.4 44.681 94 44 3 5 90 12 105 1.32e-14 71.6
MsaG007435 AT5G65050.2 46.377 69 36 1 9 76 2 70 1.43e-14 69.7
MsaG007435 AT3G02310.2 47.826 69 35 1 9 76 2 70 1.67e-14 70.1
MsaG007435 AT3G58780.2 52.459 61 29 0 6 66 14 74 1.95e-14 70.9
MsaG007435 AT5G23260.3 44.318 88 43 2 9 90 2 89 2.16e-14 70.5
MsaG007435 AT5G23260.2 44.318 88 43 2 9 90 2 89 2.23e-14 70.9
MsaG007435 AT5G65050.5 46.377 69 36 1 9 76 2 70 2.43e-14 69.3
MsaG007435 AT3G58780.3 52.459 61 29 0 6 66 14 74 2.63e-14 70.9
MsaG007435 AT1G47760.1 34.483 116 61 3 9 123 2 103 2.69e-14 69.3
MsaG007435 AT5G65050.3 46.377 69 36 1 9 76 2 70 2.96e-14 69.3
MsaG007435 AT5G65050.1 46.377 69 36 1 9 76 2 70 2.96e-14 68.9
MsaG007435 AT2G03710.3 53.571 56 26 0 9 64 2 57 4.02e-14 68.9
MsaG007435 AT1G24260.3 28.992 238 139 10 9 234 2 221 4.56e-14 69.7
MsaG007435 AT5G65060.3 46.377 69 36 1 9 76 2 70 4.89e-14 68.6
MsaG007435 AT3G02310.1 47.826 69 35 1 9 76 2 70 5.03e-14 69.7
MsaG007435 AT5G65060.2 46.377 69 36 1 9 76 2 70 5.49e-14 68.6
MsaG007435 AT5G65060.1 46.377 69 36 1 9 76 2 70 6.34e-14 68.6
MsaG007435 AT1G24260.2 28.514 249 140 10 9 234 2 235 6.94e-14 69.3
MsaG007435 AT1G24260.1 46.377 69 36 1 9 76 2 70 8.04e-14 69.3
MsaG007435 AT2G03710.1 47.143 70 35 2 9 76 2 71 9.20e-14 69.3
MsaG007435 AT2G03710.2 47.143 70 35 2 9 76 2 71 9.55e-14 68.9
MsaG007435 AT1G71692.1 44.286 70 38 1 9 77 2 71 1.69e-13 67.8
MsaG007435 AT5G65070.4 42.029 69 39 1 9 76 2 70 2.57e-13 65.9
MsaG007435 AT5G65070.1 42.029 69 39 1 9 76 2 70 5.18e-13 66.2
MsaG007435 AT5G65070.5 42.029 69 39 1 9 76 2 70 1.02e-12 65.5
MsaG007435 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.13e-12 65.9
MsaG007435 AT1G18750.4 27.723 202 122 9 9 188 2 201 3.93e-12 65.5
MsaG007435 AT1G18750.1 38.667 75 44 1 9 81 2 76 4.76e-12 65.1
MsaG007435 AT1G18750.3 38.667 75 44 1 9 81 2 76 4.82e-12 65.1
MsaG007435 AT5G65070.3 47.368 57 30 0 9 65 2 58 5.36e-12 63.9
MsaG007435 AT1G69540.1 33.636 110 65 3 9 117 2 104 1.31e-11 63.9
MsaG007435 AT1G46408.1 36.134 119 67 4 10 119 5 123 1.40e-11 63.2
MsaG007435 AT1G69540.2 33.636 110 65 3 9 117 2 104 1.45e-11 63.5
MsaG007435 AT4G37435.1 40.278 72 42 1 9 79 2 73 2.73e-11 61.2
MsaG007435 AT5G65080.3 42.667 75 40 2 5 76 3 77 2.92e-11 61.2
MsaG007435 AT2G26320.1 40.000 70 40 1 9 76 18 87 3.34e-11 58.9
MsaG007435 AT2G03060.3 28.070 171 106 7 9 164 2 170 3.75e-11 62.4
MsaG007435 AT2G03060.7 28.070 171 106 7 9 164 2 170 3.75e-11 62.4
MsaG007435 AT2G03060.1 28.070 171 106 7 9 164 2 170 3.75e-11 62.4
MsaG007435 AT2G03060.2 28.070 171 106 7 9 164 2 170 4.20e-11 62.4
MsaG007435 AT5G65080.2 48.148 54 28 0 9 62 9 62 7.44e-11 60.1
MsaG007435 AT5G27130.1 40.000 85 47 2 2 82 6 90 7.64e-11 61.2

Find 66 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGCTTCAACAATA+TGG 0.267060 2:+18013372 MsaT007435.1:CDS
ATGGGCGGAGGAGGTGGATA+TGG 0.308161 2:+18013391 MsaT007435.1:CDS
ATCTGAGCTTGTGGAGGATT+TGG 0.314155 2:-18013307 None:intergenic
TTGTTGCTCATCATGCTAAT+AGG 0.316248 2:+18013200 MsaT007435.1:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 2:-18012964 None:intergenic
AGGCGACTGAGACTCAATTT+TGG 0.339905 2:+18013101 MsaT007435.1:CDS
TGGTGGGCTTGTCCCGTTGA+TGG 0.374570 2:+18013121 MsaT007435.1:CDS
ATGTTGCAACCTCATTTGTT+TGG 0.374612 2:+18013358 MsaT007435.1:CDS
TGCTAATAGGCTTGTAATCC+AGG 0.391884 2:+18013213 MsaT007435.1:CDS
AACAATATGGGCGGAGGAGG+TGG 0.400658 2:+18013385 MsaT007435.1:CDS
TTGTTTGGCTTCAACAATAT+GGG 0.407022 2:+18013373 MsaT007435.1:CDS
TCTTCTCGATGTCCAGTAGT+TGG 0.408924 2:-18013048 None:intergenic
ACAAATGAGGTTGCAACATT+GGG 0.423647 2:-18013354 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.432754 2:+18013131 MsaT007435.1:CDS
TCCCGTTGATGGGATGAATA+GGG 0.437027 2:+18013132 MsaT007435.1:CDS
TCTATGACCGTATCAACATT+GGG 0.442152 2:-18012917 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 2:-18013155 None:intergenic
AACAAATGAGGTTGCAACAT+TGG 0.442443 2:-18013355 None:intergenic
TGAATTATTCAAGAAGGCTC+TGG 0.442548 2:+18013162 MsaT007435.1:CDS
GTGGAGGATTTGGTTGATGA+TGG 0.460225 2:-18013297 None:intergenic
TCTCAGTCGCCTTGCGCAAG+TGG 0.462833 2:-18013090 None:intergenic
TCATAGATCGTTATCTCTCT+CGG 0.471861 2:+18012933 MsaT007435.1:CDS
GCCCTATTCATCCCATCAAC+GGG 0.481029 2:-18013133 None:intergenic
GGTGGGCTTGTCCCGTTGAT+GGG 0.493797 2:+18013122 MsaT007435.1:CDS
TTCAACAATATGGGCGGAGG+AGG 0.500330 2:+18013382 MsaT007435.1:CDS
ATGATGGAGAGGCATGTTAG+AGG 0.501643 2:-18013281 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 2:-18012918 None:intergenic
CCTTCTTGAATAATTCAAGT+TGG 0.516494 2:-18013156 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 2:-18012834 None:intergenic
AGTATTGAGCTCGCGCACGT+TGG 0.531885 2:-18013008 None:intergenic
GGCTTCAACAATATGGGCGG+AGG 0.534065 2:+18013379 MsaT007435.1:CDS
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 2:-18013000 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.535705 2:+18013156 MsaT007435.1:CDS
GGCCCTATTCATCCCATCAA+CGG 0.536262 2:-18013134 None:intergenic
GACTCAGATCAACCAACTAC+TGG 0.537057 2:+18013036 MsaT007435.1:CDS
GGAGGTGGATATGGACCCTC+CGG 0.542914 2:+18013400 MsaT007435.1:CDS
AGGCTCGGATCAAAAGAATC+CGG 0.544225 2:-18013419 None:intergenic
TGGCCACCCCAATGTTGATA+CGG 0.545005 2:+18012910 MsaT007435.1:CDS
CATAGATCGTTATCTCTCTC+GGG 0.546382 2:+18012934 MsaT007435.1:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 2:+18012798 MsaT007435.1:CDS
TTGTTGAAGCCAAACAAATG+AGG 0.561085 2:-18013367 None:intergenic
AATGAAAATACCTTCTCTCC+AGG 0.563686 2:-18012887 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 2:+18012797 MsaT007435.1:CDS
GATGGAAACATCTGAGCTTG+TGG 0.573604 2:-18013316 None:intergenic
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 2:+18012836 MsaT007435.1:CDS
AGCAACATCTGCACCACAGA+GGG 0.595144 2:-18012849 None:intergenic
CTTCAACCATGTCAAGTGGA+AGG 0.599332 2:+18012711 None:intergenic
AGATCTGAGCCACTTGCGCA+AGG 0.599881 2:+18013081 MsaT007435.1:CDS
TGTGCTTCAACCATGTCAAG+TGG 0.603608 2:+18012707 None:intergenic
GGGTTTGAGTAGGAGCACCC+TGG 0.605264 2:-18013231 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 2:-18012811 None:intergenic
ATTATTCAAGAAGGCTCTGG+AGG 0.616746 2:+18013165 MsaT007435.1:CDS
GGGTTATGATAAAACTGTGA+TGG 0.616862 2:-18013334 None:intergenic
CGGGTCCCACCCCAAAACAA+TGG 0.635478 2:+18012953 MsaT007435.1:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 2:+18012973 MsaT007435.1:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 2:-18012978 None:intergenic
GCTAATAGGCTTGTAATCCA+GGG 0.641442 2:+18013214 MsaT007435.1:CDS
GGATTTGGTTGATGATGGAG+AGG 0.642684 2:-18013292 None:intergenic
CTCGGATCAAAAGAATCCGG+AGG 0.648853 2:-18013416 None:intergenic
TTTGGCTTCAACAATATGGG+CGG 0.655383 2:+18013376 MsaT007435.1:CDS
TGACCGTATCAACATTGGGG+TGG 0.665619 2:-18012913 None:intergenic
TCGGATCAAAAGAATCCGGA+GGG 0.668804 2:-18013415 None:intergenic
GGAAACATCTGAGCTTGTGG+AGG 0.688544 2:-18013313 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 2:+18012722 MsaT007435.1:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 2:-18012916 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 2:-18012850 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 18012719 18013432 18012719 ID=MsaG007435
Chr2 mRNA 18012719 18013432 18012719 ID=MsaT007435.1;Parent=MsaG007435
Chr2 exon 18012719 18013432 18012719 ID=MsaT007435.1.exon1;Parent=MsaT007435.1
Chr2 CDS 18012719 18013432 18012719 ID=cds.MsaT007435.1;Parent=MsaT007435.1
Gene Sequence

>MsaT007435.1

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAAATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCATTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGGGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAACTACTGGACATCGAGAAGAAACGTGCTGAAGATCTGAGCCACTTGCGCAAGGCGACTGAGACTCAATTTTGGTGGGCTTGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTATTCAAGAAGGCTCTGGAGGAGCTTAAGAAACTTGTTGCTCATCATGCTAATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCCTTCCGTTTTTTGTTGGAAACGGTTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCACAAGCTCAGATGTTTCCATCACAGTTTTATCATAACCCAATGTTGCAACCTCATTTGTTTGGCTTCAACAATATGGGCGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MsaT007435.1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEDLSHLRKATETQFWWACPVDGMNRAQLELFKKALEELKKLVAHHANRLVIQGAPTQTLPFFVGNGSSSNMPLHHQPNPPQAQMFPSQFYHNPMLQPHLFGFNNMGGGGGYGPSGFF*