AlfalfaGEDB | MsaG007465

M. sativa ssp. caerulea / MsaG007465

KEGG: K04733
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009975 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0034641 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044464 GO:0046068 GO:0046390 GO:0046483 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0052652 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007465	XP_003594614.1	88.567	726	74	3	1	717	1	726	0.0	1263

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007465	sp\|Q9SA25\|WAKLG_ARATH	42.657	715	347	16	32	711	28	714	0.0	540

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007465	tr\|G7IMM9\|G7IMM9_MEDTR	88.567	726	74	3	1	717	1	726	0.0	1263

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007465	MtrunA17_Chr2g0293081	88.567	726	74	3	1	717	1	726	0.0	1263
MsaG007465	MtrunA17_Chr2g0293071	95.373	389	18	0	329	717	1	389	0.0	716
MsaG007465	MtrunA17_Chr2g0293061	82.623	305	36	5	1	299	1	294	5.50e-173	497
MsaG007465	MtrunA17_Chr3g0125431	40.320	687	329	20	37	660	30	698	2.78e-152	461
MsaG007465	MtrunA17_Chr2g0279661	38.719	718	351	20	9	660	9	703	3.06e-152	460
MsaG007465	MtrunA17_Chr3g0125461	39.592	687	329	17	37	660	53	716	1.02e-151	458
MsaG007465	MtrunA17_Chr1g0158251	38.030	731	360	18	2	675	13	707	5.35e-151	457
MsaG007465	MtrunA17_Chr3g0125471	40.763	655	304	19	37	660	32	633	4.20e-150	452
MsaG007465	MtrunA17_Chr3g0125441	39.266	708	323	22	37	660	44	728	6.00e-150	455
MsaG007465	MtrunA17_Chr1g0148461	37.802	746	365	22	1	678	16	730	3.25e-146	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007465	AT1G16260.3	43.201	706	347	16	32	711	28	705	0.0	543
MsaG007465	AT1G16260.1	42.657	715	347	16	32	711	28	714	0.0	540
MsaG007465	AT1G16260.2	42.657	715	347	16	32	711	28	714	0.0	540
MsaG007465	AT1G16130.1	44.874	673	306	15	37	661	35	690	1.40e-180	533
MsaG007465	AT1G16120.1	42.303	747	346	17	1	686	1	723	1.94e-175	520
MsaG007465	AT1G69730.1	43.239	710	300	17	37	661	31	722	3.94e-175	521
MsaG007465	AT1G79670.1	43.224	701	341	17	7	661	6	695	5.72e-175	519
MsaG007465	AT1G79680.1	42.996	721	320	16	31	675	21	726	7.20e-174	517
MsaG007465	AT1G16150.1	43.275	684	321	17	37	666	33	703	9.73e-173	514
MsaG007465	AT1G17910.1	41.111	720	323	17	31	660	20	728	1.08e-170	508

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Find 125 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTACCTTGAACTACTG+TGG	0.637355	2:-18300094	None:intergenic
AAAAGTGACGTGTACAGCTT+TGG	0.436864	2:+18300162	MsaT007465.1:CDS
AAACGCATGTCCCATGTCAT+TGG	0.474979	2:-18299898	None:intergenic
AAAGTTTAAGGTTGAAGGAA+AGG	0.506301	2:+18299711	MsaT007465.1:CDS
AAATTCTTCAAAAGAAATGG+TGG	0.592839	2:+18299508	MsaT007465.1:CDS
AAATTGAAGAGCACCAACCT+TGG	0.536315	2:+18300499	MsaT007465.1:CDS
AACATACTCCACAGACTCGG+AGG	0.680533	2:+18300566	MsaT007465.1:CDS
AACTACTATGTTCACCTTAA+AGG	0.200540	2:+18299579	MsaT007465.1:CDS
AACTTCAATTTGGGTAGCGA+TGG	0.538052	2:+18298106	MsaT007465.1:CDS
AAGAAGCCAGTATCCTCTAT+AGG	0.443523	2:+18300213	MsaT007465.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	18297617	18300614	18297617	ID=MsaG007465
Chr2	mRNA	18297617	18300614	18297617	ID=MsaT007465.1;Parent=MsaG007465
Chr2	exon	18297617	18298514	18297617	ID=MsaT007465.1.exon1;Parent=MsaT007465.1
Chr2	CDS	18297617	18298514	18297617	ID=cds.MsaT007465.1;Parent=MsaT007465.1
Chr2	exon	18298983	18299036	18298983	ID=MsaT007465.1.exon2;Parent=MsaT007465.1
Chr2	CDS	18298983	18299036	18298983	ID=cds.MsaT007465.1;Parent=MsaT007465.1
Chr2	exon	18299413	18300614	18299413	ID=MsaT007465.1.exon3;Parent=MsaT007465.1
Chr2	CDS	18299413	18300614	18299413	ID=cds.MsaT007465.1;Parent=MsaT007465.1

Gene Sequence

>MsaT007465.1

ATGATTCTGCAATTTACAATATTTCATATCATCTTAGCTCTAATATTCCCCATATTTCCTCCATTGACATCAGCACAGCAAGAAGATGGAATCATAGCACAACAAGGTTGTAATTCAACATGTGGAACAATATCAATCCCTTTCCCATTTGGAATGAAAGAACCTCGTTGTTATGCAGACAAATGGTTCGAAATAGAGTGCAAATTAGACAACAATTCTCAAAATCTAAAACCATATTTGAAGTCTTTAAATCTTGAGGTAAATTATTTTGACGAGTACTCAGGCATGGTTGAGATTATGAATCCAATTTATCATTCAAACTGTCGAAAGTATAATAACAATAAAATTGTTACTATAAACCTTAGAGAGAGTCCTTTCATATATTCCCAGAATGAAAACAAATTTCTAGCCGTTGGATGTAACAATCTTGCTTTTCTACAATCAAATGGAACAACCGTTGGTGGTTGTGTATCAATTTGCGATGACAGCAACTTCAATTTGGGTAGCGATGGTTGTAATGGAAGATCGTGTTGTGAAACTTCATTGCCTATGCATCTTTCAGAATATAATGCGACGTTACAAGGTTTAAGGGAAGAGAATATTAGTGAGTGTAGCTATGCTTTGATTTTAAGTGATCGTTGGGTATCTTTTGATGGGTCATATTTGAGTTCTTATCAAGTTGAGAAATTTAATGAGTTAGAGAATATGGAGTATGCACCAGCAATGCTTGAGTGGGAAATTTTGGATGATATGTTGGTTAATTCGACGTTTCAACTTCCTTCAGATTCAAATTGTTATGATTCCAAACTTACATCCTTAAATAACAGAACAACTGGTCGGAAATGTCATTGCTCCTCGGGTTACACCGGCAATCCCTACATTTTTGGAGGCTGTACAGAAATTCCAGGATTCTTTGATAAGAACAACCAGTCGAAGAAGTCGGCTATTGTAGGAGTTTCATCAAGTCTCGGATCCATAGGTGTCCTCATTGGTCTATGGTTATTGCACAAAGATATGAAGAAAAAAATGATAAAGAACCGAAAAGAAAAATTCTTCAAAAGAAATGGTGGTTTGTTGTTAAAACAAAGAATGTCTTCGGGAGAAGTAAATGTTGACAGAACTACTATGTTCACCTTAAAGGATCTAAAGAAAGCCACTGATAACTTCAATAAGAATAGAGTTCTTGGAAAAGGAGGTCAAGGTACAGTTTACAAAGGCATGCTAGTAGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTTGAAGGAAAGGTCGAAGAGTTTATTAACGAGTTTGTTATTCTTTCACAAATCAACAACAGAAATGTGGTCAAGATATTAGGATGTTGTTTAGAGACAGAAATTCCATTGCTTGTTTATGAATTCATTCCTAACGGCAACCTTTTTCAGTATTTGCATGACCAAAACGTGGACATACCAATGACATGGGACATGCGTTTAAGAATTGCTACTGAAATCGCTGGAGCATTATTTTACTTACACTCAATTGCATCTCAACCTATTTATCATAGAGATATCAAGTCTACAAATATACTACTTGATGAAAAGTATAGGGCAAAATTAGCAGATTTTGGAACATCAAGAATAATTTCAATTGAAGCTACTCACCTTACCACAGTAGTTCAAGGTACTTTTGGTTACTTAGACCCTGAGTACTTTCATACTAGTCAATTTACCGAGAAAAGTGACGTGTACAGCTTTGGAGTAGTTCTTGCTGAACTTTTAACTGGTAAGAAGCCAGTATCCTCTATAGGATCTGGGGAATACCAAAGTTTAGCTTCCTATTTTATTGAGTGTATAGAGGAGAATATGTTGTTTGACATTATTGACAAAAGGGTCACAAAAGAAGGGGAGAAAGAACATATCATTGCAGTTGCAAATCTTGCGTATAGATGCTTAGAGTTGAACGGAAGAAAACGACCAACTATGAAAGAAGTTACATTAGAATTGGAAGGGATCAGGGGATTGAACAGGAAACTTGGTGCACAACAAAACCATGAGGAAATTGAGCTTCCTGAAATTGAAGAGCACCAACCTTGGGATGAGTTTTCTACGTCAAATTCATTGCAAATCGTTGACAGTCAAACATACTCCACAGACTCGGAGGTTATGCATATTATTGAATTAAAATAG

Protein sequence

>MsaT007465.1

MILQFTIFHIILALIFPIFPPLTSAQQEDGIIAQQGCNSTCGTISIPFPFGMKEPRCYADKWFEIECKLDNNSQNLKPYLKSLNLEVNYFDEYSGMVEIMNPIYHSNCRKYNNNKIVTINLRESPFIYSQNENKFLAVGCNNLAFLQSNGTTVGGCVSICDDSNFNLGSDGCNGRSCCETSLPMHLSEYNATLQGLREENISECSYALILSDRWVSFDGSYLSSYQVEKFNELENMEYAPAMLEWEILDDMLVNSTFQLPSDSNCYDSKLTSLNNRTTGRKCHCSSGYTGNPYIFGGCTEIPGFFDKNNQSKKSAIVGVSSSLGSIGVLIGLWLLHKDMKKKMIKNRKEKFFKRNGGLLLKQRMSSGEVNVDRTTMFTLKDLKKATDNFNKNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKVEEFINEFVILSQINNRNVVKILGCCLETEIPLLVYEFIPNGNLFQYLHDQNVDIPMTWDMRLRIATEIAGALFYLHSIASQPIYHRDIKSTNILLDEKYRAKLADFGTSRIISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGKKPVSSIGSGEYQSLASYFIECIEENMLFDIIDKRVTKEGEKEHIIAVANLAYRCLELNGRKRPTMKEVTLELEGIRGLNRKLGAQQNHEEIELPEIEEHQPWDEFSTSNSLQIVDSQTYSTDSEVMHIIELK*