AlfalfaGEDB | MsaG007500

M. sativa ssp. caerulea / MsaG007500

KEGG: K02206
GO: GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007500	XP_013463082.1	100.000	294	0	0	1	294	1	294	0.0	610

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007500	sp\|P24923\|CDC21_MEDSA	99.310	290	2	0	5	294	2	291	0.0	595

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007500	tr\|A0A072V5L7\|A0A072V5L7_MEDTR	100.000	294	0	0	1	294	1	294	0.0	610

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000029	MsaG007500	0.816431	9.632087e-52	1.930812e-49
MsaG000047	MsaG007500	0.834878	4.231697e-56	1.412312e-53
MsaG000062	MsaG007500	0.842266	5.340853e-58	2.239852e-55
MsaG000070	MsaG007500	0.806215	1.553196e-49	2.422763e-47
MsaG000083	MsaG007500	0.818663	3.041702e-52	6.458701e-50
MsaG000113	MsaG007500	0.832655	1.511943e-55	4.724733e-53
MsaG000151	MsaG007500	0.885250	2.060768e-71	4.778937e-68
MsaG000153	MsaG007500	0.837374	9.900461e-57	3.562028e-54
MsaG000163	MsaG007500	0.803032	7.115466e-49	1.030675e-46
MsaG000188	MsaG007500	0.823162	2.836615e-53	6.787501e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007500	MtrunA17_Chr2g0293491	100.000	294	0	0	1	294	1	294	0.0	610
MsaG007500	MtrunA17_Chr4g0051261	92.177	294	23	0	1	294	1	294	0.0	572
MsaG007500	MtrunA17_Chr4g0002001	55.195	308	118	5	1	290	1	306	7.31e-119	343
MsaG007500	MtrunA17_Chr1g0187371	52.525	297	132	4	2	290	16	311	8.52e-116	336
MsaG007500	MtrunA17_Chr8g0358921	46.441	295	153	2	1	290	44	338	1.71e-91	275
MsaG007500	MtrunA17_Chr3g0093571	47.020	302	140	5	4	287	25	324	1.43e-85	265
MsaG007500	MtrunA17_Chr6g0483151	47.552	286	147	3	2	287	12	294	1.76e-85	262
MsaG007500	MtrunA17_Chr8g0377071	47.697	304	139	6	1	290	382	679	2.36e-85	270
MsaG007500	MtrunA17_Chr4g0057791	43.046	302	156	5	1	289	215	513	6.23e-84	261
MsaG007500	MtrunA17_Chr3g0093391	46.026	302	143	5	4	287	23	322	8.88e-84	261

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007500	AT3G48750.1	83.673	294	48	0	1	294	1	294	0.0	520
MsaG007500	AT2G38620.2	55.519	308	117	6	1	290	1	306	7.68e-119	343
MsaG007500	AT1G20930.1	55.034	298	125	4	1	290	13	309	1.62e-118	343
MsaG007500	AT3G54180.1	53.595	306	124	5	1	290	1	304	1.45e-115	335
MsaG007500	AT1G76540.1	52.349	298	133	5	1	290	11	307	2.94e-114	332
MsaG007500	AT2G38620.4	47.931	290	105	4	1	290	1	244	3.33e-96	284
MsaG007500	AT1G66750.1	50.174	287	140	3	1	287	10	293	1.32e-92	278
MsaG007500	AT1G18040.1	48.601	286	144	3	2	287	10	292	1.43e-91	277
MsaG007500	AT2G38620.3	58.403	238	80	5	1	220	1	237	2.15e-91	272
MsaG007500	AT2G38620.1	58.403	238	80	5	1	220	1	237	2.15e-91	272

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Find 68 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATACGGCGTCGTTTACA+AGG	0.470308	2:-18879095	MsaT007500.1:CDS
AAGATTGGTGAAGGAACATA+CGG	0.575038	2:-18879109	MsaT007500.1:CDS
AAGCAGCGAAATCTCACGAA+TGG	0.622360	2:+18878991	None:intergenic
AAGGTGGAGAAGATTGGTGA+AGG	0.638609	2:-18879118	MsaT007500.1:CDS
AATCGGCGACCTCTATTCCC+TGG	0.474228	2:-18875590	MsaT007500.1:CDS
AATTACTGCCAGGAGCGCTG+TGG	0.660367	2:-18873915	MsaT007500.1:CDS
ACTTACCTTAGATGGCCACC+TGG	0.622989	2:+18874946	None:intergenic
AGACATTTACTTACCTTAGA+TGG	0.323829	2:+18874938	None:intergenic
AGACCAGCTGGCTCAAGATT+TGG	0.324310	2:+18874827	None:intergenic
ATCGGCGACCTCTATTCCCT+GGG	0.499404	2:-18875589	MsaT007500.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	18873877	18879243	18873877	ID=MsaG007500
Chr2	mRNA	18873877	18879243	18873877	ID=MsaT007500.1;Parent=MsaG007500
Chr2	exon	18873877	18873966	18873877	ID=MsaT007500.1.exon8;Parent=MsaT007500.1
Chr2	CDS	18873877	18873966	18873877	ID=cds.MsaT007500.1;Parent=MsaT007500.1
Chr2	exon	18874814	18874867	18874814	ID=MsaT007500.1.exon7;Parent=MsaT007500.1
Chr2	CDS	18874814	18874867	18874814	ID=cds.MsaT007500.1;Parent=MsaT007500.1
Chr2	exon	18874952	18875039	18874952	ID=MsaT007500.1.exon6;Parent=MsaT007500.1
Chr2	CDS	18874952	18875039	18874952	ID=cds.MsaT007500.1;Parent=MsaT007500.1
Chr2	exon	18875554	18875717	18875554	ID=MsaT007500.1.exon5;Parent=MsaT007500.1
Chr2	CDS	18875554	18875717	18875554	ID=cds.MsaT007500.1;Parent=MsaT007500.1
Chr2	exon	18876875	18877048	18876875	ID=MsaT007500.1.exon4;Parent=MsaT007500.1
Chr2	CDS	18876875	18877048	18876875	ID=cds.MsaT007500.1;Parent=MsaT007500.1
Chr2	exon	18877850	18877970	18877850	ID=MsaT007500.1.exon3;Parent=MsaT007500.1
Chr2	CDS	18877850	18877970	18877850	ID=cds.MsaT007500.1;Parent=MsaT007500.1
Chr2	exon	18878962	18879146	18878962	ID=MsaT007500.1.exon2;Parent=MsaT007500.1
Chr2	CDS	18878962	18879146	18878962	ID=cds.MsaT007500.1;Parent=MsaT007500.1
Chr2	exon	18879235	18879243	18879235	ID=MsaT007500.1.exon1;Parent=MsaT007500.1
Chr2	CDS	18879235	18879243	18879235	ID=cds.MsaT007500.1;Parent=MsaT007500.1

Gene Sequence

>MsaT007500.1

ATGGAGCAATACGAAAAGGTGGAGAAGATTGGTGAAGGAACATACGGCGTCGTTTACAAGGCACGTGACCGTGTTACGAATGAAACCATCGCGTTGAAGAAGATTCGACTTGAACAGGAAGATGAAGGTGTTCCTAGCACCGCCATTCGTGAGATTTCGCTGCTTAAAGAAATGCAGCATAGGAACATCGTTAGGTTGCAGGATGTAGTGCACAGTGACAAGCGATTGTATCTGGTTTTTGAGTATCTGGACTTAGATCTGAAGAAGCATATGGATTCATCTCCTGAGTTTATAAAAGATCCGCGACAAGTAAAAATGTTCCTTTATCAAATGCTCTGTGGAATTGCTTACTGTCATTCACACAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATCGCCGTACTAATTCACTTAAGCTTGCCGATTTTGGATTGGCCAGGGCATTTGGTATTCCTGTCAGAACATTTACACATGAGGTAGTTACACTGTGGTACCGAGCTCCGGAAATATTGCTTGGATCTCGTCATTATTCTACCCCAGTTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGCAAATCGGCGACCTCTATTCCCTGGGGATTCCGAGATTGATGAGTTATTTAAAATATTTAGAATCTTGGGTACACCAAATGAAGATACATGGCCAGGAGTAACTTCATTGCCTGATTTTAAATCAACATTTCCCAGGTGGCCATCTAAGGACCTAGCAACCGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTTAATAGCATGCTTTGCTTGGATCCCACCAAAAGAATTACTGCCAGGAGCGCTGTGGAGCATGAATATTTCAAAGACATTAAGTTTGTACCCTAA

Protein sequence

>MsaT007500.1

MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSDKRLYLVFEYLDLDLKKHMDSSPEFIKDPRQVKMFLYQMLCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMANRRPLFPGDSEIDELFKIFRILGTPNEDTWPGVTSLPDFKSTFPRWPSKDLATVVPNLEPAGLDLLNSMLCLDPTKRITARSAVEHEYFKDIKFVP*