AlfalfaGEDB | MsaG007534

M. sativa ssp. caerulea / MsaG007534

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007534	XP_003594670.1	96.024	327	13	0	1	327	1	327	0.0	527

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007534	sp\|Q2QZJ8\|JAMYB_ORYSJ	77.576	165	35	1	23	185	28	192	5.09e-90	273

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007534	tr\|G7IL36\|G7IL36_MEDTR	96.024	327	13	0	1	327	1	327	0.0	527

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TFs/TRs:

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Gene ID	Type	Classification
MsaG007534	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000107	MsaG007534	0.811780	1.012453e-50	1.805902e-48
MsaG000459	MsaG007534	0.817844	4.651867e-52	9.670584e-50
MsaG000905	MsaG007534	0.809054	3.899824e-50	6.509726e-48
MsaG001399	MsaG007534	0.804373	3.759882e-49	5.618020e-47
MsaG001551	MsaG007534	0.841530	8.336873e-58	3.415419e-55
MsaG002043	MsaG007534	0.880249	1.354447e-69	2.472828e-66
MsaG002481	MsaG007534	0.814152	3.076194e-51	5.820941e-49
MsaG002489	MsaG007534	0.849756	5.013477e-60	2.694767e-57
MsaG002603	MsaG007534	0.854437	2.376606e-61	1.504955e-58
MsaG002978	MsaG007534	0.804166	4.150239e-49	6.171607e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007534	MtrunA17_Chr2g0293911	96.024	327	13	0	1	327	1	327	0.0	527
MsaG007534	MtrunA17_Chr4g0068921	85.987	157	22	0	1	157	1	157	2.46e-89	265
MsaG007534	MtrunA17_Chr1g0194301	69.032	155	48	0	11	165	20	174	2.84e-82	250
MsaG007534	MtrunA17_Chr1g0194291	68.047	169	47	2	18	186	15	176	4.87e-81	247
MsaG007534	MtrunA17_Chr1g0209661	43.046	302	162	3	18	319	21	312	1.10e-78	243
MsaG007534	MtrunA17_Chr7g0228231	82.301	113	20	0	18	130	8	120	1.58e-67	210
MsaG007534	MtrunA17_Chr6g0450101	78.947	114	24	0	18	131	8	121	8.17e-66	206
MsaG007534	MtrunA17_Chr1g0168661	70.476	105	31	0	25	129	22	126	9.66e-51	169
MsaG007534	MtrunA17_Chr1g0186061	59.200	125	48	1	5	129	4	125	2.39e-49	165
MsaG007534	MtrunA17_Chr5g0410961	56.693	127	53	1	20	146	8	132	6.12e-46	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007534	AT5G49620.1	54.462	325	82	12	19	324	21	298	8.33e-89	268
MsaG007534	AT1G48000.1	74.675	154	35	1	22	175	30	179	5.92e-85	256
MsaG007534	AT5G49620.2	52.212	339	82	13	19	324	21	312	5.98e-85	259
MsaG007534	AT3G06490.1	50.148	337	111	11	1	316	1	301	7.57e-85	259
MsaG007534	AT2G47190.1	74.648	142	36	0	19	160	15	156	1.20e-78	241
MsaG007534	AT1G68320.1	57.360	197	80	2	23	219	18	210	6.15e-75	232
MsaG007534	AT1G25340.1	63.576	151	55	0	25	175	19	169	8.49e-70	219
MsaG007534	AT3G27810.1	80.000	110	22	0	21	130	17	126	2.74e-65	206
MsaG007534	AT1G25340.2	60.927	151	54	1	25	175	19	164	2.36e-64	205
MsaG007534	AT1G25340.3	60.927	151	54	1	25	175	19	164	5.96e-64	205

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Find 86 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCACAATACTTACC+GGG	0.631573	2:+19639166	MsaT007534.1:CDS
AAACACTCCTTGGATTCAAG+GGG	0.650871	2:+19639759	MsaT007534.1:CDS
AACACTCTTGCTCGTTCAGC+TGG	0.485635	2:+19638137	MsaT007534.1:CDS
AAGATGCCATGCGCTACCTT+TGG	0.397038	2:+19639281	MsaT007534.1:CDS
ACAACGAGATCAAGAATTAT+TGG	0.314777	2:+19639197	MsaT007534.1:CDS
ACCAACAAGCTCAGCAATTT+GGG	0.318446	2:+19639671	MsaT007534.1:CDS
ACCCAAATTGCTGAGCTTGT+TGG	0.406996	2:-19639672	None:intergenic
ACTAATAATGGTTCACCAAG+TGG	0.601663	2:+19639367	MsaT007534.1:CDS
ACTCCAGAGAATAGTAGCAA+TGG	0.604297	2:+19639526	MsaT007534.1:CDS
ACTTGGTGAACCATTATTAG+TGG	0.482800	2:-19639365	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	19637990	19639846	19637990	ID=MsaG007534
Chr2	mRNA	19637990	19639846	19637990	ID=MsaT007534.1;Parent=MsaG007534
Chr2	exon	19637990	19638158	19637990	ID=MsaT007534.1.exon1;Parent=MsaT007534.1
Chr2	CDS	19637990	19638158	19637990	ID=cds.MsaT007534.1;Parent=MsaT007534.1
Chr2	exon	19638755	19638884	19638755	ID=MsaT007534.1.exon2;Parent=MsaT007534.1
Chr2	CDS	19638755	19638884	19638755	ID=cds.MsaT007534.1;Parent=MsaT007534.1
Chr2	exon	19639159	19639846	19639159	ID=MsaT007534.1.exon3;Parent=MsaT007534.1
Chr2	CDS	19639159	19639846	19639159	ID=cds.MsaT007534.1;Parent=MsaT007534.1

Gene Sequence

>MsaT007534.1

ATGGAAGTGGAAGGAAGTGTAATAAGCAACTCGAACATCACCATGCTCCAAAGTGATGATGAGTTGGATCTTCGAAGAGGACCATGGACCGTCGATGAAGATCTTGCTCTCATCAATTACATTGCAAATCATGGTGAAGGTCGATGGAACACTCTTGCTCGTTCAGCTGGACTCAAACGAACTGGCAAGAGCTGTAGATTGAGATGGTTGAATTATCTTCGTCCAGATGTTCGTCGTGGTAACATCACACTTGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGTTGGGGAAACCGATGGTCCAAAATTGCACAATACTTACCGGGAAGAACAGACAACGAGATCAAGAATTATTGGAGAACCCGTGTCCAAAAACATGCCAAACAACTCAAATGTGACGTAAACAGTAAGCAATTCAAAGATGCCATGCGCTACCTTTGGATGCCAAGGTTAGTGGAGCGCATCCAAGCTGCCGCATCCACCTCCGCCACCCGAGCCACCGCCACTAATAATGGTTCACCAAGTGGTACAACAGCGGTCACCACCAACAATACGACATATAGCATAAACAACAATTTTGATGTTCATAGTAGCGCGAACATGTTAACCCCAACAATTATGAACACCAACAGCTTATGTGGTTCACATGTTACACAACGTTATACTCCAGAGAATAGTAGCAATGGCGCCGCGGCTGCATCATCGGATTCATTTGGGACACAAGTTTCGCCTGTCTCGGAATTGACTCAAGATTATTACAATGTCCAAGTTGGTAGTAACAACAATAATAACCCTAATTCTGATTATTACCAACAAGCTCAGCAATTTGGGTTTTTTGATTGCATCACTAGCCCATCTGGATTGTTCCCTCAAATGGATTTCAGTTCCATGGAACCAAACACTCCTTGGATTCAAGGGGACACATCTGACAATTTCTGGAATGTTGAAAACATGTTACTCTTTCAACATCTCAATGACATGTGA

Protein sequence

>MsaT007534.1

MEVEGSVISNSNITMLQSDDELDLRRGPWTVDEDLALINYIANHGEGRWNTLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAASTSATRATATNNGSPSGTTAVTTNNTTYSINNNFDVHSSANMLTPTIMNTNSLCGSHVTQRYTPENSSNGAAAASSDSFGTQVSPVSELTQDYYNVQVGSNNNNNPNSDYYQQAQQFGFFDCITSPSGLFPQMDFSSMEPNTPWIQGDTSDNFWNVENMLLFQHLNDM*