AlfalfaGEDB | MsaG007581

M. sativa ssp. caerulea / MsaG007581

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF13426.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007581	XP_003594732.1	97.849	744	16	0	1	744	1	744	0.0	1511

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007581	sp\|Q9FPR3\|EDR1_ARATH	62.362	271	102	0	453	723	656	926	1.97e-114	370

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007581	tr\|G7IFW1\|G7IFW1_MEDTR	97.849	744	16	0	1	744	1	744	0.0	1511

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000045	MsaG007581	0.805603	2.085736e-49	3.206711e-47
MsaG000070	MsaG007581	0.827265	3.071404e-54	8.227705e-52
MsaG000083	MsaG007581	0.873738	2.401139e-67	3.267290e-64
MsaG000113	MsaG007581	0.885941	1.137438e-71	2.728818e-68
MsaG000140	MsaG007581	0.815461	1.581866e-51	3.093813e-49
MsaG000151	MsaG007581	0.868855	9.694826e-66	1.071081e-62
MsaG000153	MsaG007581	0.873048	4.085108e-67	5.393763e-64
MsaG000188	MsaG007581	0.838800	4.270276e-57	1.605622e-54
MsaG000213	MsaG007581	0.846118	4.993593e-59	2.374346e-56
MsaG000235	MsaG007581	0.873127	3.845652e-67	5.095043e-64

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007581	MtrunA17_Chr2g0294351	97.849	744	16	0	1	744	1	744	0.0	1511
MsaG007581	MtrunA17_Chr4g0068411	67.198	753	220	9	1	743	2	737	0.0	962
MsaG007581	MtrunA17_Chr5g0397931	41.009	634	343	13	88	718	70	675	1.93e-146	444
MsaG007581	MtrunA17_Chr6g0482711	59.028	288	114	1	440	723	630	917	3.01e-116	372
MsaG007581	MtrunA17_Chr1g0151541	60.821	268	105	0	459	726	656	923	1.14e-112	363
MsaG007581	MtrunA17_Chr1g0191171	58.219	292	119	1	442	730	662	953	2.11e-112	363
MsaG007581	MtrunA17_Chr8g0392871	52.160	324	144	2	420	735	696	1016	1.08e-109	357
MsaG007581	MtrunA17_Chr1g0179331	57.818	275	114	1	451	723	540	814	5.88e-104	337
MsaG007581	MtrunA17_Chr3g0132791	58.647	266	108	1	460	723	647	912	5.44e-103	337
MsaG007581	MtrunA17_Chr5g0427651	59.023	266	107	1	460	723	640	905	1.12e-102	336

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG007581	AT5G49470.3	59.274	771	277	13	1	740	1	765	885
MsaG007581	AT3G06620.1	58.648	769	278	12	1	735	1	763	876
MsaG007581	AT1G67890.1	58.824	765	275	13	1	735	1	755	860
MsaG007581	AT5G49470.4	58.268	762	273	14	1	740	1	739	837
MsaG007581	AT1G67890.3	58.607	732	263	13	1	702	1	722	809
MsaG007581	AT1G67890.2	58.607	732	263	13	1	702	1	722	809
MsaG007581	AT5G49470.7	62.519	643	218	8	115	740	2	638	807
MsaG007581	AT3G06630.2	56.772	731	271	12	7	728	2	696	806
MsaG007581	AT3G06640.2	55.080	748	283	10	6	739	11	719	793
MsaG007581	AT3G06640.3	55.080	748	283	10	6	739	11	719	793

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Find 179 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCTGCTTCTGGTTC+CGG	0.357484	2:+20191545	None:intergenic
AAAATCACTCACAATATCTA+CGG	0.546535	2:+20186651	None:intergenic
AAAATGAAGCTTCAGGATCC+TGG	0.495452	2:-20189634	MsaT007581.1:CDS
AAAATGGGAGAGAGTTGGAC+TGG	0.637626	2:-20190516	MsaT007581.1:CDS
AAACGACCGGGAAGAACCCG+AGG	0.574912	2:-20189786	MsaT007581.1:CDS
AAATCTCGATGGATGATTGG+AGG	0.505457	2:+20186523	None:intergenic
AACACGAACATTCTTTGCCT+CGG	0.498813	2:+20189769	None:intergenic
AACCAGAAGAACATGTCTTC+TGG	0.356493	2:-20189704	MsaT007581.1:CDS
AAGAAGTTCTTGGTCTCGAT+GGG	0.527381	2:-20190599	MsaT007581.1:CDS
AAGATAGAAAGACTAGAAGC+TGG	0.511860	2:-20191518	MsaT007581.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	20185291	20191576	20185291	ID=MsaG007581
Chr2	mRNA	20185291	20191576	20185291	ID=MsaT007581.1;Parent=MsaG007581
Chr2	exon	20185291	20185417	20185291	ID=MsaT007581.1.exon13;Parent=MsaT007581.1
Chr2	CDS	20185291	20185417	20185291	ID=cds.MsaT007581.1;Parent=MsaT007581.1
Chr2	exon	20185647	20185741	20185647	ID=MsaT007581.1.exon12;Parent=MsaT007581.1
Chr2	CDS	20185647	20185741	20185647	ID=cds.MsaT007581.1;Parent=MsaT007581.1
Chr2	exon	20185974	20186055	20185974	ID=MsaT007581.1.exon11;Parent=MsaT007581.1
Chr2	CDS	20185974	20186055	20185974	ID=cds.MsaT007581.1;Parent=MsaT007581.1
Chr2	exon	20186154	20186203	20186154	ID=MsaT007581.1.exon10;Parent=MsaT007581.1
Chr2	CDS	20186154	20186203	20186154	ID=cds.MsaT007581.1;Parent=MsaT007581.1
Chr2	exon	20186313	20186381	20186313	ID=MsaT007581.1.exon9;Parent=MsaT007581.1
Chr2	CDS	20186313	20186381	20186313	ID=cds.MsaT007581.1;Parent=MsaT007581.1
Chr2	exon	20186480	20186578	20186480	ID=MsaT007581.1.exon8;Parent=MsaT007581.1
Chr2	CDS	20186480	20186578	20186480	ID=cds.MsaT007581.1;Parent=MsaT007581.1
Chr2	exon	20186663	20186741	20186663	ID=MsaT007581.1.exon7;Parent=MsaT007581.1
Chr2	CDS	20186663	20186741	20186663	ID=cds.MsaT007581.1;Parent=MsaT007581.1
Chr2	exon	20186866	20186966	20186866	ID=MsaT007581.1.exon6;Parent=MsaT007581.1
Chr2	CDS	20186866	20186966	20186866	ID=cds.MsaT007581.1;Parent=MsaT007581.1
Chr2	exon	20188610	20188678	20188610	ID=MsaT007581.1.exon5;Parent=MsaT007581.1
Chr2	CDS	20188610	20188678	20188610	ID=cds.MsaT007581.1;Parent=MsaT007581.1
Chr2	exon	20188899	20188939	20188899	ID=MsaT007581.1.exon4;Parent=MsaT007581.1
Chr2	CDS	20188899	20188939	20188899	ID=cds.MsaT007581.1;Parent=MsaT007581.1
Chr2	exon	20189477	20190152	20189477	ID=MsaT007581.1.exon3;Parent=MsaT007581.1
Chr2	CDS	20189477	20190152	20189477	ID=cds.MsaT007581.1;Parent=MsaT007581.1
Chr2	exon	20190245	20190659	20190245	ID=MsaT007581.1.exon2;Parent=MsaT007581.1
Chr2	CDS	20190245	20190659	20190245	ID=cds.MsaT007581.1;Parent=MsaT007581.1
Chr2	exon	20191245	20191576	20191245	ID=MsaT007581.1.exon1;Parent=MsaT007581.1
Chr2	CDS	20191245	20191576	20191245	ID=cds.MsaT007581.1;Parent=MsaT007581.1

Gene Sequence

>MsaT007581.1

ATGGAATCTCCGGAACCAGAAGCAGAGCTTTTGAAGAAGATAGAAAGACTAGAAGCTGGTCAAGTTCATCTCAAGCAAGAAATGTCAAAGCTGAAGCTTTCGCAGCGTAGAAGGTCTCACTCAGTTTCACCACAACGTTCAAGGTTAGGTGCTTCTGCTTCATCTGCTTCTTCTGCTGCTTCTGCAAGTAGCAAAGGATGTTCTTCACCTCTTCAAAGAGAGAGTCGTAGTAATCATGATCCTCAAAATGGCGGTGGCAAGTATCTCAATATTTTGCAATCAATTGGTCATTCTGTTCATATTTTGGATCTTCAATGTCGTATTATATACTGGAACCCTAGTGCTGAAAATCTATATGGTTATACAGCAGAAGAAGTTCTTGGTCTCGATGGGATTGAAGTGCTTGTTGACCCTAGTGAATTTGATGTAGCTTATGATATATTCAACCGTGTGAAAATGGGAGAGAGTTGGACTGGTCAATTCCCTGTTAAGAATAAGATAGGGGATAGGTTTGTAGTTGTCGCAACCGATACACCTTTCTATGATGATGATGGAAGTTTGGTTGGTGTCATTTGTGTCTCAAGTGATTCAAGACCTTTCCTTGAGAACATAGTTCCTTTTTCAGCTAGGAAGAATGAAGAAAAAGATTCAGGTGTTAATTTTCCTAGAATTGCTATTACAAATAAACTTGGTCTTGATCCAGAGCAGCCACTTCAAAATGCTCTAGCTTCTAAGATCTCAAATTTGGCTACAAAGGTGAGTAACAAAGTCAAGTCTAAAATCCGGACTCGAGAAAATAGTGTTAATGGAGAAGGAGGGAGCGGAGAAATTCATCATTCCGAGCACGGTTTCTCAGACTATGGTCATTCTGACCAGAGAGAGGATGGTGGTAATTCCAGTGGAGCTAGCACGCCCGCAGGAGAGGTGCCTCTGACTCCTTTTGGTTCATTCTCTCGCATCGAAGAGAGATCCCAAGGGAAAAATATGAGAAACTCTGGCGATGAGAGTGAAGAAAAACCTATACACAAAATCATAACTTCTAAGGCGGAAGCATGGATTCAAAAGAAAACTATGTCATGGCCATGGAAAACAAACGACCGGGAAGAACCCGAGGCAAAGAATGTTCGTGTTTCTTGGCCTTGGTTGCAGGGTGATCAAGATAAAGAGCCAGCTAACCAGAAGAACATGTCTTCTGGATTGAAGCCTCCGGAAAGCAGGGCCGCTGAAAGTTATCAACCTGTCCAAAATGAAGCTTCAGGATCCTGGTCCTCCTTCAATGTTAACAGCACAAGTAGTACTAGCAGCTGTGGGAGTGGTAGTGGCAGCAGTTCTGCTGCCAATAATAGAGTGGATGTAGACAGTGATTGTCTAGATTACGAAATTCTGTGGGAGGACCTGACGATTGGAGAGTCAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCTGTTAAGGTTTTCTCAAAGCAAGAATATTCAGAAGATGTTATACAGTCCTTCAGACAAGAGGTGTCTCTCATGAAAAGACTTCGCCATCCAAATATTCTTCTCTTTATGGGCGCAGTGACTTCACCTCAGCGTCTATGCATTGTAACAGAGTTTCTCCCACGCGGAAGCTTATTTCGTTTGCTTCAGAGAAACACGTCCAAACCTGATTGGAGACGACGAGTTCACATGGCCGTAGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCTCCAATCATCCATCGAGATTTAAAGACTTCAAATCTTCTAGTTGACAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTATCAAACATGAAACCTATCTCGAGACTAAGACTGGAAAAGGAACGCCTCAATGGATGGCACCAGAAGTTCTCCGTAACGAACCCTCAAATGAGAAGTCCGACGTTTACAGCTTTGGGGTGATAATGTGGGAACTTGCAACAGAAAAAATCCCTTGGGACACTCTCAATGCAATGCAGGTTATTGGAGCTGTAGGATTTATGAACCATCGGCTAGAAATTCCGGAAGATATTGATCCACAGTGGGCTTCTATAATCGAGAGTTGTTGGCACACTGATCCGGCTCTCCGACCAACATTCCAGGAACTTCTGGAAAGGCTTAAAGAACTTCAGAGACGGTATGCCATTCAGTTCCAAGCAGCCAGATCTGCTGGTGGGGAAAAGACTCAAAAAGAGTCCTAG

Protein sequence

>MsaT007581.1

MESPEPEAELLKKIERLEAGQVHLKQEMSKLKLSQRRRSHSVSPQRSRLGASASSASSAASASSKGCSSPLQRESRSNHDPQNGGGKYLNILQSIGHSVHILDLQCRIIYWNPSAENLYGYTAEEVLGLDGIEVLVDPSEFDVAYDIFNRVKMGESWTGQFPVKNKIGDRFVVVATDTPFYDDDGSLVGVICVSSDSRPFLENIVPFSARKNEEKDSGVNFPRIAITNKLGLDPEQPLQNALASKISNLATKVSNKVKSKIRTRENSVNGEGGSGEIHHSEHGFSDYGHSDQREDGGNSSGASTPAGEVPLTPFGSFSRIEERSQGKNMRNSGDESEEKPIHKIITSKAEAWIQKKTMSWPWKTNDREEPEAKNVRVSWPWLQGDQDKEPANQKNMSSGLKPPESRAAESYQPVQNEASGSWSSFNVNSTSSTSSCGSGSGSSSAANNRVDVDSDCLDYEILWEDLTIGESIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEDVIQSFRQEVSLMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTSKPDWRRRVHMAVDIARGVNYLHHCNPPIIHRDLKTSNLLVDKNWTVKVGDFGLSRIKHETYLETKTGKGTPQWMAPEVLRNEPSNEKSDVYSFGVIMWELATEKIPWDTLNAMQVIGAVGFMNHRLEIPEDIDPQWASIIESCWHTDPALRPTFQELLERLKELQRRYAIQFQAARSAGGEKTQKES*