Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007592 | XP_003594754.1 | 91.860 | 602 | 30 | 4 | 1 | 598 | 1 | 587 | 0.0 | 1108 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007592 | sp|A0A396GMX6|DELA2_MEDTR | 32.308 | 390 | 238 | 6 | 210 | 597 | 158 | 523 | 1.38e-55 | 199 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007592 | tr|A2Q2X8|A2Q2X8_MEDTR | 91.860 | 602 | 30 | 4 | 1 | 598 | 1 | 587 | 0.0 | 1108 |
Gene ID | Type | Classification |
---|---|---|
MsaG007592 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007592 | MtrunA17_Chr2g0294461 | 91.181 | 601 | 36 | 7 | 1 | 598 | 1 | 587 | 0.0 | 1088 |
MsaG007592 | MtrunA17_Chr2g0294471 | 77.907 | 602 | 104 | 9 | 1 | 598 | 2 | 578 | 0.0 | 919 |
MsaG007592 | MtrunA17_Chr7g0270031 | 43.833 | 527 | 251 | 9 | 72 | 598 | 75 | 556 | 1.49e-136 | 409 |
MsaG007592 | MtrunA17_Chr1g0194621 | 45.851 | 482 | 231 | 11 | 123 | 598 | 63 | 520 | 1.08e-131 | 395 |
MsaG007592 | MtrunA17_Chr8g0376381 | 32.308 | 390 | 238 | 6 | 210 | 597 | 158 | 523 | 1.02e-56 | 199 |
MsaG007592 | MtrunA17_Chr3g0110971 | 28.372 | 430 | 274 | 7 | 183 | 597 | 178 | 588 | 4.38e-55 | 196 |
MsaG007592 | MtrunA17_Chr7g0224271 | 30.769 | 403 | 249 | 9 | 208 | 596 | 287 | 673 | 1.35e-47 | 177 |
MsaG007592 | MtrunA17_Chr2g0306641 | 29.545 | 396 | 250 | 8 | 211 | 598 | 115 | 489 | 1.25e-46 | 171 |
MsaG007592 | MtrunA17_Chr4g0057891 | 29.487 | 390 | 257 | 7 | 214 | 596 | 142 | 520 | 4.51e-45 | 167 |
MsaG007592 | MtrunA17_Chr8g0357601 | 30.848 | 389 | 252 | 10 | 214 | 596 | 175 | 552 | 1.87e-43 | 163 |
MsaG007592 | MtrunA17_Chr4g0031711 | 29.367 | 395 | 256 | 9 | 211 | 595 | 351 | 732 | 1.35e-42 | 163 |
MsaG007592 | MtrunA17_Chr4g0031741 | 29.124 | 388 | 250 | 10 | 216 | 595 | 279 | 649 | 1.10e-40 | 157 |
MsaG007592 | MtrunA17_Chr7g0238891 | 28.244 | 393 | 259 | 8 | 212 | 596 | 363 | 740 | 1.79e-39 | 154 |
MsaG007592 | MtrunA17_Chr4g0057291 | 29.049 | 389 | 255 | 11 | 218 | 598 | 289 | 664 | 1.98e-39 | 153 |
MsaG007592 | MtrunA17_Chr5g0445331 | 27.577 | 388 | 259 | 9 | 218 | 596 | 158 | 532 | 1.89e-38 | 149 |
MsaG007592 | MtrunA17_Chr2g0328431 | 29.517 | 393 | 241 | 10 | 216 | 595 | 284 | 653 | 2.54e-38 | 150 |
MsaG007592 | MtrunA17_Chr7g0245601 | 29.947 | 374 | 237 | 12 | 225 | 596 | 442 | 792 | 6.33e-38 | 150 |
MsaG007592 | MtrunA17_Chr2g0290241 | 26.615 | 387 | 265 | 7 | 216 | 596 | 52 | 425 | 6.76e-38 | 145 |
MsaG007592 | MtrunA17_Chr4g0076091 | 26.166 | 386 | 266 | 8 | 216 | 595 | 170 | 542 | 1.46e-37 | 146 |
MsaG007592 | MtrunA17_Chr4g0031701 | 27.979 | 386 | 257 | 8 | 210 | 586 | 243 | 616 | 2.06e-37 | 147 |
MsaG007592 | MtrunA17_Chr4g0031721 | 26.873 | 387 | 262 | 7 | 216 | 595 | 311 | 683 | 2.45e-37 | 147 |
MsaG007592 | MtrunA17_Chr2g0328411 | 28.205 | 390 | 250 | 8 | 216 | 595 | 284 | 653 | 6.69e-37 | 146 |
MsaG007592 | MtrunA17_Chr4g0038761 | 28.989 | 376 | 242 | 9 | 225 | 596 | 88 | 442 | 7.29e-37 | 142 |
MsaG007592 | MtrunA17_Chr5g0447691 | 26.221 | 389 | 259 | 10 | 218 | 596 | 174 | 544 | 2.58e-36 | 142 |
MsaG007592 | MtrunA17_Chr2g0328391 | 27.595 | 395 | 259 | 8 | 212 | 595 | 290 | 668 | 2.86e-36 | 144 |
MsaG007592 | MtrunA17_Chr4g0031731 | 27.865 | 384 | 260 | 7 | 210 | 586 | 243 | 616 | 5.64e-36 | 142 |
MsaG007592 | MtrunA17_Chr3g0101141 | 27.461 | 386 | 258 | 8 | 218 | 596 | 172 | 542 | 8.63e-36 | 141 |
MsaG007592 | MtrunA17_Chr3g0085681 | 26.818 | 440 | 230 | 8 | 222 | 597 | 26 | 437 | 1.58e-34 | 135 |
MsaG007592 | MtrunA17_Chr2g0328341 | 25.515 | 388 | 270 | 6 | 213 | 595 | 264 | 637 | 4.54e-34 | 137 |
MsaG007592 | MtrunA17_Chr1g0183641 | 25.980 | 408 | 270 | 10 | 191 | 595 | 98 | 476 | 4.75e-34 | 135 |
MsaG007592 | MtrunA17_Chr3g0114841 | 26.700 | 397 | 272 | 9 | 211 | 595 | 110 | 499 | 6.43e-34 | 135 |
MsaG007592 | MtrunA17_Chr2g0328381 | 25.515 | 388 | 270 | 6 | 213 | 595 | 267 | 640 | 9.34e-34 | 136 |
MsaG007592 | MtrunA17_Chr4g0039661 | 26.546 | 388 | 254 | 10 | 218 | 596 | 190 | 555 | 5.07e-33 | 133 |
MsaG007592 | MtrunA17_Chr2g0319091 | 26.234 | 385 | 262 | 9 | 218 | 595 | 209 | 578 | 7.29e-33 | 133 |
MsaG007592 | MtrunA17_Chr1g0159461 | 25.131 | 382 | 268 | 6 | 220 | 596 | 224 | 592 | 2.24e-32 | 132 |
MsaG007592 | MtrunA17_Chr2g0328401 | 27.859 | 341 | 213 | 7 | 216 | 544 | 285 | 604 | 7.73e-32 | 130 |
MsaG007592 | MtrunA17_Chr3g0125811 | 26.343 | 391 | 252 | 9 | 220 | 596 | 202 | 570 | 2.74e-31 | 128 |
MsaG007592 | MtrunA17_Chr5g0424131 | 26.585 | 410 | 262 | 12 | 209 | 595 | 105 | 498 | 1.48e-29 | 122 |
MsaG007592 | MtrunA17_Chr1g0200401 | 25.783 | 415 | 264 | 12 | 206 | 596 | 65 | 459 | 5.72e-28 | 117 |
MsaG007592 | MtrunA17_Chr2g0328361 | 24.615 | 390 | 246 | 7 | 213 | 595 | 266 | 614 | 1.73e-26 | 114 |
MsaG007592 | MtrunA17_Chr8g0383981 | 27.228 | 404 | 244 | 15 | 208 | 595 | 126 | 495 | 1.31e-25 | 110 |
MsaG007592 | MtrunA17_Chr3g0085361 | 25.948 | 343 | 191 | 7 | 308 | 597 | 19 | 351 | 4.71e-25 | 107 |
MsaG007592 | MtrunA17_Chr4g0038851 | 37.419 | 155 | 88 | 4 | 446 | 596 | 320 | 469 | 2.08e-23 | 103 |
MsaG007592 | MtrunA17_Chr4g0038851 | 28.374 | 289 | 178 | 9 | 182 | 458 | 1 | 272 | 8.17e-19 | 89.7 |
MsaG007592 | MtrunA17_Chr2g0328371 | 27.586 | 232 | 158 | 5 | 312 | 538 | 13 | 239 | 2.32e-22 | 96.7 |
MsaG007592 | MtrunA17_Chr5g0401131 | 23.454 | 388 | 274 | 8 | 221 | 596 | 114 | 490 | 5.66e-22 | 99.8 |
MsaG007592 | MtrunA17_Chr5g0396491 | 34.615 | 156 | 93 | 4 | 445 | 596 | 328 | 478 | 7.97e-22 | 99.0 |
MsaG007592 | MtrunA17_Chr5g0396491 | 29.555 | 247 | 156 | 6 | 201 | 444 | 33 | 264 | 8.04e-22 | 99.0 |
MsaG007592 | MtrunA17_Chr2g0329591 | 24.176 | 455 | 296 | 14 | 161 | 596 | 27 | 451 | 2.97e-21 | 97.1 |
MsaG007592 | MtrunA17_Chr7g0236851 | 26.034 | 411 | 261 | 12 | 203 | 595 | 271 | 656 | 4.55e-21 | 97.4 |
MsaG007592 | MtrunA17_Chr6g0468561 | 25.313 | 399 | 246 | 14 | 220 | 596 | 294 | 662 | 1.33e-18 | 89.7 |
MsaG007592 | MtrunA17_Chr4g0012071 | 24.675 | 385 | 260 | 12 | 217 | 596 | 192 | 551 | 1.14e-17 | 86.7 |
MsaG007592 | MtrunA17_Chr7g0230731 | 24.409 | 381 | 267 | 8 | 217 | 596 | 368 | 728 | 6.71e-17 | 84.7 |
MsaG007592 | MtrunA17_Chr7g0230771 | 23.885 | 381 | 269 | 9 | 217 | 596 | 371 | 731 | 6.53e-16 | 81.3 |
MsaG007592 | MtrunA17_Chr8g0344101 | 19.395 | 397 | 284 | 8 | 220 | 597 | 222 | 601 | 8.77e-16 | 80.9 |
MsaG007592 | MtrunA17_Chr8g0373561 | 23.377 | 385 | 263 | 12 | 220 | 596 | 181 | 541 | 9.29e-13 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007592 | AT3G03450.1 | 30.457 | 394 | 255 | 7 | 207 | 597 | 169 | 546 | 7.15e-56 | 198 |
MsaG007592 | AT2G01570.1 | 29.592 | 392 | 254 | 6 | 208 | 597 | 211 | 582 | 1.19e-54 | 195 |
MsaG007592 | AT5G17490.1 | 29.563 | 389 | 249 | 8 | 212 | 597 | 151 | 517 | 2.65e-52 | 187 |
MsaG007592 | AT1G14920.1 | 29.517 | 393 | 255 | 6 | 207 | 597 | 158 | 530 | 5.13e-52 | 187 |
MsaG007592 | AT1G66350.1 | 29.820 | 389 | 247 | 6 | 210 | 597 | 144 | 507 | 6.29e-52 | 186 |
MsaG007592 | AT1G07530.1 | 29.825 | 399 | 260 | 6 | 204 | 595 | 379 | 764 | 2.38e-45 | 172 |
MsaG007592 | AT3G46600.2 | 30.928 | 388 | 242 | 9 | 218 | 596 | 1 | 371 | 1.25e-44 | 163 |
MsaG007592 | AT5G59450.1 | 31.633 | 392 | 242 | 11 | 216 | 596 | 222 | 598 | 1.33e-44 | 168 |
MsaG007592 | AT3G46600.1 | 30.867 | 392 | 245 | 9 | 214 | 596 | 205 | 579 | 2.08e-44 | 167 |
MsaG007592 | AT3G46600.3 | 30.867 | 392 | 245 | 9 | 214 | 596 | 173 | 547 | 5.30e-44 | 165 |
MsaG007592 | AT5G41920.1 | 29.471 | 397 | 256 | 9 | 203 | 596 | 25 | 400 | 1.82e-42 | 158 |
MsaG007592 | AT2G29060.2 | 28.645 | 391 | 259 | 7 | 213 | 595 | 276 | 654 | 4.94e-41 | 158 |
MsaG007592 | AT2G29060.1 | 28.645 | 391 | 259 | 7 | 213 | 595 | 313 | 691 | 5.95e-41 | 158 |
MsaG007592 | AT4G17230.1 | 27.979 | 386 | 256 | 8 | 218 | 596 | 155 | 525 | 9.43e-41 | 155 |
MsaG007592 | AT4G17230.2 | 27.979 | 386 | 256 | 8 | 218 | 596 | 155 | 525 | 9.43e-41 | 155 |
MsaG007592 | AT1G55580.1 | 29.710 | 414 | 247 | 10 | 218 | 596 | 41 | 445 | 5.45e-40 | 152 |
MsaG007592 | AT2G29065.1 | 27.320 | 388 | 267 | 7 | 216 | 595 | 247 | 627 | 1.20e-39 | 154 |
MsaG007592 | AT1G07520.2 | 27.157 | 394 | 259 | 9 | 216 | 595 | 149 | 528 | 7.09e-38 | 147 |
MsaG007592 | AT1G07520.4 | 27.157 | 394 | 259 | 9 | 216 | 595 | 149 | 528 | 7.09e-38 | 147 |
MsaG007592 | AT1G07520.1 | 27.157 | 394 | 259 | 9 | 216 | 595 | 313 | 692 | 1.03e-37 | 149 |
MsaG007592 | AT1G07520.3 | 27.157 | 394 | 259 | 9 | 216 | 595 | 314 | 693 | 1.14e-37 | 149 |
MsaG007592 | AT3G54220.1 | 29.570 | 372 | 242 | 9 | 225 | 595 | 297 | 649 | 4.40e-37 | 147 |
MsaG007592 | AT1G63100.2 | 26.817 | 399 | 262 | 9 | 213 | 595 | 269 | 653 | 4.59e-36 | 144 |
MsaG007592 | AT1G63100.1 | 26.817 | 399 | 262 | 9 | 213 | 595 | 244 | 628 | 5.61e-36 | 143 |
MsaG007592 | AT5G66770.1 | 28.250 | 400 | 256 | 11 | 209 | 596 | 204 | 584 | 1.61e-35 | 141 |
MsaG007592 | AT2G37650.1 | 28.101 | 395 | 255 | 9 | 212 | 596 | 338 | 713 | 5.80e-35 | 140 |
MsaG007592 | AT2G37650.2 | 28.101 | 395 | 255 | 9 | 212 | 596 | 326 | 701 | 6.32e-35 | 140 |
MsaG007592 | AT1G50600.3 | 26.098 | 387 | 262 | 8 | 218 | 596 | 156 | 526 | 4.59e-34 | 136 |
MsaG007592 | AT5G48150.1 | 25.326 | 383 | 263 | 9 | 222 | 596 | 123 | 490 | 9.40e-34 | 135 |
MsaG007592 | AT5G48150.4 | 25.326 | 383 | 263 | 9 | 222 | 596 | 123 | 490 | 9.40e-34 | 135 |
MsaG007592 | AT5G48150.2 | 25.326 | 383 | 263 | 9 | 222 | 596 | 123 | 490 | 9.40e-34 | 135 |
MsaG007592 | AT5G48150.3 | 25.326 | 383 | 263 | 9 | 222 | 596 | 123 | 490 | 9.40e-34 | 135 |
MsaG007592 | AT2G04890.1 | 25.131 | 382 | 259 | 9 | 221 | 596 | 53 | 413 | 1.34e-33 | 133 |
MsaG007592 | AT1G50600.2 | 26.098 | 387 | 262 | 8 | 218 | 596 | 231 | 601 | 1.37e-33 | 136 |
MsaG007592 | AT1G50600.1 | 26.098 | 387 | 262 | 8 | 218 | 596 | 227 | 597 | 1.43e-33 | 135 |
MsaG007592 | AT3G50650.1 | 27.596 | 366 | 237 | 9 | 241 | 596 | 195 | 542 | 1.70e-31 | 129 |
MsaG007592 | AT4G08250.1 | 26.716 | 408 | 266 | 13 | 202 | 595 | 88 | 476 | 4.55e-29 | 121 |
MsaG007592 | AT1G21450.1 | 25.377 | 398 | 265 | 11 | 213 | 596 | 214 | 593 | 2.90e-25 | 110 |
MsaG007592 | AT1G50420.1 | 30.597 | 268 | 165 | 8 | 185 | 445 | 15 | 268 | 3.58e-23 | 103 |
MsaG007592 | AT1G50420.1 | 32.278 | 158 | 96 | 3 | 444 | 596 | 328 | 479 | 5.22e-20 | 94.0 |
MsaG007592 | AT3G49950.1 | 25.377 | 398 | 260 | 12 | 218 | 595 | 27 | 407 | 1.17e-21 | 98.2 |
MsaG007592 | AT4G37650.1 | 21.594 | 389 | 287 | 7 | 221 | 596 | 146 | 529 | 6.99e-20 | 94.0 |
MsaG007592 | AT2G45160.1 | 25.210 | 357 | 235 | 10 | 248 | 596 | 307 | 639 | 3.02e-19 | 92.4 |
MsaG007592 | AT4G00150.1 | 27.318 | 399 | 225 | 19 | 216 | 596 | 203 | 554 | 1.51e-18 | 89.7 |
MsaG007592 | AT5G52510.1 | 23.058 | 399 | 260 | 11 | 220 | 596 | 267 | 640 | 2.67e-17 | 86.3 |
MsaG007592 | AT3G60630.1 | 24.503 | 302 | 212 | 8 | 303 | 596 | 329 | 622 | 4.37e-16 | 82.0 |
MsaG007592 | AT3G13840.1 | 20.347 | 403 | 276 | 10 | 210 | 596 | 137 | 510 | 7.75e-11 | 65.1 |
Find 79 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCATCCGGTTAATGATTT+TGG | 0.139114 | 2:-20358603 | MsaT007592.1:CDS |
AACCATTACTATAGGATTTA+TGG | 0.158396 | 2:+20357690 | None:intergenic |
AATGGTCATTGTCTTCTTAT+TGG | 0.198735 | 2:-20357325 | MsaT007592.1:CDS |
CACATGTGTACAGGCTTTAT+TGG | 0.199976 | 2:-20358094 | MsaT007592.1:CDS |
ATGGAAAACTTGTGCAATTT+TGG | 0.227653 | 2:-20359050 | MsaT007592.1:CDS |
CTGTTTCTTTGTCGATTCTT+TGG | 0.253189 | 2:+20358250 | None:intergenic |
GAGTCTCTTTGCTCTAATTT+TGG | 0.257974 | 2:-20358897 | MsaT007592.1:CDS |
TTGATTCTTAATCACCCTTT+TGG | 0.265653 | 2:-20358468 | MsaT007592.1:CDS |
GTTGACATATTGAAGAATTA+TGG | 0.268072 | 2:-20358669 | MsaT007592.1:CDS |
CAAACAGAAACAGAGTTAAT+TGG | 0.268686 | 2:+20357289 | None:intergenic |
GTTCATCCAATGATACATAT+TGG | 0.274609 | 2:-20358992 | MsaT007592.1:CDS |
AGATCCTTGCTAACCTCTTC+AGG | 0.285294 | 2:+20358174 | None:intergenic |
GAAACGGTTCACAAAAGATT+TGG | 0.292025 | 2:+20357639 | None:intergenic |
AAAGTTTCATAATCTTGATA+TGG | 0.312751 | 2:+20358804 | None:intergenic |
TAATGAACCACACGCTTAAC+CGG | 0.323577 | 2:+20358291 | None:intergenic |
ATAACTATATCGAACGAAAA+AGG | 0.330493 | 2:+20357853 | None:intergenic |
TTTCATTTCATTAGGCCCTT+TGG | 0.336220 | 2:+20358965 | None:intergenic |
CAATTAACTCTGTTTCTGTT+TGG | 0.337936 | 2:-20357288 | MsaT007592.1:CDS |
TCGTAAAGCGCGATCATGGC+TGG | 0.345782 | 2:+20358147 | None:intergenic |
TTCATCCAATGATACATATT+GGG | 0.349589 | 2:-20358991 | MsaT007592.1:CDS |
TCGATTGAAGTGCTTGCATT+AGG | 0.355406 | 2:+20358001 | None:intergenic |
TTTGTATCAAGCTGAATTAG+TGG | 0.394060 | 2:-20357389 | MsaT007592.1:CDS |
GGTTTCCCAATATGTATCAT+TGG | 0.395624 | 2:+20358986 | None:intergenic |
GCTAAAGGAGTTTGGTAGAA+TGG | 0.396074 | 2:+20358696 | None:intergenic |
TTCAATATTCACATGTGTAC+AGG | 0.409275 | 2:-20358103 | MsaT007592.1:CDS |
GCAGAAGATGGAGACTATAA+TGG | 0.415425 | 2:-20358924 | MsaT007592.1:CDS |
GTCATTGTCTTCTTATTGGA+TGG | 0.423148 | 2:-20357321 | MsaT007592.1:CDS |
CAAAGAATCGACAAAGAAAC+AGG | 0.426353 | 2:-20358249 | MsaT007592.1:CDS |
ACTAAACCAAAATCATTAAC+CGG | 0.431635 | 2:+20358597 | None:intergenic |
ATGATTGTTTCGAGTTTGTC+TGG | 0.434303 | 2:+20357727 | None:intergenic |
AGGATATTTCCTTCATCATC+AGG | 0.436141 | 2:+20358624 | None:intergenic |
TAATTCTTCAATATGTCAAC+TGG | 0.440835 | 2:+20358672 | None:intergenic |
ATCCAACAATATGCAAAAGA+TGG | 0.448011 | 2:-20358211 | MsaT007592.1:CDS |
CTTCAGTTTCAATATAATTG+AGG | 0.452234 | 2:-20359024 | MsaT007592.1:CDS |
TCGGCGACAACCATTACTAT+AGG | 0.455276 | 2:+20357682 | None:intergenic |
CAACTGGTGCTAAAGGAGTT+TGG | 0.455400 | 2:+20358688 | None:intergenic |
TTGATCTCGAAATTCGTAAA+GGG | 0.457694 | 2:-20358038 | MsaT007592.1:CDS |
ATCTTCGTAAAGCGCGATCA+TGG | 0.462271 | 2:+20358143 | None:intergenic |
AGGAATATTGTGGCTGAAGA+AGG | 0.463268 | 2:-20357505 | MsaT007592.1:CDS |
AATATGTCAACTGGTGCTAA+AGG | 0.468976 | 2:+20358681 | None:intergenic |
TGTCTTCTTATTGGATGGAA+AGG | 0.484516 | 2:-20357316 | MsaT007592.1:CDS |
CGTAAAGCGCGATCATGGCT+GGG | 0.486306 | 2:+20358148 | None:intergenic |
GCTTGCACATTTGATATGAA+TGG | 0.486563 | 2:-20357343 | MsaT007592.1:CDS |
TCTTCGTCGGAATCTGCATC+AGG | 0.487554 | 2:-20358492 | MsaT007592.1:CDS |
TTTCATAATCTTGATATGGT+TGG | 0.489594 | 2:+20358808 | None:intergenic |
AAATTCGTAAAGGGTGTCAA+TGG | 0.493879 | 2:-20358029 | MsaT007592.1:CDS |
ATCTTCGAAGACAGGTAACC+CGG | 0.500315 | 2:-20358310 | MsaT007592.1:CDS |
AATATTGAAACTTGACTGAA+TGG | 0.501754 | 2:+20358117 | None:intergenic |
GAGTCTTTATCTTCGAAGAC+AGG | 0.510353 | 2:-20358318 | MsaT007592.1:CDS |
CAAAATCATTAACCGGATGA+AGG | 0.511083 | 2:+20358604 | None:intergenic |
ATAGAGATCATGAAGATGGC+TGG | 0.512677 | 2:-20358537 | MsaT007592.1:CDS |
GGACACTGGTAAAAGATTGA+AGG | 0.513135 | 2:-20357899 | MsaT007592.1:CDS |
ATTGATCTCGAAATTCGTAA+AGG | 0.516624 | 2:-20358039 | MsaT007592.1:CDS |
TGAAGGAAATATCCTTCATC+CGG | 0.532316 | 2:-20358616 | MsaT007592.1:CDS |
AACCATAAATCCTATAGTAA+TGG | 0.541375 | 2:-20357692 | MsaT007592.1:CDS |
AACTATAGAGATCATGAAGA+TGG | 0.543848 | 2:-20358541 | MsaT007592.1:CDS |
AGGCTATTACCTGATGATGA+AGG | 0.549055 | 2:-20358633 | MsaT007592.1:CDS |
ATACATATTGGGAAACCAAA+GGG | 0.554956 | 2:-20358980 | MsaT007592.1:CDS |
ATCTTTATTTGATCCTGAAG+AGG | 0.563321 | 2:-20358187 | MsaT007592.1:CDS |
TTTCACAAGATTTGGAATGG+TGG | 0.567481 | 2:-20357434 | MsaT007592.1:CDS |
CATACAATCATCATCTTCGT+CGG | 0.575813 | 2:-20358505 | MsaT007592.1:CDS |
GTTATCTTTAGAAGTTCGAG+TGG | 0.580483 | 2:+20357967 | None:intergenic |
TCATGGTATTAGGAATATTG+TGG | 0.583709 | 2:-20357515 | MsaT007592.1:CDS |
ATTGAACCATGTCAAAGTGT+AGG | 0.587676 | 2:+20358775 | None:intergenic |
GTGGCTAAAAGATTTGCTTG+TGG | 0.588267 | 2:-20357370 | MsaT007592.1:CDS |
GATACATATTGGGAAACCAA+AGG | 0.590198 | 2:-20358981 | MsaT007592.1:CDS |
ATTGTGATTAGCTTCAATCT+CGG | 0.594753 | 2:+20357663 | None:intergenic |
TGATCCTGAAGAGGTTAGCA+AGG | 0.599740 | 2:-20358178 | MsaT007592.1:CDS |
AATGAACCACACGCTTAACC+GGG | 0.608506 | 2:+20358292 | None:intergenic |
TTAGCTTGTGCTGAGAAAGT+CGG | 0.613798 | 2:-20358384 | MsaT007592.1:CDS |
TGATAACCTACACTTTGACA+TGG | 0.617264 | 2:-20358781 | MsaT007592.1:CDS |
CACTTCGAAGCATATAGTTG+AGG | 0.629728 | 2:-20357920 | MsaT007592.1:CDS |
AGGTAACCCGGTTAAGCGTG+TGG | 0.631363 | 2:-20358298 | MsaT007592.1:CDS |
ATATTGAAGAATTATGGCAA+AGG | 0.640071 | 2:-20358663 | MsaT007592.1:CDS |
AAGATAACAGCTATTGAGAG+CGG | 0.640580 | 2:-20357952 | MsaT007592.1:CDS |
AAGCATATAGTTGAGGACAC+TGG | 0.647935 | 2:-20357913 | MsaT007592.1:CDS |
ATTATGGCAAAGGATTCAAG+AGG | 0.694168 | 2:-20358653 | MsaT007592.1:CDS |
GAAATGTTAAGATTGATGTG+TGG | 0.717247 | 2:-20357465 | MsaT007592.1:CDS |
AGATTCGGAAGAAACAGTCG+CGG | 0.728949 | 2:-20357788 | MsaT007592.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 20357276 | 20359072 | 20357276 | ID=MsaG007592 |
Chr2 | mRNA | 20357276 | 20359072 | 20357276 | ID=MsaT007592.1;Parent=MsaG007592 |
Chr2 | exon | 20357276 | 20359072 | 20357276 | ID=MsaT007592.1.exon1;Parent=MsaT007592.1 |
Chr2 | CDS | 20357276 | 20359072 | 20357276 | ID=cds.MsaT007592.1;Parent=MsaT007592.1 |
Gene Sequence |
Protein sequence |