Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007594 | XP_003594757.1 | 90.635 | 598 | 35 | 2 | 1 | 598 | 1 | 577 | 0.0 | 1095 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007594 | sp|Q8GXW1|RGL2_ARATH | 30.711 | 394 | 249 | 7 | 211 | 597 | 170 | 546 | 2.26e-57 | 205 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007594 | tr|A0A396J7Z1|A0A396J7Z1_MEDTR | 90.635 | 598 | 35 | 2 | 1 | 598 | 2 | 578 | 0.0 | 1095 |
Gene ID | Type | Classification |
---|---|---|
MsaG007594 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007594 | MtrunA17_Chr2g0294471 | 90.635 | 598 | 35 | 2 | 1 | 598 | 2 | 578 | 0.0 | 1095 |
MsaG007594 | MtrunA17_Chr2g0294461 | 81.198 | 601 | 96 | 6 | 1 | 598 | 1 | 587 | 0.0 | 979 |
MsaG007594 | MtrunA17_Chr7g0270031 | 43.662 | 497 | 261 | 5 | 103 | 598 | 78 | 556 | 2.02e-132 | 398 |
MsaG007594 | MtrunA17_Chr1g0194621 | 44.196 | 491 | 242 | 9 | 117 | 598 | 53 | 520 | 1.22e-126 | 382 |
MsaG007594 | MtrunA17_Chr3g0110971 | 30.000 | 400 | 250 | 7 | 211 | 597 | 206 | 588 | 4.87e-57 | 202 |
MsaG007594 | MtrunA17_Chr8g0376381 | 31.347 | 386 | 240 | 7 | 215 | 597 | 160 | 523 | 1.18e-54 | 194 |
MsaG007594 | MtrunA17_Chr7g0224271 | 30.446 | 404 | 248 | 11 | 210 | 596 | 286 | 673 | 4.17e-48 | 178 |
MsaG007594 | MtrunA17_Chr2g0306641 | 28.061 | 392 | 254 | 9 | 214 | 596 | 115 | 487 | 1.15e-42 | 160 |
MsaG007594 | MtrunA17_Chr8g0357601 | 31.443 | 388 | 248 | 12 | 217 | 596 | 175 | 552 | 3.87e-42 | 160 |
MsaG007594 | MtrunA17_Chr4g0038851 | 29.060 | 468 | 243 | 15 | 196 | 596 | 24 | 469 | 4.45e-42 | 158 |
MsaG007594 | MtrunA17_Chr4g0038761 | 29.610 | 385 | 225 | 8 | 228 | 596 | 88 | 442 | 1.16e-41 | 156 |
MsaG007594 | MtrunA17_Chr7g0245601 | 31.720 | 372 | 230 | 11 | 228 | 596 | 442 | 792 | 2.95e-41 | 159 |
MsaG007594 | MtrunA17_Chr4g0057891 | 28.148 | 405 | 266 | 12 | 206 | 596 | 127 | 520 | 2.51e-40 | 154 |
MsaG007594 | MtrunA17_Chr5g0445331 | 27.154 | 383 | 264 | 9 | 221 | 596 | 158 | 532 | 7.85e-36 | 141 |
MsaG007594 | MtrunA17_Chr4g0057291 | 27.487 | 382 | 253 | 11 | 225 | 595 | 293 | 661 | 8.69e-36 | 142 |
MsaG007594 | MtrunA17_Chr3g0085681 | 27.400 | 427 | 241 | 8 | 225 | 597 | 26 | 437 | 9.72e-36 | 139 |
MsaG007594 | MtrunA17_Chr7g0238891 | 27.621 | 391 | 261 | 9 | 215 | 596 | 363 | 740 | 1.73e-35 | 142 |
MsaG007594 | MtrunA17_Chr2g0290241 | 25.455 | 385 | 269 | 8 | 219 | 596 | 52 | 425 | 2.15e-35 | 138 |
MsaG007594 | MtrunA17_Chr4g0076091 | 25.260 | 384 | 269 | 9 | 219 | 595 | 170 | 542 | 8.86e-35 | 138 |
MsaG007594 | MtrunA17_Chr1g0183641 | 28.218 | 404 | 259 | 12 | 196 | 595 | 100 | 476 | 1.19e-34 | 137 |
MsaG007594 | MtrunA17_Chr4g0031711 | 26.972 | 393 | 265 | 8 | 214 | 595 | 351 | 732 | 1.53e-34 | 139 |
MsaG007594 | MtrunA17_Chr4g0031741 | 26.494 | 385 | 261 | 9 | 219 | 595 | 279 | 649 | 5.25e-34 | 137 |
MsaG007594 | MtrunA17_Chr3g0101141 | 26.684 | 386 | 258 | 10 | 221 | 596 | 172 | 542 | 1.26e-33 | 135 |
MsaG007594 | MtrunA17_Chr4g0039661 | 26.702 | 382 | 258 | 8 | 221 | 596 | 190 | 555 | 2.91e-32 | 131 |
MsaG007594 | MtrunA17_Chr4g0031721 | 25.191 | 393 | 258 | 8 | 219 | 595 | 311 | 683 | 1.82e-31 | 129 |
MsaG007594 | MtrunA17_Chr2g0328431 | 27.013 | 385 | 258 | 8 | 219 | 595 | 284 | 653 | 1.93e-31 | 129 |
MsaG007594 | MtrunA17_Chr5g0447691 | 25.882 | 340 | 231 | 7 | 221 | 551 | 174 | 501 | 1.95e-31 | 128 |
MsaG007594 | MtrunA17_Chr3g0114841 | 26.933 | 401 | 263 | 11 | 214 | 595 | 110 | 499 | 7.45e-31 | 126 |
MsaG007594 | MtrunA17_Chr2g0328391 | 25.126 | 398 | 262 | 8 | 215 | 595 | 290 | 668 | 1.15e-30 | 127 |
MsaG007594 | MtrunA17_Chr2g0319091 | 24.125 | 543 | 363 | 17 | 88 | 595 | 50 | 578 | 1.33e-30 | 126 |
MsaG007594 | MtrunA17_Chr4g0031701 | 26.873 | 387 | 257 | 11 | 213 | 586 | 243 | 616 | 1.50e-30 | 126 |
MsaG007594 | MtrunA17_Chr2g0328411 | 25.974 | 385 | 262 | 8 | 219 | 595 | 284 | 653 | 3.81e-30 | 125 |
MsaG007594 | MtrunA17_Chr3g0125811 | 25.581 | 387 | 253 | 10 | 225 | 596 | 204 | 570 | 1.27e-29 | 123 |
MsaG007594 | MtrunA17_Chr2g0328341 | 24.870 | 386 | 272 | 8 | 216 | 595 | 264 | 637 | 2.86e-29 | 122 |
MsaG007594 | MtrunA17_Chr4g0031731 | 25.974 | 385 | 263 | 10 | 213 | 586 | 243 | 616 | 6.96e-29 | 121 |
MsaG007594 | MtrunA17_Chr1g0159461 | 25.065 | 387 | 255 | 9 | 225 | 596 | 226 | 592 | 1.69e-28 | 120 |
MsaG007594 | MtrunA17_Chr2g0328381 | 24.352 | 386 | 274 | 8 | 216 | 595 | 267 | 640 | 6.02e-28 | 119 |
MsaG007594 | MtrunA17_Chr1g0200401 | 26.555 | 418 | 258 | 14 | 209 | 598 | 65 | 461 | 4.72e-27 | 114 |
MsaG007594 | MtrunA17_Chr5g0396491 | 32.296 | 257 | 156 | 7 | 190 | 445 | 25 | 264 | 6.30e-25 | 108 |
MsaG007594 | MtrunA17_Chr5g0396491 | 31.579 | 152 | 102 | 2 | 446 | 596 | 328 | 478 | 1.14e-19 | 92.4 |
MsaG007594 | MtrunA17_Chr8g0383981 | 27.204 | 397 | 250 | 14 | 211 | 595 | 126 | 495 | 1.05e-24 | 108 |
MsaG007594 | MtrunA17_Chr2g0328401 | 24.551 | 334 | 230 | 7 | 219 | 544 | 285 | 604 | 6.13e-24 | 106 |
MsaG007594 | MtrunA17_Chr3g0085361 | 25.073 | 343 | 195 | 7 | 308 | 597 | 18 | 351 | 2.06e-23 | 102 |
MsaG007594 | MtrunA17_Chr2g0328361 | 23.529 | 391 | 246 | 8 | 216 | 595 | 266 | 614 | 2.80e-23 | 104 |
MsaG007594 | MtrunA17_Chr5g0424131 | 23.382 | 479 | 317 | 15 | 149 | 595 | 38 | 498 | 3.06e-23 | 103 |
MsaG007594 | MtrunA17_Chr5g0401131 | 25.445 | 393 | 255 | 13 | 225 | 596 | 115 | 490 | 3.77e-22 | 100 |
MsaG007594 | MtrunA17_Chr4g0012071 | 24.934 | 381 | 261 | 10 | 220 | 596 | 192 | 551 | 2.16e-21 | 98.2 |
MsaG007594 | MtrunA17_Chr7g0230731 | 25.132 | 378 | 265 | 8 | 220 | 596 | 368 | 728 | 1.14e-20 | 96.7 |
MsaG007594 | MtrunA17_Chr7g0236851 | 25.679 | 405 | 267 | 13 | 206 | 595 | 271 | 656 | 2.02e-20 | 95.5 |
MsaG007594 | MtrunA17_Chr2g0329591 | 27.336 | 289 | 193 | 8 | 225 | 508 | 75 | 351 | 3.95e-20 | 93.6 |
MsaG007594 | MtrunA17_Chr2g0328371 | 27.273 | 220 | 149 | 6 | 313 | 526 | 13 | 227 | 7.36e-20 | 89.4 |
MsaG007594 | MtrunA17_Chr7g0230771 | 24.339 | 378 | 268 | 8 | 220 | 596 | 371 | 731 | 1.46e-18 | 89.7 |
MsaG007594 | MtrunA17_Chr6g0468561 | 29.242 | 277 | 163 | 11 | 338 | 596 | 401 | 662 | 3.93e-17 | 85.1 |
MsaG007594 | MtrunA17_Chr8g0344101 | 20.596 | 403 | 282 | 11 | 217 | 597 | 215 | 601 | 2.12e-13 | 73.2 |
MsaG007594 | MtrunA17_Chr8g0373561 | 25.627 | 359 | 220 | 14 | 223 | 563 | 181 | 510 | 1.41e-12 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007594 | AT3G03450.1 | 30.711 | 394 | 249 | 7 | 211 | 597 | 170 | 546 | 2.30e-58 | 205 |
MsaG007594 | AT1G66350.1 | 30.233 | 387 | 245 | 8 | 213 | 597 | 144 | 507 | 9.64e-55 | 194 |
MsaG007594 | AT5G17490.1 | 31.008 | 387 | 243 | 9 | 215 | 597 | 151 | 517 | 6.82e-54 | 192 |
MsaG007594 | AT1G14920.1 | 30.946 | 391 | 247 | 8 | 211 | 597 | 159 | 530 | 2.06e-53 | 191 |
MsaG007594 | AT2G01570.1 | 30.102 | 392 | 249 | 8 | 211 | 597 | 211 | 582 | 2.40e-53 | 192 |
MsaG007594 | AT5G41920.1 | 30.946 | 391 | 245 | 11 | 211 | 596 | 30 | 400 | 1.01e-44 | 164 |
MsaG007594 | AT3G54220.1 | 31.622 | 370 | 234 | 8 | 228 | 595 | 297 | 649 | 1.50e-42 | 162 |
MsaG007594 | AT1G07530.1 | 28.212 | 397 | 266 | 7 | 207 | 595 | 379 | 764 | 1.51e-38 | 152 |
MsaG007594 | AT5G59450.1 | 29.457 | 387 | 254 | 11 | 219 | 596 | 222 | 598 | 1.10e-36 | 145 |
MsaG007594 | AT3G46600.2 | 29.396 | 381 | 246 | 10 | 225 | 596 | 5 | 371 | 1.60e-36 | 140 |
MsaG007594 | AT2G29060.2 | 27.763 | 389 | 262 | 7 | 216 | 595 | 276 | 654 | 1.77e-36 | 145 |
MsaG007594 | AT1G55580.1 | 27.711 | 415 | 251 | 9 | 221 | 596 | 41 | 445 | 1.97e-36 | 142 |
MsaG007594 | AT2G29060.1 | 27.763 | 389 | 262 | 7 | 216 | 595 | 313 | 691 | 2.08e-36 | 145 |
MsaG007594 | AT3G46600.1 | 29.049 | 389 | 253 | 10 | 217 | 596 | 205 | 579 | 2.93e-36 | 143 |
MsaG007594 | AT3G46600.3 | 29.049 | 389 | 253 | 10 | 217 | 596 | 173 | 547 | 7.28e-36 | 142 |
MsaG007594 | AT1G63100.2 | 25.000 | 400 | 265 | 10 | 216 | 595 | 269 | 653 | 6.69e-35 | 140 |
MsaG007594 | AT1G63100.1 | 25.000 | 400 | 265 | 10 | 216 | 595 | 244 | 628 | 7.47e-35 | 140 |
MsaG007594 | AT5G66770.1 | 27.204 | 397 | 261 | 10 | 212 | 596 | 204 | 584 | 5.84e-34 | 137 |
MsaG007594 | AT2G04890.1 | 25.729 | 377 | 258 | 7 | 225 | 596 | 54 | 413 | 8.41e-34 | 134 |
MsaG007594 | AT2G29065.1 | 25.000 | 384 | 266 | 9 | 225 | 595 | 253 | 627 | 1.46e-33 | 136 |
MsaG007594 | AT4G17230.1 | 25.648 | 386 | 262 | 9 | 221 | 596 | 155 | 525 | 1.91e-33 | 134 |
MsaG007594 | AT4G17230.2 | 25.648 | 386 | 262 | 9 | 221 | 596 | 155 | 525 | 1.91e-33 | 134 |
MsaG007594 | AT5G48150.1 | 24.021 | 383 | 273 | 8 | 221 | 596 | 119 | 490 | 3.51e-32 | 130 |
MsaG007594 | AT5G48150.4 | 24.021 | 383 | 273 | 8 | 221 | 596 | 119 | 490 | 3.51e-32 | 130 |
MsaG007594 | AT5G48150.2 | 24.021 | 383 | 273 | 8 | 221 | 596 | 119 | 490 | 3.51e-32 | 130 |
MsaG007594 | AT5G48150.3 | 24.021 | 383 | 273 | 8 | 221 | 596 | 119 | 490 | 3.51e-32 | 130 |
MsaG007594 | AT1G07520.2 | 24.433 | 397 | 281 | 9 | 210 | 595 | 140 | 528 | 6.76e-32 | 130 |
MsaG007594 | AT1G07520.4 | 24.433 | 397 | 281 | 9 | 210 | 595 | 140 | 528 | 6.76e-32 | 130 |
MsaG007594 | AT1G07520.3 | 24.433 | 397 | 281 | 9 | 210 | 595 | 305 | 693 | 7.25e-32 | 131 |
MsaG007594 | AT1G07520.1 | 24.433 | 397 | 281 | 9 | 210 | 595 | 304 | 692 | 7.69e-32 | 131 |
MsaG007594 | AT1G50600.3 | 24.868 | 378 | 267 | 7 | 225 | 596 | 160 | 526 | 1.48e-29 | 123 |
MsaG007594 | AT2G37650.2 | 26.357 | 387 | 269 | 7 | 215 | 596 | 326 | 701 | 2.03e-29 | 124 |
MsaG007594 | AT2G37650.1 | 26.357 | 387 | 269 | 7 | 215 | 596 | 338 | 713 | 2.29e-29 | 124 |
MsaG007594 | AT3G50650.1 | 26.462 | 359 | 231 | 10 | 252 | 596 | 203 | 542 | 2.58e-29 | 122 |
MsaG007594 | AT1G50600.1 | 24.868 | 378 | 267 | 7 | 225 | 596 | 231 | 597 | 3.66e-29 | 122 |
MsaG007594 | AT1G50600.2 | 24.868 | 378 | 267 | 7 | 225 | 596 | 235 | 601 | 4.25e-29 | 122 |
MsaG007594 | AT4G08250.1 | 25.791 | 411 | 263 | 12 | 205 | 595 | 88 | 476 | 2.87e-27 | 115 |
MsaG007594 | AT1G21450.1 | 25.575 | 348 | 239 | 8 | 216 | 553 | 214 | 551 | 2.17e-22 | 102 |
MsaG007594 | AT1G50420.1 | 30.451 | 266 | 166 | 8 | 188 | 446 | 15 | 268 | 7.05e-22 | 99.8 |
MsaG007594 | AT1G50420.1 | 31.410 | 156 | 95 | 4 | 447 | 596 | 330 | 479 | 2.24e-18 | 89.0 |
MsaG007594 | AT4G00150.1 | 26.923 | 390 | 235 | 14 | 219 | 596 | 203 | 554 | 5.99e-21 | 97.4 |
MsaG007594 | AT2G45160.1 | 24.862 | 362 | 244 | 10 | 242 | 596 | 299 | 639 | 4.72e-20 | 94.7 |
MsaG007594 | AT3G60630.1 | 25.914 | 301 | 202 | 8 | 307 | 596 | 332 | 622 | 1.76e-19 | 92.8 |
MsaG007594 | AT4G37650.1 | 22.951 | 427 | 276 | 15 | 199 | 596 | 127 | 529 | 3.35e-18 | 88.6 |
MsaG007594 | AT3G49950.1 | 24.103 | 390 | 264 | 12 | 225 | 595 | 31 | 407 | 2.83e-17 | 84.7 |
MsaG007594 | AT5G52510.1 | 25.632 | 277 | 184 | 6 | 337 | 596 | 369 | 640 | 1.10e-15 | 80.9 |
MsaG007594 | AT3G13840.1 | 26.335 | 281 | 183 | 11 | 222 | 491 | 145 | 412 | 2.47e-11 | 67.0 |
Find 73 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAATCTTCTTTGCATCTTTA+AGG | 0.061011 | 2:+20396163 | None:intergenic |
AATATCTCGACTGGTGTTAA+AGG | 0.227086 | 2:+20396768 | None:intergenic |
CTTTGAAGTGTATGTGTTTC+CGG | 0.229764 | 2:+20396029 | None:intergenic |
CTGTTTCTTTGTCGATTCTT+TGG | 0.234871 | 2:+20396340 | None:intergenic |
TGTACTTCAGTTATGGTATT+AGG | 0.241607 | 2:-20395621 | MsaT007594.1:CDS |
TTCACTTGCTGAATCACTTT+TGG | 0.248339 | 2:-20396493 | MsaT007594.1:CDS |
TTGATTCTTAATCACCCTTT+TGG | 0.256538 | 2:-20396558 | MsaT007594.1:CDS |
GAGTCTCTTTGCTCTAATTT+TGG | 0.258364 | 2:-20396993 | MsaT007594.1:CDS |
CAAACAGAAACAGAGTTAAT+TGG | 0.268686 | 2:+20395388 | None:intergenic |
TTATGGTATTAGGAATATTT+TGG | 0.269222 | 2:-20395611 | MsaT007594.1:CDS |
ATGGAAAACTTGTGGGAATT+TGG | 0.283067 | 2:-20397149 | MsaT007594.1:CDS |
TAACGAACCACACGCTTAAC+AGG | 0.286581 | 2:+20396381 | None:intergenic |
AGATCCTTGCTAACCTCTTC+AGG | 0.292320 | 2:+20396270 | None:intergenic |
ATAATTGTATTGAACGAAAA+AGG | 0.305796 | 2:+20395949 | None:intergenic |
AAAGTTTCATAATCTTGATA+TGG | 0.312751 | 2:+20396897 | None:intergenic |
TCTTCCTCAAAATCTATATC+AGG | 0.317310 | 2:-20396582 | MsaT007594.1:CDS |
TTGTGGGAATTTGGTGAATT+CGG | 0.328885 | 2:-20397140 | MsaT007594.1:CDS |
CAATTAACTCTGTTTCTGTT+TGG | 0.337936 | 2:-20395387 | MsaT007594.1:CDS |
GAATTTGGTGAATTCGGTTT+TGG | 0.347113 | 2:-20397134 | MsaT007594.1:CDS |
TCAATTGAAGCGCTTGCATT+AGG | 0.365227 | 2:+20396097 | None:intergenic |
ACTAAATCAAAATCATTAAC+AGG | 0.380198 | 2:+20396684 | None:intergenic |
AACATTGAAACTTTAACAAA+TGG | 0.394609 | 2:+20396213 | None:intergenic |
AATGGTCATTGTCTTCTTGT+TGG | 0.397166 | 2:-20395424 | MsaT007594.1:CDS |
TCTTGCACATTTGATATGAA+TGG | 0.412387 | 2:-20395442 | MsaT007594.1:CDS |
CAAAGAATCGACAAAGAAAC+AGG | 0.418322 | 2:-20396339 | MsaT007594.1:CDS |
GTCTTTGTATCAAGCTGAAT+TGG | 0.419059 | 2:-20395491 | MsaT007594.1:CDS |
AATGAGAGTAAGTTGTCAAC+TGG | 0.424534 | 2:-20396648 | MsaT007594.1:CDS |
TTGATCTCGAAATTCGTAAA+GGG | 0.428901 | 2:-20396134 | MsaT007594.1:CDS |
AACATCTTCTTTCTCTTCAT+CGG | 0.443269 | 2:+20396515 | None:intergenic |
GATTCTTTGGCAAAGTGCTT+CGG | 0.447077 | 2:+20396353 | None:intergenic |
GAAGATCTAGGAGACTCTAA+TGG | 0.460843 | 2:-20397020 | MsaT007594.1:CDS |
CAAAATGGAAGAATTCTTGT+AGG | 0.470211 | 2:+20396828 | None:intergenic |
TTTCTCTTCATCGGAGAGAC+CGG | 0.476719 | 2:+20396524 | None:intergenic |
TGTCTTCTTGTTGGATGGAA+GGG | 0.477569 | 2:-20395415 | MsaT007594.1:CDS |
ATCTGTGATGGAAAACTTGT+GGG | 0.486830 | 2:-20397156 | None:intergenic |
TCGGCTACGACCATTACTAT+AGG | 0.488277 | 2:+20395778 | None:intergenic |
TTTCATAATCTTGATATGGT+TGG | 0.489594 | 2:+20396901 | None:intergenic |
AACTCTTTATCTTCGAAGAC+AGG | 0.490618 | 2:-20396408 | MsaT007594.1:CDS |
ATTGATCTCGAAATTCGTAA+AGG | 0.493507 | 2:-20396135 | MsaT007594.1:CDS |
GAATCACTGTACTTCAGTTA+TGG | 0.497629 | 2:-20395628 | MsaT007594.1:CDS |
GGAGATATCATGAAGATAGC+TGG | 0.498257 | 2:-20396627 | MsaT007594.1:CDS |
TTGTCTTCTTGTTGGATGGA+AGG | 0.499303 | 2:-20395416 | MsaT007594.1:CDS |
TTTCATTGTATCAAGTCCCT+TGG | 0.502952 | 2:+20397064 | None:intergenic |
CCGGAGAAAGAAAATCCAAA+AGG | 0.504198 | 2:+20396543 | None:intergenic |
GTCATTGTCTTCTTGTTGGA+TGG | 0.509549 | 2:-20395420 | MsaT007594.1:CDS |
CAAAATCATTAACAGGATGA+AGG | 0.518378 | 2:+20396691 | None:intergenic |
CTCTCATGACTGTTTCAAGT+TGG | 0.524579 | 2:+20395818 | None:intergenic |
AGAAGCTCATCTTCTTGTGA+TGG | 0.534656 | 2:+20396954 | None:intergenic |
ATCTTTATTTGATCCTGAAG+AGG | 0.540063 | 2:-20396283 | MsaT007594.1:CDS |
ACTTGAGCTTCTAAAGATAA+CGG | 0.547553 | 2:-20396061 | MsaT007594.1:CDS |
AACTATAAATCCTATAGTAA+TGG | 0.549134 | 2:-20395788 | MsaT007594.1:CDS |
CGGAGAAAGAAAATCCAAAA+GGG | 0.549231 | 2:+20396544 | None:intergenic |
GTTATCTTTAGAAGCTCAAG+TGG | 0.552221 | 2:+20396063 | None:intergenic |
AAATTCGTAAAGGGTTACAT+TGG | 0.553017 | 2:-20396125 | MsaT007594.1:CDS |
AAGATAACGGCTATTGCCAC+CGG | 0.561951 | 2:-20396048 | MsaT007594.1:CDS |
TCGACTGGTGTTAAAGGCGA+TGG | 0.563201 | 2:+20396774 | None:intergenic |
TGTTTGGAAGATTGTATGAA+AGG | 0.565315 | 2:-20395676 | MsaT007594.1:CDS |
TGATAACTTCAACATTGGCA+TGG | 0.568588 | 2:-20396874 | MsaT007594.1:CDS |
ATTGTGATTAGCTTCAGTCT+CGG | 0.571904 | 2:+20395759 | None:intergenic |
AATCTGTGATGGAAAACTTG+TGG | 0.585803 | 2:-20397157 | None:intergenic |
AGGTTATCACCTGATGATGA+AGG | 0.586177 | 2:-20396720 | MsaT007594.1:CDS |
TGATCCTGAAGAGGTTAGCA+AGG | 0.599740 | 2:-20396274 | MsaT007594.1:CDS |
CTGGTGTTAAAGGCGATGGT+TGG | 0.604359 | 2:+20396778 | None:intergenic |
GTTGCTAAAAGATTTCCTTG+TGG | 0.611038 | 2:-20395469 | MsaT007594.1:CDS |
AAATTGAGAGTAAACTGCAA+CGG | 0.631573 | 2:+20395870 | None:intergenic |
TCATGAAGATAGCTGGAACA+AGG | 0.635820 | 2:-20396620 | MsaT007594.1:CDS |
CGAATGTGAAGATTGATGTG+TGG | 0.657727 | 2:-20395564 | MsaT007594.1:CDS |
AGGTAACCCTGTTAAGCGTG+TGG | 0.660619 | 2:-20396388 | MsaT007594.1:CDS |
AACGAACCACACGCTTAACA+GGG | 0.662030 | 2:+20396382 | None:intergenic |
AAGCTTATAGTTGAAGACAC+CGG | 0.666214 | 2:-20396009 | MsaT007594.1:CDS |
ATTATGGCAAAGGATTCAAG+AGG | 0.672484 | 2:-20396740 | MsaT007594.1:CDS |
TGAAGTGTATGTGTTTCCGG+TGG | 0.687997 | 2:+20396032 | None:intergenic |
AATGTGCAAGAATTTCCACA+AGG | 0.746520 | 2:+20395454 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 20395375 | 20397171 | 20395375 | ID=MsaG007594 |
Chr2 | mRNA | 20395375 | 20397171 | 20395375 | ID=MsaT007594.1;Parent=MsaG007594 |
Chr2 | exon | 20395375 | 20397171 | 20395375 | ID=MsaT007594.1.exon1;Parent=MsaT007594.1 |
Chr2 | CDS | 20395375 | 20397171 | 20395375 | ID=cds.MsaT007594.1;Parent=MsaT007594.1 |
Gene Sequence |
Protein sequence |