AlfalfaGEDB | MsaG007720

M. sativa ssp. caerulea / MsaG007720

KEGG: K15032
GO: -
PFAM: PF02536.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007720	KEH37235.1	96.212	132	5	0	1	132	248	379	4.83e-87	268

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007720	tr\|A0A072VGE0\|A0A072VGE0_MEDTR	96.212	132	5	0	1	132	248	379	2.31e-87	268

TFs/TRs:

Gene ID	Type	Classification
MsaG007720	TR	mTERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000180	MsaG007720	0.817368	5.949673e-52	1.221788e-49
MsaG000405	MsaG007720	0.821999	5.272117e-53	1.222595e-50
MsaG001366	MsaG007720	0.809771	2.742225e-50	4.657130e-48
MsaG004105	MsaG007720	0.806525	1.336820e-49	2.100547e-47
MsaG004793	MsaG007720	0.807121	1.001895e-49	1.596524e-47
MsaG005329	MsaG007720	0.815839	1.304239e-51	2.575388e-49
MsaG005774	MsaG007720	0.812634	6.608050e-51	1.203791e-48
MsaG007353	MsaG007720	0.830036	6.618076e-55	1.917333e-52
MsaG007568	MsaG007720	0.807552	8.125807e-50	1.308198e-47
MsaG007720	MsaG008220	0.804115	4.252643e-49	6.316477e-47
MsaG007720	MsaG008324	0.826692	4.202845e-54	1.108029e-51
MsaG007720	MsaG010816	0.810802	1.646662e-50	2.867620e-48
MsaG007720	MsaG011080	0.804976	2.817378e-49	4.268973e-47
MsaG007720	MsaG012287	0.831306	3.244177e-55	9.747081e-53
MsaG007720	MsaG016567	0.808023	6.459328e-50	1.051773e-47
MsaG007720	MsaG017170	0.814250	2.926655e-51	5.551829e-49
MsaG007720	MsaG018134	0.800776	2.057710e-48	2.831409e-46
MsaG007720	MsaG018909	0.804452	3.620127e-49	5.418999e-47
MsaG007720	MsaG020078	0.818283	3.706374e-52	7.792547e-50
MsaG007720	MsaG020787	0.808901	4.203934e-50	6.991478e-48
MsaG007720	MsaG021026	0.811193	1.356591e-50	2.385117e-48
MsaG007720	MsaG021471	0.804634	3.319305e-49	4.989593e-47
MsaG007720	MsaG021485	0.822107	4.976185e-53	1.157327e-50
MsaG007720	MsaG023761	0.802390	9.641130e-49	1.376127e-46
MsaG007720	MsaG023762	0.803199	6.572578e-49	9.557424e-47
MsaG007720	MsaG025287	0.808833	4.346936e-50	7.217463e-48
MsaG007720	MsaG027340	0.803792	4.960456e-49	7.312551e-47
MsaG007720	MsaG028698	0.802745	8.149485e-49	1.172686e-46
MsaG007720	MsaG028804	0.802608	8.695429e-49	1.247364e-46
MsaG007720	MsaG029232	0.806903	1.113537e-49	1.765284e-47
MsaG007720	MsaG029482	0.808903	4.201280e-50	6.987275e-48
MsaG007720	MsaG029487	0.817119	6.764959e-52	1.380349e-49
MsaG007720	MsaG032046	0.800524	2.315682e-48	3.168170e-46
MsaG007720	MsaG032786	0.801381	1.550126e-48	2.162255e-46
MsaG007720	MsaG034207	0.833046	1.210207e-55	3.825405e-53
MsaG007720	MsaG035463	0.829435	9.253854e-55	2.635136e-52
MsaG007720	MsaG035675	0.809943	2.518568e-50	4.295030e-48
MsaG007720	MsaG036241	0.820394	1.230616e-52	2.735007e-50
MsaG007720	MsaG036420	0.860770	3.225748e-63	2.583047e-60
MsaG007720	MsaG042510	0.807771	7.304743e-50	1.182214e-47
MsaG007720	MsaG042898	0.800180	2.718639e-48	3.690593e-46
MsaG007720	MsaG002433	0.800257	2.622446e-48	3.566304e-46
MsaG007720	MsaG008955	0.808311	5.611675e-50	9.200680e-48
MsaG007720	MsaG011633	0.802805	7.921508e-49	1.141445e-46
MsaG007720	MsaG019592	0.816467	9.460041e-52	1.898039e-49
MsaG007720	MsaG026536	0.805958	1.757963e-49	2.725382e-47
MsaG007720	MsaG032663	0.832192	1.966195e-55	6.062324e-53
MsaG007720	MsaG034613	0.817275	6.243269e-52	1.279043e-49
MsaG007720	MsaG033153	0.809208	3.617360e-50	6.060135e-48
MsaG007720	MsaG033504	0.811452	1.192248e-50	2.109574e-48
MsaG007720	MsaG034183	0.809301	3.455435e-50	5.801806e-48
MsaG007720	MsaG036665	0.809888	2.587674e-50	4.407110e-48
MsaG007720	MsaG036543	0.822460	4.125430e-53	9.685990e-51
MsaG007720	MsaG042833	0.800439	2.408407e-48	3.288849e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007720	MtrunA17_Chr2g0295761	96.212	132	5	0	1	132	261	392	7.23e-91	268
MsaG007720	MtrunA17_Chr2g0296251	62.016	129	49	0	1	129	270	398	8.30e-50	163
MsaG007720	MtrunA17_Chr2g0296131	56.818	132	57	0	1	132	34	165	1.53e-49	156
MsaG007720	MtrunA17_Chr2g0296231	61.538	130	48	1	1	130	254	381	5.62e-49	160
MsaG007720	MtrunA17_Chr2g0296701	61.538	130	50	0	1	130	28	157	1.79e-48	153
MsaG007720	MtrunA17_Chr2g0296551	58.462	130	54	0	1	130	56	185	2.81e-48	153
MsaG007720	MtrunA17_Chr2g0296221	58.462	130	54	0	1	130	286	415	9.50e-48	159
MsaG007720	MtrunA17_Chr2g0296291	59.690	129	52	0	1	129	270	398	6.60e-47	156
MsaG007720	MtrunA17_Chr2g0296751	58.462	130	54	0	1	130	1	130	1.18e-46	148
MsaG007720	MtrunA17_Chr4g0067121	52.273	132	63	0	1	132	252	383	1.13e-45	152
MsaG007720	MtrunA17_Chr2g0296191	57.812	128	54	0	1	128	382	509	2.69e-45	157
MsaG007720	MtrunA17_Chr2g0296191	57.143	126	54	0	1	126	869	994	2.06e-44	154
MsaG007720	MtrunA17_Chr2g0296721	57.692	130	55	0	1	130	254	383	3.38e-45	151
MsaG007720	MtrunA17_Chr2g0296211	58.915	129	53	0	2	130	231	359	7.03e-45	150
MsaG007720	MtrunA17_Chr2g0296301	53.846	130	60	0	1	130	238	367	8.02e-45	150
MsaG007720	MtrunA17_Chr2g0296161	50.758	132	65	0	1	132	30	161	1.36e-44	143
MsaG007720	MtrunA17_Chr2g0295741	54.545	132	60	0	1	132	248	379	2.39e-44	149
MsaG007720	MtrunA17_Chr2g0296741	57.600	125	53	0	6	130	280	404	2.49e-44	149
MsaG007720	MtrunA17_Chr2g0286191	56.250	128	55	1	2	129	233	359	4.52e-44	147
MsaG007720	MtrunA17_Chr2g0296171	57.364	129	55	0	1	129	267	395	5.36e-44	148
MsaG007720	MtrunA17_Chr2g0296711	58.140	129	54	0	1	129	258	386	1.33e-43	147
MsaG007720	MtrunA17_Chr2g0315731	55.385	130	58	0	1	130	275	404	1.37e-43	147
MsaG007720	MtrunA17_Chr2g0296121	50.000	132	66	0	1	132	328	459	3.11e-43	147
MsaG007720	MtrunA17_Chr2g0295731	51.515	132	64	0	1	132	249	380	5.63e-43	145
MsaG007720	MtrunA17_Chr2g0296151	52.672	131	62	0	2	132	243	373	1.16e-42	144
MsaG007720	MtrunA17_Chr2g0296111	54.615	130	58	1	3	132	245	373	2.26e-42	143
MsaG007720	MtrunA17_Chr2g0286221	50.394	127	62	1	6	132	47	172	2.32e-37	125
MsaG007720	MtrunA17_Chr4g0067141	46.825	126	67	0	1	126	244	369	5.66e-35	124
MsaG007720	MtrunA17_Chr4g0067671	48.673	113	58	0	1	113	244	356	4.52e-34	121
MsaG007720	MtrunA17_Chr2g0295721	57.143	84	36	0	1	84	30	113	2.26e-28	100
MsaG007720	MtrunA17_Chr2g0296181	46.512	129	43	1	2	130	256	358	2.78e-26	101
MsaG007720	MtrunA17_Chr4g0067131	50.617	81	40	0	45	125	1	81	7.78e-25	90.5
MsaG007720	MtrunA17_Chr4g0001831	34.127	126	83	0	1	126	242	367	2.57e-19	82.0
MsaG007720	MtrunA17_Chr4g0067681	46.774	62	33	0	34	95	1	62	5.71e-17	70.1
MsaG007720	MtrunA17_Chr8g0377781	30.894	123	85	0	1	123	246	368	7.75e-13	63.9
MsaG007720	MtrunA17_Chr8g0377801	26.984	126	92	0	1	126	259	384	1.04e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007720	AT5G07900.1	40.476	126	75	0	2	127	275	400	6.23e-27	103
MsaG007720	AT1G21150.3	33.333	126	83	1	2	126	225	350	7.96e-17	75.5
MsaG007720	AT1G21150.1	33.333	126	83	1	2	126	261	386	1.00e-16	75.5
MsaG007720	AT1G21150.2	33.333	126	83	1	2	126	325	450	1.07e-16	75.5
MsaG007720	AT1G61990.2	33.051	118	76	1	12	126	291	408	5.55e-15	70.5
MsaG007720	AT1G61990.1	33.051	118	76	1	12	126	291	408	5.55e-15	70.5
MsaG007720	AT1G61970.2	34.314	102	66	1	12	112	298	399	1.40e-13	66.6
MsaG007720	AT1G61970.7	34.314	102	66	1	12	112	298	399	1.40e-13	66.6
MsaG007720	AT1G61970.6	34.314	102	66	1	12	112	298	399	1.40e-13	66.6
MsaG007720	AT1G61970.3	34.314	102	66	1	12	112	298	399	1.40e-13	66.6
MsaG007720	AT1G61970.5	34.314	102	66	1	12	112	298	399	1.40e-13	66.6
MsaG007720	AT1G61970.4	34.314	102	66	1	12	112	298	399	1.40e-13	66.6
MsaG007720	AT1G61970.1	34.314	102	66	1	12	112	298	399	1.40e-13	66.6
MsaG007720	AT1G62010.1	34.314	102	66	1	12	112	282	383	1.60e-13	66.2
MsaG007720	AT1G61960.1	30.081	123	83	1	12	131	334	456	1.85e-13	66.2
MsaG007720	AT1G62120.1	33.628	113	74	1	2	113	294	406	6.82e-13	64.7
MsaG007720	AT1G61980.3	33.051	118	76	2	12	126	298	415	1.86e-12	63.2
MsaG007720	AT1G61980.2	33.051	118	76	2	12	126	298	415	1.86e-12	63.2
MsaG007720	AT1G61980.1	33.051	118	76	2	12	126	298	415	1.86e-12	63.2
MsaG007720	AT5G64950.1	32.824	131	83	2	1	126	245	375	8.49e-12	61.2
MsaG007720	AT1G62085.1	32.039	103	69	1	12	113	338	440	7.55e-11	58.9
MsaG007720	AT1G62085.2	32.039	103	69	1	12	113	338	440	7.55e-11	58.9

Find 27 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTAATAAGGTGATGAGATTT+TGG	0.153456	2:-22151331	MsaT007720.1:CDS
TTTCGTATAGTTTGGAGAAT+AGG	0.328948	2:-22151256	MsaT007720.1:CDS
ATTGAATTGTCTACTCCATT+TGG	0.352685	2:-22151173	MsaT007720.1:CDS
TTCGTATAGTTTGGAGAATA+GGG	0.359509	2:-22151255	MsaT007720.1:CDS
AAGTTGTTGTCTTTAAGAAA+TGG	0.363837	2:-22151427	MsaT007720.1:CDS
ATCCACGGAGAAAATTAATA+AGG	0.367860	2:-22151345	MsaT007720.1:CDS
TTGGGTCAATGAGTTGGGTT+GGG	0.371128	2:-22151312	MsaT007720.1:CDS
AGTTGTTGTCTTTAAGAAAT+GGG	0.373623	2:-22151426	MsaT007720.1:CDS
AAATGGTTCTTGAAGCGTTT+AGG	0.395855	2:-22151391	MsaT007720.1:CDS
TGAGTTGGGTTGGGACTCTT+CGG	0.410843	2:-22151303	MsaT007720.1:CDS
ACTCTTCGGCTCTTGTCAAA+AGG	0.469912	2:-22151289	MsaT007720.1:CDS
TTCTTGAAGCGTTTAGGAAG+CGG	0.487125	2:-22151385	MsaT007720.1:CDS
TTTGGGTCAATGAGTTGGGT+TGG	0.489140	2:-22151313	MsaT007720.1:CDS
GGCCATGTCGAAATCACGTT+GGG	0.495859	2:-22151456	None:intergenic
ATGGGGTTGGTCTGATGAAA+TGG	0.499033	2:-22151408	MsaT007720.1:CDS
GTTGTTGTCTTTAAGAAATG+GGG	0.513781	2:-22151425	MsaT007720.1:CDS
TGCGAAACAACACAAGCCCT+TGG	0.528307	2:+22151227	None:intergenic
TTCGGCTCTTGTCAAAAGGC+CGG	0.528513	2:-22151285	MsaT007720.1:CDS
TGGAGAATAGGGTCATTCCA+AGG	0.540810	2:-22151244	MsaT007720.1:CDS
TTGTCTTTAAGAAATGGGGT+TGG	0.562623	2:-22151421	MsaT007720.1:CDS
ATTGTGTATGTTAGCATCCA+CGG	0.574891	2:-22151360	MsaT007720.1:CDS
GGAGAATAGGGTCATTCCAA+GGG	0.578298	2:-22151243	MsaT007720.1:CDS
GGCTCTTGTCAAAAGGCCGG+AGG	0.586864	2:-22151282	MsaT007720.1:CDS
GTTTCGCATTTGATCTCCAG+AGG	0.592319	2:-22151212	MsaT007720.1:CDS
GGGCCATGTCGAAATCACGT+TGG	0.650039	2:-22151457	None:intergenic
ATCCCAACGTGATTTCGACA+TGG	0.666340	2:+22151454	None:intergenic
GTGGATGCTAACATACACAA+TGG	0.700210	2:+22151362	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	22151076	22151474	22151076	ID=MsaG007720
Chr2	mRNA	22151076	22151474	22151076	ID=MsaT007720.1;Parent=MsaG007720
Chr2	exon	22151076	22151474	22151076	ID=MsaT007720.1.exon1;Parent=MsaT007720.1
Chr2	CDS	22151076	22151474	22151076	ID=cds.MsaT007720.1;Parent=MsaT007720.1

Gene Sequence

>MsaT007720.1

ATGTCGAAATCACGTTGGGATGCGAAAGTTGTTGTCTTTAAGAAATGGGGTTGGTCTGATGAAATGGTTCTTGAAGCGTTTAGGAAGCGGCCATTGTGTATGTTAGCATCCACGGAGAAAATTAATAAGGTGATGAGATTTTGGGTCAATGAGTTGGGTTGGGACTCTTCGGCTCTTGTCAAAAGGCCGGAGGTTTTTTCGTATAGTTTGGAGAATAGGGTCATTCCAAGGGCTTGTGTTGTTTCGCATTTGATCTCCAGAGGTTTGATAGAAAAGAATATTGAATTGTCTACTCCATTTGGTGTTAATGAAAATGTGTTTCTTGAAAAGTATGTGCAGTGTTTTAAGGAGGAAAGAGATGATTTGTTAAAGCTATACCTAGAAAAAATGGGTGTCTGA

Protein sequence

>MsaT007720.1

MSKSRWDAKVVVFKKWGWSDEMVLEAFRKRPLCMLASTEKINKVMRFWVNELGWDSSALVKRPEVFSYSLENRVIPRACVVSHLISRGLIEKNIELSTPFGVNENVFLEKYVQCFKEERDDLLKLYLEKMGV*