AlfalfaGEDB | MsaG007747

M. sativa ssp. caerulea / MsaG007747

KEGG: K04681
GO: GO:0000003 GO:0000082 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0001558 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006275 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008356 GO:0009553 GO:0009555 GO:0009566 GO:0009567 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010026 GO:0010052 GO:0010090 GO:0010103 GO:0010374 GO:0010377 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022619 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0033043 GO:0034641 GO:0040008 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044843 GO:0045132 GO:0045143 GO:0045165 GO:0046483 GO:0048229 GO:0048285 GO:0048366 GO:0048367 GO:0048468 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051239 GO:0051276 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0051783 GO:0055046 GO:0060255 GO:0061982 GO:0065007 GO:0070192 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0098813 GO:0099402 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1903047 GO:1903866 GO:2000036 GO:2000112 GO:2000653
PFAM: PF01858.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007747	GAU16807.1	58.491	106	44	0	390	495	218	323	9.50e-28	125
MsaG007747	GAU16807.1	86.916	214	25	2	1	213	110	321	5.95e-123	374

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007747	sp\|A9UL14\|RBR_MEDSA	56.522	207	88	1	98	302	735	941	1.88e-64	229
MsaG007747	sp\|A9UL14\|RBR_MEDSA	59.859	142	57	0	389	530	744	885	1.30e-49	187
MsaG007747	sp\|A9UL14\|RBR_MEDSA	57.895	95	37	2	1	95	555	646	1.67e-23	108

Showing 1 to 3 of 3 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007747	tr\|A0A392M220\|A0A392M220_9FABA	53.378	148	66	2	108	252	64	211	5.12e-38	149
MsaG007747	tr\|A0A392M220\|A0A392M220_9FABA	53.409	88	41	0	236	323	2	89	3.66e-15	85.9
MsaG007747	tr\|A0A392M220\|A0A392M220_9FABA	82.587	201	35	0	327	527	1	201	1.98e-114	347

Showing 1 to 3 of 3 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG007747	TR	RB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007747	MtrunA17_Chr8g0353751	55.556	207	90	1	98	302	735	941	4.93e-64	225
MsaG007747	MtrunA17_Chr8g0353751	61.268	142	55	0	389	530	744	885	2.57e-51	189
MsaG007747	MtrunA17_Chr8g0353751	58.947	95	36	2	1	95	555	646	1.35e-25	111

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007747	AT3G12280.2	48.077	208	93	4	98	302	726	921	2.87e-49	183
MsaG007747	AT3G12280.2	56.716	134	54	2	389	522	735	864	1.35e-39	154
MsaG007747	AT3G12280.2	65.169	89	28	2	1	89	547	632	1.94e-25	111
MsaG007747	AT3G12280.1	48.077	208	93	4	98	302	726	921	2.88e-49	183
MsaG007747	AT3G12280.1	56.716	134	54	2	389	522	735	864	1.35e-39	154
MsaG007747	AT3G12280.1	65.169	89	28	2	1	89	547	632	1.94e-25	111

Showing 1 to 6 of 6 entries

Previous1Next

Find 122 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACGTGGGTTGCACCG+TGG	0.697661	2:+22484206	None:intergenic
AAAACGGGTGACCTGCACTC+TGG	0.568545	2:+22488570	None:intergenic
AAAACTGAACCTGAGTTTCT+GGG	0.413033	2:-22488619	MsaT007747.1:CDS
AAAAGCAGTGGCTCTACAGA+GGG	0.599947	2:+22484074	None:intergenic
AAAGGCTACAATTATCCCAA+AGG	0.645341	2:-22488842	MsaT007747.1:CDS
AAGAGCATGGTTGAAATGCT+AGG	0.508698	2:-22485386	MsaT007747.1:CDS
AAGATTTCCTGTTATGCATT+GGG	0.406154	2:-22488198	MsaT007747.1:CDS
AAGCCTTCCTGTTATGTCTG+TGG	0.553212	2:-22487230	MsaT007747.1:CDS
AATCAACAACTTCAGCTAAT+TGG	0.265538	2:+22488385	None:intergenic
AATGCATAACAGGAAATCTT+GGG	0.514779	2:+22488201	None:intergenic

Showing 1 to 10 of 122 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	22484034	22489626	22484034	ID=MsaG007747
Chr2	mRNA	22484034	22489626	22484034	ID=MsaT007747.1;Parent=MsaG007747
Chr2	exon	22484034	22484282	22484034	ID=MsaT007747.1.exon9;Parent=MsaT007747.1
Chr2	CDS	22484034	22484282	22484034	ID=cds.MsaT007747.1;Parent=MsaT007747.1
Chr2	exon	22485259	22485435	22485259	ID=MsaT007747.1.exon8;Parent=MsaT007747.1
Chr2	CDS	22485259	22485435	22485259	ID=cds.MsaT007747.1;Parent=MsaT007747.1
Chr2	exon	22487177	22487298	22487177	ID=MsaT007747.1.exon7;Parent=MsaT007747.1
Chr2	CDS	22487177	22487298	22487177	ID=cds.MsaT007747.1;Parent=MsaT007747.1
Chr2	exon	22487400	22487478	22487400	ID=MsaT007747.1.exon6;Parent=MsaT007747.1
Chr2	CDS	22487400	22487478	22487400	ID=cds.MsaT007747.1;Parent=MsaT007747.1
Chr2	exon	22487870	22487944	22487870	ID=MsaT007747.1.exon5;Parent=MsaT007747.1
Chr2	CDS	22487870	22487944	22487870	ID=cds.MsaT007747.1;Parent=MsaT007747.1
Chr2	exon	22488145	22488266	22488145	ID=MsaT007747.1.exon4;Parent=MsaT007747.1
Chr2	CDS	22488145	22488266	22488145	ID=cds.MsaT007747.1;Parent=MsaT007747.1
Chr2	exon	22488376	22488646	22488376	ID=MsaT007747.1.exon3;Parent=MsaT007747.1
Chr2	CDS	22488376	22488646	22488376	ID=cds.MsaT007747.1;Parent=MsaT007747.1
Chr2	exon	22488728	22488904	22488728	ID=MsaT007747.1.exon2;Parent=MsaT007747.1
Chr2	CDS	22488728	22488904	22488728	ID=cds.MsaT007747.1;Parent=MsaT007747.1
Chr2	exon	22489303	22489626	22489303	ID=MsaT007747.1.exon1;Parent=MsaT007747.1
Chr2	CDS	22489303	22489626	22489303	ID=cds.MsaT007747.1;Parent=MsaT007747.1

Gene Sequence

>MsaT007747.1

ATGTTCCCTGCTGATGATGTATTGGAGAGCTCTGGAATTACAGCTTTTGATCTTAGTCATACCATCACCACAAGTTTCATTACACATGAAGACTCTTTCCCAGGATACTTCAGTCGACTTCTCAATTCATTCAAAGAACAACTTTTGGAGAGCATGGCATGGAAAAAGGGTTCCTCATTGTATAACTCTTTGTCACTTGCTAGACCGTCCCTTTCAGAGGAAATCAACCGTCTTGGACTGTTTGCTCAACCAATGCCATCATTCAATGAAACTATTCTCGACCTGGAGGCAGCAGAAACTATGATTGACCTATTTTTCCGTGAGATCAGTATGTTGGGAGCGGTCAGAATACGCGGCATGGCTGAAAGGCTACAATTATCCCAAAGGACAAGGGAGGACGTATACAGTCTTTTTCAGCGAATCCTAAACCAGCGGACACACCTCTTCTTCAATCGTCATATTGACCAAATCATGTTGTGTTGCTTCTATGTAGTCGCACAGTTTTCAAAACTGAACCTGAGTTTCTGGGAGATTGTACACAGCTACAAACAGCAACCAGAGTGCAGGTCACCCGTTTTTCGCAGTGTATTTGTTGATTGCCCATTGGCGGGCGCGGGCCATAATGATGATAAGCCACAGAAGCGTGTTGGAATTATTACATTTTACAATGACATATTCGCTCCATCTGTATGGCCACTGGTGATGGAACTTATCACTGATGAAGAAACTGTGAAAAGTGACCAATTAGCTGAAGTTGTTGATTCAAAGGATGGCCATCTAGCTCAATGTCTTGTGTCTCCAAAAATAGTACCTTTCCCAAGATTTCCTGTTATGCATTGGGAAAAACGATACCCCACAAAAAACTTACGCGTCTCTCCATTTTCATCATCTGAGATCATTATGTTGGGAGCAGTCAGAATAAATGGCATGGTTGAAAAGCTACAACTATCTCAGCAGACAGGAGAGAATCCGCTGCTGTCGGAACTTTACACTGTTGTGACACCTGGGAGGAGTTACAAAATAGCTGAATTCATTAACAAAGCCGATGGCCATCTAGCTCAATGTCCTGAGCCTCCTGAAATATTAACTTTCCCAAGCCTTCCTGTTATGTCTGTGGAAGAAAAGTCTGCCGCACACTATGCATGTGTCTCTCCAATAGGATCATCTGAGATCATTATGTTGGGTGCAATCAGAATCAAGAGCATGGTTGAAATGCTAGGGTTATCTCAGGAGATAAGGGAGAATGTATACGGTCTGTTCCAGAGAATCCTACATCATCAGACATCTCTCTTCTTCAACCGTCATATTGACCACATCATTGTGTGTTGCTTCTATGCAGTCACAAAGATTTCAAAACCGAGCCTGAGTTTTAAGGAGATTATAGGCAGCTATAAGAAGCAACCACGGTGCAACCCACGTGTTTTTGATAGCGTATTTGTTGATTGGTCATTGGCATGCCAGGACCCAGAATCTAGTAAAATAATAGGGCATGAGAATGTCGACATTGTTACATTCTGCAATGATATATTTGTTCCCTCTGTAGAGCCACTGCTTTTGGAACTTGGCGCTGAAGGGGAAGCTGTGAAAAGTTGCTGA

Protein sequence

>MsaT007747.1

MFPADDVLESSGITAFDLSHTITTSFITHEDSFPGYFSRLLNSFKEQLLESMAWKKGSSLYNSLSLARPSLSEEINRLGLFAQPMPSFNETILDLEAAETMIDLFFREISMLGAVRIRGMAERLQLSQRTREDVYSLFQRILNQRTHLFFNRHIDQIMLCCFYVVAQFSKLNLSFWEIVHSYKQQPECRSPVFRSVFVDCPLAGAGHNDDKPQKRVGIITFYNDIFAPSVWPLVMELITDEETVKSDQLAEVVDSKDGHLAQCLVSPKIVPFPRFPVMHWEKRYPTKNLRVSPFSSSEIIMLGAVRINGMVEKLQLSQQTGENPLLSELYTVVTPGRSYKIAEFINKADGHLAQCPEPPEILTFPSLPVMSVEEKSAAHYACVSPIGSSEIIMLGAIRIKSMVEMLGLSQEIRENVYGLFQRILHHQTSLFFNRHIDHIIVCCFYAVTKISKPSLSFKEIIGSYKKQPRCNPRVFDSVFVDWSLACQDPESSKIIGHENVDIVTFCNDIFVPSVEPLLLELGAEGEAVKSC*