Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007747 | GAU16807.1 | 58.491 | 106 | 44 | 0 | 390 | 495 | 218 | 323 | 9.50e-28 | 125 |
MsaG007747 | GAU16807.1 | 86.916 | 214 | 25 | 2 | 1 | 213 | 110 | 321 | 5.95e-123 | 374 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007747 | sp|A9UL14|RBR_MEDSA | 56.522 | 207 | 88 | 1 | 98 | 302 | 735 | 941 | 1.88e-64 | 229 |
MsaG007747 | sp|A9UL14|RBR_MEDSA | 59.859 | 142 | 57 | 0 | 389 | 530 | 744 | 885 | 1.30e-49 | 187 |
MsaG007747 | sp|A9UL14|RBR_MEDSA | 57.895 | 95 | 37 | 2 | 1 | 95 | 555 | 646 | 1.67e-23 | 108 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007747 | tr|A0A392M220|A0A392M220_9FABA | 53.378 | 148 | 66 | 2 | 108 | 252 | 64 | 211 | 5.12e-38 | 149 |
MsaG007747 | tr|A0A392M220|A0A392M220_9FABA | 53.409 | 88 | 41 | 0 | 236 | 323 | 2 | 89 | 3.66e-15 | 85.9 |
MsaG007747 | tr|A0A392M220|A0A392M220_9FABA | 82.587 | 201 | 35 | 0 | 327 | 527 | 1 | 201 | 1.98e-114 | 347 |
Gene ID | Type | Classification |
---|---|---|
MsaG007747 | TR | RB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007747 | MtrunA17_Chr8g0353751 | 55.556 | 207 | 90 | 1 | 98 | 302 | 735 | 941 | 4.93e-64 | 225 |
MsaG007747 | MtrunA17_Chr8g0353751 | 61.268 | 142 | 55 | 0 | 389 | 530 | 744 | 885 | 2.57e-51 | 189 |
MsaG007747 | MtrunA17_Chr8g0353751 | 58.947 | 95 | 36 | 2 | 1 | 95 | 555 | 646 | 1.35e-25 | 111 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007747 | AT3G12280.2 | 48.077 | 208 | 93 | 4 | 98 | 302 | 726 | 921 | 2.87e-49 | 183 |
MsaG007747 | AT3G12280.2 | 56.716 | 134 | 54 | 2 | 389 | 522 | 735 | 864 | 1.35e-39 | 154 |
MsaG007747 | AT3G12280.2 | 65.169 | 89 | 28 | 2 | 1 | 89 | 547 | 632 | 1.94e-25 | 111 |
MsaG007747 | AT3G12280.1 | 48.077 | 208 | 93 | 4 | 98 | 302 | 726 | 921 | 2.88e-49 | 183 |
MsaG007747 | AT3G12280.1 | 56.716 | 134 | 54 | 2 | 389 | 522 | 735 | 864 | 1.35e-39 | 154 |
MsaG007747 | AT3G12280.1 | 65.169 | 89 | 28 | 2 | 1 | 89 | 547 | 632 | 1.94e-25 | 111 |
Find 122 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAACTGAACCTGAGTTTC+TGG | 0.137982 | 2:-22488620 | MsaT007747.1:CDS |
CTTGGGAAAGTTAATATTTC+AGG | 0.148410 | 2:+22487250 | None:intergenic |
CTCTGTAGAGCCACTGCTTT+TGG | 0.167941 | 2:-22484072 | MsaT007747.1:CDS |
CCAGAATCTAGTAAAATAAT+AGG | 0.219822 | 2:-22484143 | MsaT007747.1:CDS |
GGAGAGCATGGCATGGAAAA+AGG | 0.224771 | 2:-22489458 | MsaT007747.1:CDS |
TTCATTCAAAGAACAACTTT+TGG | 0.245558 | 2:-22489479 | MsaT007747.1:CDS |
AATCAACAACTTCAGCTAAT+TGG | 0.265538 | 2:+22488385 | None:intergenic |
AGAGGTGTGTCCGCTGGTTT+AGG | 0.315056 | 2:+22488784 | None:intergenic |
TTGGGAGCAGTCAGAATAAA+TGG | 0.315321 | 2:-22487913 | MsaT007747.1:CDS |
ATACGTCCTCCCTTGTCCTT+TGG | 0.323788 | 2:+22488826 | None:intergenic |
TACGTCCTCCCTTGTCCTTT+GGG | 0.358218 | 2:+22488827 | None:intergenic |
AGTACCTCAGATGATGAAAA+TGG | 0.376291 | 2:+22488140 | None:intergenic |
TCTGATGATGTAGGATTCTC+TGG | 0.386395 | 2:+22485324 | None:intergenic |
CGTATTTGTTGATTGGTCAT+TGG | 0.390654 | 2:-22484177 | MsaT007747.1:CDS |
TTGATAGCGTATTTGTTGAT+TGG | 0.394006 | 2:-22484184 | MsaT007747.1:CDS |
AGAAGCAACACAACATGATT+TGG | 0.399003 | 2:+22488742 | None:intergenic |
AAGATTTCCTGTTATGCATT+GGG | 0.406154 | 2:-22488198 | MsaT007747.1:CDS |
AAAACTGAACCTGAGTTTCT+GGG | 0.413033 | 2:-22488619 | MsaT007747.1:CDS |
CAATGCATAACAGGAAATCT+TGG | 0.415525 | 2:+22488200 | None:intergenic |
TCTGTGGCTTATCATCATTA+TGG | 0.417278 | 2:+22488508 | None:intergenic |
TGTTTCTCAGATCAGTATGT+TGG | 0.421499 | 2:-22488892 | MsaT007747.1:intron |
TATGGCCCGCGCCCGCCAAT+GGG | 0.433969 | 2:+22488526 | None:intergenic |
TGTCTCCTAGATCATTATGT+TGG | 0.439372 | 2:-22485423 | MsaT007747.1:intron |
TATGCATGTGTCTCTCCAAT+AGG | 0.440195 | 2:-22487187 | MsaT007747.1:CDS |
CAAGATTTCCTGTTATGCAT+TGG | 0.442326 | 2:-22488199 | MsaT007747.1:CDS |
AGAAGTCGACTGAAGTATCC+TGG | 0.442610 | 2:+22489505 | None:intergenic |
GCTCAGGACATTGAGCTAGA+TGG | 0.442938 | 2:+22487275 | None:intergenic |
CTTTACACTGTTGTGACACC+TGG | 0.443475 | 2:-22487441 | MsaT007747.1:CDS |
GTTAATATTTCAGGAGGCTC+AGG | 0.444282 | 2:+22487259 | None:intergenic |
CAGAATCTAGTAAAATAATA+GGG | 0.447373 | 2:-22484142 | MsaT007747.1:CDS |
GATTGCCCATTGGCGGGCGC+GGG | 0.447736 | 2:-22488531 | MsaT007747.1:CDS |
GTTTCTCAGATCAGTATGTT+GGG | 0.449448 | 2:-22488891 | MsaT007747.1:intron |
TGATTGCCCATTGGCGGGCG+CGG | 0.456069 | 2:-22488532 | MsaT007747.1:CDS |
ATCTGTATGGCCACTGGTGA+TGG | 0.459470 | 2:-22488442 | MsaT007747.1:CDS |
AGCTGAAGTTGTTGATTCAA+AGG | 0.461689 | 2:-22488379 | MsaT007747.1:CDS |
CTCTCCAATACATCATCAGC+AGG | 0.462992 | 2:+22489598 | None:intergenic |
ACACAAGACATTGAGCTAGA+TGG | 0.464043 | 2:+22488243 | None:intergenic |
AGTACCTCAGATGATCCTAT+TGG | 0.469550 | 2:+22487172 | None:intergenic |
TGTTTCCTAGATCATTATGT+TGG | 0.470021 | 2:-22487932 | MsaT007747.1:intron |
GACGGTTGATTTCCTCTGAA+AGG | 0.471928 | 2:+22489395 | None:intergenic |
GTTTCCTAGATCATTATGTT+GGG | 0.473365 | 2:-22487931 | MsaT007747.1:intron |
GTCTCCTAGATCATTATGTT+GGG | 0.480218 | 2:-22485422 | MsaT007747.1:intron |
TAGGGTTATCTCAGGAGATA+AGG | 0.480996 | 2:-22485367 | MsaT007747.1:CDS |
TTATGGCCCGCGCCCGCCAA+TGG | 0.482127 | 2:+22488525 | None:intergenic |
TGATTGGTCATTGGCATGCC+AGG | 0.482497 | 2:-22484168 | MsaT007747.1:CDS |
CGCTCCATCTGTATGGCCAC+TGG | 0.485239 | 2:-22488448 | MsaT007747.1:CDS |
ACGGTTGATTTCCTCTGAAA+GGG | 0.485458 | 2:+22489396 | None:intergenic |
ACACATGAAGACTCTTTCCC+AGG | 0.486510 | 2:-22489523 | MsaT007747.1:CDS |
TTTGTTGATTGCCCATTGGC+GGG | 0.491247 | 2:-22488537 | MsaT007747.1:CDS |
TCATAGTTTCTGCTGCCTCC+AGG | 0.491389 | 2:+22489323 | None:intergenic |
AGAATAGTTTCATTGAATGA+TGG | 0.491623 | 2:+22489349 | None:intergenic |
ACATATTCGCTCCATCTGTA+TGG | 0.497154 | 2:-22488455 | MsaT007747.1:CDS |
AAGAGCATGGTTGAAATGCT+AGG | 0.508698 | 2:-22485386 | MsaT007747.1:CDS |
GTTCCCTGCTGATGATGTAT+TGG | 0.508997 | 2:-22489602 | MsaT007747.1:CDS |
AGAGAGATGTCTGATGATGT+AGG | 0.509767 | 2:+22485315 | None:intergenic |
GAGATAAGGGAGAATGTATA+CGG | 0.509906 | 2:-22485353 | MsaT007747.1:CDS |
TCAGAGGAAATCAACCGTCT+TGG | 0.513122 | 2:-22489391 | MsaT007747.1:CDS |
AATGCATAACAGGAAATCTT+GGG | 0.514779 | 2:+22488201 | None:intergenic |
GATGATGTATTGGAGAGCTC+TGG | 0.517279 | 2:-22489592 | MsaT007747.1:CDS |
GAAGTTGTTGATTCAAAGGA+TGG | 0.517332 | 2:-22488375 | MsaT007747.1:intron |
AGGGTTATCTCAGGAGATAA+GGG | 0.517484 | 2:-22485366 | MsaT007747.1:CDS |
TGAAGAAGAGGTGTGTCCGC+TGG | 0.517765 | 2:+22488778 | None:intergenic |
ATTTGTTGATTGCCCATTGG+CGG | 0.524796 | 2:-22488538 | MsaT007747.1:CDS |
CTATAATCTCCTTAAAACTC+AGG | 0.530245 | 2:+22484246 | None:intergenic |
TGAAATGCTAGGGTTATCTC+AGG | 0.532115 | 2:-22485375 | MsaT007747.1:CDS |
TACAATTATCCCAAAGGACA+AGG | 0.539877 | 2:-22488836 | MsaT007747.1:CDS |
TTGCTTCTATGTAGTCGCAC+AGG | 0.540096 | 2:-22488727 | MsaT007747.1:intron |
CAGACATAACAGGAAGGCTT+GGG | 0.541418 | 2:+22487233 | None:intergenic |
ATCACCAGTGGCCATACAGA+TGG | 0.542017 | 2:+22488444 | None:intergenic |
CAATATGACGATTGAAGAAG+AGG | 0.545947 | 2:+22488766 | None:intergenic |
ACAGACATAACAGGAAGGCT+TGG | 0.546125 | 2:+22487232 | None:intergenic |
ATCTCCTTAAAACTCAGGCT+CGG | 0.548102 | 2:+22484251 | None:intergenic |
CAAAAGCAGTGGCTCTACAG+AGG | 0.551471 | 2:+22484073 | None:intergenic |
AAGCCTTCCTGTTATGTCTG+TGG | 0.553212 | 2:-22487230 | MsaT007747.1:CDS |
AAAACGGGTGACCTGCACTC+TGG | 0.568545 | 2:+22488570 | None:intergenic |
TGTATTTGTTGATTGCCCAT+TGG | 0.569139 | 2:-22488541 | MsaT007747.1:CDS |
CTATGTAAAGCCGCTGCTGT+CGG | 0.569655 | 2:-22487466 | MsaT007747.1:intron |
TGCTAGACCGTCCCTTTCAG+AGG | 0.571805 | 2:-22489407 | MsaT007747.1:CDS |
ACAAACAGCAACCAGAGTGC+AGG | 0.572144 | 2:-22488581 | MsaT007747.1:CDS |
GTTTCATTGAATGATGGCAT+TGG | 0.572221 | 2:+22489355 | None:intergenic |
CAATGAAACTATTCTCGACC+TGG | 0.573458 | 2:-22489341 | MsaT007747.1:CDS |
TTTGGAACTTGGCGCTGAAG+GGG | 0.574775 | 2:-22484054 | MsaT007747.1:CDS |
TCAGATCAGTATGTTGGGAG+CGG | 0.579103 | 2:-22488886 | MsaT007747.1:intron |
ATAATTCCAACACGCTTCTG+TGG | 0.584901 | 2:+22488492 | None:intergenic |
GATAAGCCACAGAAGCGTGT+TGG | 0.585393 | 2:-22488498 | MsaT007747.1:CDS |
GGGAAAGTTAATATTTCAGG+AGG | 0.586410 | 2:+22487253 | None:intergenic |
GAATACGCGGCATGGCTGAA+AGG | 0.587007 | 2:-22488860 | MsaT007747.1:CDS |
AGAGCATGGTTGAAATGCTA+GGG | 0.588393 | 2:-22485385 | MsaT007747.1:CDS |
GTACAATCTCCCAGAAACTC+AGG | 0.592499 | 2:+22488610 | None:intergenic |
TGTAATGAAACTTGTGGTGA+TGG | 0.594107 | 2:+22489543 | None:intergenic |
CTACAACTATCTCAGCAGAC+AGG | 0.595751 | 2:-22487877 | MsaT007747.1:CDS |
AGCGGTCAGAATACGCGGCA+TGG | 0.598188 | 2:-22488868 | MsaT007747.1:CDS |
AAAAGCAGTGGCTCTACAGA+GGG | 0.599947 | 2:+22484074 | None:intergenic |
TTTACACTGTTGTGACACCT+GGG | 0.605280 | 2:-22487440 | MsaT007747.1:CDS |
TTGATTTCCTCTGAAAGGGA+CGG | 0.607373 | 2:+22489400 | None:intergenic |
TGCAATCAGAATCAAGAGCA+TGG | 0.611351 | 2:-22485399 | MsaT007747.1:CDS |
GAAGTCGACTGAAGTATCCT+GGG | 0.612687 | 2:+22489506 | None:intergenic |
ATAACAGGAAATCTTGGGAA+AGG | 0.622579 | 2:+22488206 | None:intergenic |
CTTCCACAGACATAACAGGA+AGG | 0.636074 | 2:+22487227 | None:intergenic |
TTGCTTCTATGCAGTCACAA+AGG | 0.637898 | 2:-22485258 | MsaT007747.1:intron |
AGCAGTCAGAATAAATGGCA+TGG | 0.640293 | 2:-22487908 | MsaT007747.1:CDS |
AAAGGCTACAATTATCCCAA+AGG | 0.645341 | 2:-22488842 | MsaT007747.1:CDS |
GCGCCAAGTTCCAAAAGCAG+TGG | 0.653587 | 2:+22484062 | None:intergenic |
GTTGAGCAAACAGTCCAAGA+CGG | 0.655365 | 2:+22489377 | None:intergenic |
GAATTCATTAACAAAGCCGA+TGG | 0.655551 | 2:-22487399 | MsaT007747.1:intron |
TGACAAAGAGTTATACAATG+AGG | 0.657399 | 2:+22489432 | None:intergenic |
CTCTCCAATAGGATCATCTG+AGG | 0.660685 | 2:-22487176 | MsaT007747.1:intron |
ACAATTATCCCAAAGGACAA+GGG | 0.662029 | 2:-22488835 | MsaT007747.1:CDS |
TTGGGAGCGGTCAGAATACG+CGG | 0.673382 | 2:-22488873 | MsaT007747.1:CDS |
GTGTAAAGTTCCGACAGCAG+CGG | 0.675258 | 2:+22487456 | None:intergenic |
TTCAGCGAATCCTAAACCAG+CGG | 0.676523 | 2:-22488794 | MsaT007747.1:CDS |
CAATGATGTGGTCAATATGA+CGG | 0.678181 | 2:+22485285 | None:intergenic |
AGAAGCAACACACAATGATG+TGG | 0.679428 | 2:+22485273 | None:intergenic |
GTGATAAGTTCCATCACCAG+TGG | 0.684233 | 2:+22488432 | None:intergenic |
TGAAACTATTCTCGACCTGG+AGG | 0.688326 | 2:-22489338 | MsaT007747.1:CDS |
AAAACACGTGGGTTGCACCG+TGG | 0.697661 | 2:+22484206 | None:intergenic |
AGAGACACATGCATAGTGTG+CGG | 0.699537 | 2:+22487195 | None:intergenic |
ACACTGTTGTGACACCTGGG+AGG | 0.709129 | 2:-22487437 | MsaT007747.1:CDS |
ATTATCCCAAAGGACAAGGG+AGG | 0.714855 | 2:-22488832 | MsaT007747.1:CDS |
TCTCCAATACATCATCAGCA+GGG | 0.719122 | 2:+22489599 | None:intergenic |
GCAGCTATAAGAAGCAACCA+CGG | 0.739982 | 2:-22484223 | MsaT007747.1:CDS |
TTCATGTGTAATGAAACTTG+TGG | 0.753409 | 2:+22489537 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 22484034 | 22489626 | 22484034 | ID=MsaG007747 |
Chr2 | mRNA | 22484034 | 22489626 | 22484034 | ID=MsaT007747.1;Parent=MsaG007747 |
Chr2 | exon | 22484034 | 22484282 | 22484034 | ID=MsaT007747.1.exon9;Parent=MsaT007747.1 |
Chr2 | CDS | 22484034 | 22484282 | 22484034 | ID=cds.MsaT007747.1;Parent=MsaT007747.1 |
Chr2 | exon | 22485259 | 22485435 | 22485259 | ID=MsaT007747.1.exon8;Parent=MsaT007747.1 |
Chr2 | CDS | 22485259 | 22485435 | 22485259 | ID=cds.MsaT007747.1;Parent=MsaT007747.1 |
Chr2 | exon | 22487177 | 22487298 | 22487177 | ID=MsaT007747.1.exon7;Parent=MsaT007747.1 |
Chr2 | CDS | 22487177 | 22487298 | 22487177 | ID=cds.MsaT007747.1;Parent=MsaT007747.1 |
Chr2 | exon | 22487400 | 22487478 | 22487400 | ID=MsaT007747.1.exon6;Parent=MsaT007747.1 |
Chr2 | CDS | 22487400 | 22487478 | 22487400 | ID=cds.MsaT007747.1;Parent=MsaT007747.1 |
Chr2 | exon | 22487870 | 22487944 | 22487870 | ID=MsaT007747.1.exon5;Parent=MsaT007747.1 |
Chr2 | CDS | 22487870 | 22487944 | 22487870 | ID=cds.MsaT007747.1;Parent=MsaT007747.1 |
Chr2 | exon | 22488145 | 22488266 | 22488145 | ID=MsaT007747.1.exon4;Parent=MsaT007747.1 |
Chr2 | CDS | 22488145 | 22488266 | 22488145 | ID=cds.MsaT007747.1;Parent=MsaT007747.1 |
Chr2 | exon | 22488376 | 22488646 | 22488376 | ID=MsaT007747.1.exon3;Parent=MsaT007747.1 |
Chr2 | CDS | 22488376 | 22488646 | 22488376 | ID=cds.MsaT007747.1;Parent=MsaT007747.1 |
Chr2 | exon | 22488728 | 22488904 | 22488728 | ID=MsaT007747.1.exon2;Parent=MsaT007747.1 |
Chr2 | CDS | 22488728 | 22488904 | 22488728 | ID=cds.MsaT007747.1;Parent=MsaT007747.1 |
Chr2 | exon | 22489303 | 22489626 | 22489303 | ID=MsaT007747.1.exon1;Parent=MsaT007747.1 |
Chr2 | CDS | 22489303 | 22489626 | 22489303 | ID=cds.MsaT007747.1;Parent=MsaT007747.1 |
Gene Sequence |
Protein sequence |