AlfalfaGEDB | MsaG007760

M. sativa ssp. caerulea / MsaG007760

KEGG: K15032
GO: -
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007760	XP_013463268.1	93.473	383	25	0	1	383	1	383	0.0	729

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007760	tr\|A0A072VGJ1\|A0A072VGJ1_MEDTR	93.473	383	25	0	1	383	1	383	0.0	729

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TFs/TRs:

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Gene ID	Type	Classification
MsaG007760	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007760	MtrunA17_Chr2g0296111	93.473	383	25	0	1	383	1	383	0.0	729
MsaG007760	MtrunA17_Chr2g0296151	66.234	385	118	4	5	382	3	382	0.0	509
MsaG007760	MtrunA17_Chr2g0295741	68.919	370	111	3	15	383	23	389	1.51e-177	499
MsaG007760	MtrunA17_Chr2g0296121	68.108	370	114	3	16	383	102	469	1.42e-172	489
MsaG007760	MtrunA17_Chr2g0295731	64.323	384	111	4	7	374	8	381	1.22e-171	484
MsaG007760	MtrunA17_Chr2g0296221	54.278	374	157	7	17	378	51	422	3.96e-126	370
MsaG007760	MtrunA17_Chr2g0296711	52.957	372	164	4	19	381	28	397	5.80e-126	369
MsaG007760	MtrunA17_Chr4g0067121	54.179	347	153	4	35	379	47	389	1.04e-124	365
MsaG007760	MtrunA17_Chr2g0296741	52.066	363	161	5	22	374	48	407	5.37e-123	362
MsaG007760	MtrunA17_Chr2g0296251	50.390	385	146	6	27	370	18	398	4.89e-122	358

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007760	AT5G07900.1	32.891	377	239	6	2	367	26	399	5.26e-61	202
MsaG007760	AT1G21150.3	30.968	310	207	3	30	335	10	316	2.93e-43	154
MsaG007760	AT1G21150.1	32.000	300	197	3	40	335	56	352	5.36e-43	154
MsaG007760	AT1G21150.2	32.000	300	197	3	40	335	120	416	1.58e-42	154
MsaG007760	AT1G61980.3	29.888	358	200	9	40	355	52	400	3.61e-31	123
MsaG007760	AT1G61980.2	29.888	358	200	9	40	355	52	400	3.61e-31	123
MsaG007760	AT1G61980.1	29.888	358	200	9	40	355	52	400	3.61e-31	123
MsaG007760	AT1G61970.2	28.090	356	199	10	41	351	53	396	4.23e-31	122
MsaG007760	AT1G61970.7	28.090	356	199	10	41	351	53	396	4.23e-31	122
MsaG007760	AT1G61970.6	28.090	356	199	10	41	351	53	396	4.23e-31	122

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Find 85 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCAAAGTTGTTGATG+AGG	0.632517	2:+22621233	None:intergenic
AAAAGGGTAATGAGTAATGT+TGG	0.457470	2:+22621308	None:intergenic
AAACTGCTGGTCCTTTGGCA+AGG	0.527369	2:+22620468	None:intergenic
AAAGAGGGTTAGGGTTTAGA+AGG	0.320241	2:+22621332	None:intergenic
AAAGTTTGGAAGCAGATTGT+GGG	0.488544	2:+22621209	None:intergenic
AACTGCTGGTCCTTTGGCAA+GGG	0.562420	2:+22620469	None:intergenic
AAGAAGGTGAGAACAGAGTC+AGG	0.478602	2:+22621148	None:intergenic
AAGAGGGTTAGGGTTTAGAA+GGG	0.536351	2:+22621333	None:intergenic
AAGTCGATGCCTTTAAGAAG+TGG	0.577016	2:-22620616	MsaT007760.1:CDS
AAGTTTGGAAGCAGATTGTG+GGG	0.614108	2:+22621210	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	22620238	22621389	22620238	ID=MsaG007760
Chr2	mRNA	22620238	22621389	22620238	ID=MsaT007760.1;Parent=MsaG007760
Chr2	exon	22620238	22621389	22620238	ID=MsaT007760.1.exon1;Parent=MsaT007760.1
Chr2	CDS	22620238	22621389	22620238	ID=cds.MsaT007760.1;Parent=MsaT007760.1

Gene Sequence

>MsaT007760.1

ATGTTTAACAATATATTATGGCGACACAGAACAACCCTTCTAAACCCTAACCCTCTTTTCCAACATTACTCATTACCCTTTTCTCTCCATTTCTGCACCAACACTTCAGATTCGACCTCTTTTGCAGTCTCCTACCTCATCAACAACTTTGGCTTTTCCCCACAATCTGCTTCCAAACTTTCCTCCACTTACAATGTTTGTTTCAAGAATGCCCAAAAACCTGACTCTGTTCTCACCTTCTTTAGAAACTATGGTTTCTCAGATTCCCAACTACGTCTTACCATTTCAAAGGAACCATGGCTACTTTCCTGCAACCCTTCTAAAAGGGTTTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTAACTCTGACATTGTTAACATTGTCACTAAGAACCCCAAGATCCTTAAAGCAAGCCTGAATAATAAAATTATCAAAGCCTATCAATTGATTTATAGATTCTTGCAATCAGACAAGGTCATTATTGATTGTGTTATTCGCAATCCATCTTTCTTTGGAGACGCTCGTGTGGTATCTAACATTATATTGCTGATTGCCAATGGAGTGGCCGACTCAAACATTAAAAGAATGCTTTGCGTAAGGAGTCAGGCATTTCAGACACCGACACATGACATGCTGAAATTGGTGGAGGAATTAAAGAATTTGGGTTTTACTCCTTCAAAATCAACCTTTGGTGTAGCGTTGCTAGCCAAACTATCTGTAAGAAAAACATTGTGGGGAGAGAAAGTCGATGCCTTTAAGAAGTGGGGTTGGTCTGATGAAGATGTTCTACAAGCATTTAGAAGGCAACCTCATTGTATGTTAACATCCATTGATAAAATTAATTTACTCATGAACTTTTGGGTCAATCAGTTGGGTTGGGATGCACTTGCCCTTGCCAAAGGACCAGCAGTTTTTTCTTTAAGTTTCGAAAAGAGGGTCCTTCCAAGGGCCTCTGTATTGCAATATCTTCTGAAGAAAGGTTTGCGAAACAAGAATGCAAGCTTAACTTGTCCATTTGTAGTGCCTGAGAAGCTGTTTCTTGATACATGTATAAAGGGTATTAAGGAGTCTTCTTATCTATTAAAGTTGTATGAGGAAAAACTCAATCTTGCTTACACCATGGACAAAACATGCACATCATGA

Protein sequence

>MsaT007760.1

MFNNILWRHRTTLLNPNPLFQHYSLPFSLHFCTNTSDSTSFAVSYLINNFGFSPQSASKLSSTYNVCFKNAQKPDSVLTFFRNYGFSDSQLRLTISKEPWLLSCNPSKRVLPKFQFFLSKGASNSDIVNIVTKNPKILKASLNNKIIKAYQLIYRFLQSDKVIIDCVIRNPSFFGDARVVSNIILLIANGVADSNIKRMLCVRSQAFQTPTHDMLKLVEELKNLGFTPSKSTFGVALLAKLSVRKTLWGEKVDAFKKWGWSDEDVLQAFRRQPHCMLTSIDKINLLMNFWVNQLGWDALALAKGPAVFSLSFEKRVLPRASVLQYLLKKGLRNKNASLTCPFVVPEKLFLDTCIKGIKESSYLLKLYEEKLNLAYTMDKTCTS*