AlfalfaGEDB | MsaG007769

M. sativa ssp. caerulea / MsaG007769

KEGG: K15032
GO: -
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007769	KEH37295.1	67.347	392	75	3	15	355	23	412	1.35e-179	514

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007769	tr\|A0A072VGL0\|A0A072VGL0_MEDTR	67.347	392	75	3	15	355	23	412	6.43e-180	514

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TFs/TRs:

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Gene ID	Type	Classification
MsaG007769	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001295	MsaG007769	0.801852	1.242000e-48	1.751122e-46
MsaG004030	MsaG007769	0.801630	1.378871e-48	1.934282e-46
MsaG005387	MsaG007769	0.820172	1.382549e-52	3.054770e-50
MsaG006833	MsaG007769	0.804893	2.932594e-49	4.434942e-47
MsaG006934	MsaG007769	0.801338	1.581937e-48	2.204493e-46
MsaG007769	MsaG012586	0.813951	3.404787e-51	6.410604e-49
MsaG007769	MsaG015953	0.813140	5.124652e-51	9.454322e-49
MsaG007769	MsaG018015	0.808472	5.186781e-50	8.537302e-48
MsaG007769	MsaG023630	0.810247	2.168073e-50	3.724779e-48
MsaG007769	MsaG024879	0.800959	1.888703e-48	2.609476e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007769	MtrunA17_Chr2g0296221	67.347	392	75	3	15	355	47	436	0.0	513
MsaG007769	MtrunA17_Chr2g0296711	60.934	407	100	5	1	352	1	403	1.05e-155	444
MsaG007769	MtrunA17_Chr2g0296171	59.383	389	102	4	1	333	7	395	1.13e-148	425
MsaG007769	MtrunA17_Chr2g0296191	63.215	367	82	3	15	330	630	994	1.42e-148	445
MsaG007769	MtrunA17_Chr2g0296191	51.813	386	120	7	1	332	136	509	1.57e-108	340
MsaG007769	MtrunA17_Chr2g0296231	57.816	403	103	6	1	346	1	393	5.07e-147	421
MsaG007769	MtrunA17_Chr2g0296741	58.201	378	108	3	22	353	48	421	3.99e-145	417
MsaG007769	MtrunA17_Chr2g0296211	61.345	357	82	4	1	349	66	374	2.30e-139	400
MsaG007769	MtrunA17_Chr2g0296721	56.992	379	112	4	22	354	28	401	1.55e-136	394
MsaG007769	MtrunA17_Chr2g0315731	56.878	378	113	3	22	353	48	421	3.26e-135	392

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007769	AT5G07900.1	28.686	373	202	9	16	330	33	399	1.58e-37	139
MsaG007769	AT1G21150.1	26.061	330	193	5	48	328	57	384	2.95e-28	114
MsaG007769	AT1G21150.3	25.749	334	197	5	44	328	17	348	2.95e-28	113
MsaG007769	AT1G21150.2	26.061	330	193	5	48	328	121	448	9.08e-28	113
MsaG007769	AT5G64950.1	26.513	347	198	8	39	330	31	375	1.61e-21	95.1
MsaG007769	AT1G61980.3	24.857	350	179	11	48	316	53	399	8.37e-15	75.5
MsaG007769	AT1G61980.2	24.857	350	179	11	48	316	53	399	8.37e-15	75.5
MsaG007769	AT1G61980.1	24.857	350	179	11	48	316	53	399	8.37e-15	75.5
MsaG007769	AT1G61970.2	22.571	350	187	9	48	316	53	399	3.95e-12	67.4
MsaG007769	AT1G61970.7	22.571	350	187	9	48	316	53	399	3.95e-12	67.4

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Find 60 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTTGAGAGCAGATTG+AGG	0.549590	2:-22693541	None:intergenic
AAAGGATTTGATTAAGTCAT+TGG	0.323129	2:+22694017	MsaT007769.1:CDS
AACAATTGTTCCAAGGGCAT+TGG	0.458416	2:+22694326	MsaT007769.1:CDS
AAGAAGGTGAGAACTGAATT+AGG	0.306086	2:-22693601	None:intergenic
AAGTTGATGCCCTTAAGAAA+TGG	0.388575	2:+22694136	MsaT007769.1:CDS
AATTGATATTAGACACAATA+AGG	0.329025	2:-22693921	None:intergenic
ACACATTCGGTAGATGGCAT+TGG	0.528449	2:-22694534	None:intergenic
ACATCGAATTAAGCAAACAA+TGG	0.642451	2:-22693869	None:intergenic
ACCTAAAACTACATTTGTGG+CGG	0.636797	2:-22693381	None:intergenic
AGAAACCAAAATTGTTGATG+AGG	0.561539	2:-22693516	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	22693361	22694566	22693361	ID=MsaG007769
Chr2	mRNA	22693361	22694566	22693361	ID=MsaT007769.1;Parent=MsaG007769
Chr2	exon	22693361	22693707	22693361	ID=MsaT007769.1.exon1;Parent=MsaT007769.1
Chr2	CDS	22693361	22693707	22693361	ID=cds.MsaT007769.1;Parent=MsaT007769.1
Chr2	exon	22693846	22694566	22693846	ID=MsaT007769.1.exon2;Parent=MsaT007769.1
Chr2	CDS	22693846	22694566	22693846	ID=cds.MsaT007769.1;Parent=MsaT007769.1

Gene Sequence

>MsaT007769.1

ATGTTGAAGAAATTGTTTCTCCGCCACAAATGTAGTTTTAGGTCTCATCACAACAACCCTCAACACTTGTTGTTCCCGATTTCACTCATCAGATACTACAACACTACAATAACAACAACATCTGAATCAAACACACACCCATTCGCTGTATCATACCTCATCAACAATTTTGGTTTCTCACCTCAATCTGCTCTCAAAGCTTTCAACAACAAGCAGGTTCGTTTCAATACCCTTGAAAAGCCTAATTCAGTTCTCACCTTCTTAGAAAACCATGGTTTTTCACACGACAACATACGCGTCATCATCAAAAAAGAACCTTGGTTACTTTCATCACAACCCCACAAAAGGTTCTTTAAAACCGACAAGGATACCATTGTTTGCTTAATTCGATGTTGGACTGCACTTGCTATTAATCCCTATCACCTTATTGTGTCTAATATCAATTTAATGTCTGATTTTGGAGTTTCTGATTCTGTCATTGCTAGCTCGCTTCAGTCAAGGCCATCTACATTTGGTTCAAAGGATTTGATTAAGTCATTGGAGGAAGTTAAGAGTTTAGGGTTTGATCCTTGGACGAATACTTTTGGAATTGCTTTGGCAGCTAAGAAAAGTTTGAGTAAAAAACTTTGGGATGAGAAAGTTGATGCCCTTAAGAAATGGGGTTGGTCTAATGAAGCTGTTTTTCAAGCATTTAGGATGCATCCTGGTTTCATGTTGACTTCAATTGATAAGATTAATTTGGTGATGAGTTTTTGGGTTAATCAATTGGGTGGGAATTCCTTGGCACTTGCTAAAAGGCCACATATTTTTGATTCAAGTTTGCAGAAAACAATTGTTCCAAGGGCATTGGTTCTGCAATATCTTGTGATGAAAGGTTTGAGGAAAAAGAATGCAAGCTTAGTTGAACCATTTCGTTATTCTGGGAAAATGTTCTTGAGCAAGTTTGTTTTCAGCTTTAAGGAGGAGTCTGATTATCTATTAAAGTTATATGACGAAAAAATGAAACTTGCATACACAAAAGAGAACAATGGCATGCCAATGCCATCTACCGAATGTGTAACTTGTTAA

Protein sequence

>MsaT007769.1

MLKKLFLRHKCSFRSHHNNPQHLLFPISLIRYYNTTITTTSESNTHPFAVSYLINNFGFSPQSALKAFNNKQVRFNTLEKPNSVLTFLENHGFSHDNIRVIIKKEPWLLSSQPHKRFFKTDKDTIVCLIRCWTALAINPYHLIVSNINLMSDFGVSDSVIASSLQSRPSTFGSKDLIKSLEEVKSLGFDPWTNTFGIALAAKKSLSKKLWDEKVDALKKWGWSNEAVFQAFRMHPGFMLTSIDKINLVMSFWVNQLGGNSLALAKRPHIFDSSLQKTIVPRALVLQYLVMKGLRKKNASLVEPFRYSGKMFLSKFVFSFKEESDYLLKLYDEKMKLAYTKENNGMPMPSTECVTC*