AlfalfaGEDB | MsaG007770

M. sativa ssp. caerulea / MsaG007770

KEGG: K15032
GO: -
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007770	XP_013463284.1	90.796	402	31	1	1	402	1	396	0.0	729

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007770	tr\|A0A072V6Q5\|A0A072V6Q5_MEDTR	90.796	402	31	1	1	402	1	396	0.0	729

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TFs/TRs:

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Gene ID	Type	Classification
MsaG007770	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG007770	MsaG019790	0.809140	3.738812e-50	6.253834e-48
MsaG007770	MsaG024327	0.810537	1.878018e-50	3.249442e-48
MsaG007770	MsaG034286	0.845620	6.805930e-59	3.183142e-56
MsaG007770	MsaG041971	0.802718	8.253883e-49	1.186961e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007770	MtrunA17_Chr2g0296231	90.796	402	31	1	1	402	1	396	0.0	729
MsaG007770	MtrunA17_Chr2g0296221	72.208	403	108	2	1	399	25	427	0.0	573
MsaG007770	MtrunA17_Chr2g0296191	71.576	387	106	2	1	383	608	994	0.0	551
MsaG007770	MtrunA17_Chr2g0296191	58.774	359	135	5	31	385	160	509	1.23e-129	398
MsaG007770	MtrunA17_Chr2g0296711	72.818	401	105	2	1	399	1	399	0.0	544
MsaG007770	MtrunA17_Chr2g0296721	68.812	404	116	4	1	401	1	397	0.0	533
MsaG007770	MtrunA17_Chr2g0315731	66.501	403	128	2	1	401	21	418	0.0	517
MsaG007770	MtrunA17_Chr2g0296741	64.268	403	137	2	1	401	21	418	2.92e-179	505
MsaG007770	MtrunA17_Chr2g0296171	69.036	394	109	4	1	386	7	395	6.72e-178	501
MsaG007770	MtrunA17_Chr2g0296181	65.174	402	107	4	1	400	1	371	6.28e-172	486

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007770	AT5G07900.1	31.025	361	240	7	30	384	43	400	1.17e-52	181
MsaG007770	AT1G21150.1	31.595	326	214	4	57	377	57	378	3.90e-46	163
MsaG007770	AT1G21150.3	31.138	334	221	4	49	377	13	342	1.01e-45	161
MsaG007770	AT1G21150.2	31.595	326	214	4	57	377	121	442	2.53e-45	162
MsaG007770	AT1G61970.2	27.119	354	212	9	57	371	53	399	6.04e-30	120
MsaG007770	AT1G61970.7	27.119	354	212	9	57	371	53	399	6.04e-30	120
MsaG007770	AT1G61970.6	27.119	354	212	9	57	371	53	399	6.04e-30	120
MsaG007770	AT1G61970.3	27.119	354	212	9	57	371	53	399	6.04e-30	120
MsaG007770	AT1G61970.5	27.119	354	212	9	57	371	53	399	6.04e-30	120
MsaG007770	AT1G61970.4	27.119	354	212	9	57	371	53	399	6.04e-30	120

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Find 70 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGGTTGTTGAATTT+TGG	0.120653	2:-22701815	None:intergenic
AAAATGGGAATGAGAAGTTT+GGG	0.423820	2:-22701841	None:intergenic
AAACTATAACCAAACATATG+TGG	0.543018	2:-22702712	None:intergenic
AAAGCTTTGAGAGCAGATTG+AGG	0.511231	2:-22701956	None:intergenic
AACTGATTTGATTAAGTCAT+TGG	0.339262	2:+22702432	MsaT007770.1:CDS
AAGAAACCATTTCTTCAACA+TGG	0.592220	2:-22701747	None:intergenic
AAGAAATTGATAACTGAATT+AGG	0.176367	2:-22702016	None:intergenic
AAGCTACTTCGCAAAATTCG+AGG	0.497556	2:-22702199	None:intergenic
AAGTCATTGGAAGAAGTTCA+TGG	0.433750	2:+22702445	MsaT007770.1:CDS
AATGAAACCTGCATACACAA+AGG	0.664808	2:+22702906	MsaT007770.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	22701749	22702957	22701749	ID=MsaG007770
Chr2	mRNA	22701749	22702957	22701749	ID=MsaT007770.1;Parent=MsaG007770
Chr2	exon	22701749	22702957	22701749	ID=MsaT007770.1.exon1;Parent=MsaT007770.1
Chr2	CDS	22701749	22702957	22701749	ID=cds.MsaT007770.1;Parent=MsaT007770.1

Gene Sequence

>MsaT007770.1

ATGTTGAAGAAATGGTTTCTTTCCCAGAATGTTGCTTTAGGCATCATCACCACAAAATCAACAACCCCAAAATTCAACAACCCTCTTTTGAACCCAAACTTCTCATTCCCATTTTCACTCACAAGATTCTCCACCACAACATCAGAGTCAGAATCAGTCACACCACCATTTGCTGTATCGTACCTCATCAACAATTTTGATTTCACTCCTCAATCTGCTCTCAAAGCTTTCAACAACAATCAGGTTCTTTTCAAATCTGCAGAAAATCCTAATTCAGTTATCAATTTCTTCAAAAACCGTGATTTTTCACACTCCGACATACGAATCATCATTAGAAAAGCGCCATGGTTACTTTCATTACAACCCCACAATATAATTTTGCCCAAGTTTGAATTTTTTCTATCCAAAGGTGCTACTTCATCTGATATTGTTTCATTCATAACCGCAAACCCTCGAATTTTGCGAAGTAGCTTGGAGAAACGAATAATCCCTCTTTTTCAATTGTTCAGTAGGTTTTTGAAAACCAACAAGGATATCATTCTTTGCTTACTTCGACATTCGACTTATGTTACTTTTAATTCCTATCACCTTGTTGTGGCTAATATCAATTTGATGACTGATTTTGGAGTTTCTGATTCTGTCATTTCTAGATTGCTTCTGAAAAGGCCATCTATATTTGGTTCAACTGATTTGATTAAGTCATTGGAAGAAGTTCATGGTTTAGGATTTGATCCTTCAATGGCTACTTTTGGGGATGCTTTGTTTGCCAAGAAATGTATGAGTAAAACACGGTGGGATGAGAAAGTTGATGTTTTTAAGAAATGGGGTTGGTTTGATGAAGCTTTTTTTCAAGCATTTAGGTTGCATCCTAGTTTGATGTTGGCTTCAATTGAAAAGATTAATTTTGTGATGCATTTTTGGGTCAACCAATTGGGTTGGGATTCCTTGGAACTTACTAAATGTCCACATATGTTTGGTTATAGTTTACATCAAAGGATCATTCCAAGGGCCTCAGTTTTGCAATTTCTTTTGATGAAAGGTTTGCGAGATAAGAATGAAAGCTTAGTTACACCATTTGCTCATTCTGAGAAATTTTTCTTGAGCAAGTTTGTCTTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATGTGGAAAAAATGAAACCTGCATACACAAAGGAGAACAATGGCATGCCATTCACTAATTAG

Protein sequence

>MsaT007770.1

MLKKWFLSQNVALGIITTKSTTPKFNNPLLNPNFSFPFSLTRFSTTTSESESVTPPFAVSYLINNFDFTPQSALKAFNNNQVLFKSAENPNSVINFFKNRDFSHSDIRIIIRKAPWLLSLQPHNIILPKFEFFLSKGATSSDIVSFITANPRILRSSLEKRIIPLFQLFSRFLKTNKDIILCLLRHSTYVTFNSYHLVVANINLMTDFGVSDSVISRLLLKRPSIFGSTDLIKSLEEVHGLGFDPSMATFGDALFAKKCMSKTRWDEKVDVFKKWGWFDEAFFQAFRLHPSLMLASIEKINFVMHFWVNQLGWDSLELTKCPHMFGYSLHQRIIPRASVLQFLLMKGLRDKNESLVTPFAHSEKFFLSKFVFKEESDYLLKLYVEKMKPAYTKENNGMPFTN*