Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007822 | XP_024631484.1 | 35.443 | 158 | 74 | 5 | 2 | 159 | 1 | 130 | 4.17e-12 | 80.9 |
MsaG007822 | XP_024631484.1 | 50.935 | 214 | 64 | 4 | 108 | 318 | 186 | 361 | 1.02e-50 | 191 |
MsaG007822 | XP_024631484.1 | 71.247 | 393 | 88 | 2 | 227 | 596 | 27 | 417 | 0.0 | 559 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007822 | tr|A0A072V6R1|A0A072V6R1_MEDTR | 48.372 | 215 | 68 | 4 | 108 | 318 | 182 | 357 | 8.89e-48 | 182 |
MsaG007822 | tr|A0A072V6R1|A0A072V6R1_MEDTR | 66.748 | 412 | 108 | 3 | 211 | 599 | 11 | 416 | 0.0 | 544 |
Gene ID | Type | Classification |
---|---|---|
MsaG007822 | TR | mTERF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007822 | MtrunA17_Chr2g0296291 | 66.748 | 412 | 108 | 3 | 211 | 599 | 11 | 416 | 0.0 | 544 |
MsaG007822 | MtrunA17_Chr2g0296291 | 48.372 | 215 | 68 | 4 | 108 | 318 | 182 | 357 | 1.71e-51 | 182 |
MsaG007822 | MtrunA17_Chr2g0296291 | 35.714 | 140 | 63 | 4 | 20 | 159 | 14 | 126 | 5.72e-14 | 74.3 |
MsaG007822 | MtrunA17_Chr2g0296251 | 69.474 | 380 | 91 | 2 | 227 | 581 | 19 | 398 | 0.0 | 518 |
MsaG007822 | MtrunA17_Chr2g0296251 | 48.598 | 214 | 69 | 4 | 108 | 318 | 182 | 357 | 1.03e-46 | 169 |
MsaG007822 | MtrunA17_Chr2g0296251 | 37.681 | 138 | 61 | 4 | 26 | 159 | 10 | 126 | 2.68e-17 | 84.3 |
MsaG007822 | MtrunA17_Chr2g0296711 | 68.508 | 362 | 100 | 2 | 238 | 597 | 53 | 402 | 4.41e-173 | 498 |
MsaG007822 | MtrunA17_Chr2g0296711 | 59.524 | 294 | 57 | 3 | 1 | 232 | 1 | 294 | 5.34e-94 | 295 |
MsaG007822 | MtrunA17_Chr2g0296221 | 67.112 | 374 | 103 | 4 | 229 | 594 | 66 | 427 | 5.64e-170 | 490 |
MsaG007822 | MtrunA17_Chr2g0296221 | 50.152 | 329 | 95 | 5 | 1 | 263 | 25 | 350 | 7.45e-89 | 282 |
MsaG007822 | MtrunA17_Chr2g0296231 | 64.341 | 387 | 119 | 5 | 213 | 596 | 25 | 395 | 4.23e-167 | 481 |
MsaG007822 | MtrunA17_Chr2g0296231 | 47.175 | 354 | 112 | 6 | 1 | 287 | 1 | 346 | 8.16e-87 | 275 |
MsaG007822 | MtrunA17_Chr2g0296721 | 66.849 | 365 | 106 | 3 | 237 | 599 | 49 | 400 | 4.00e-166 | 479 |
MsaG007822 | MtrunA17_Chr2g0296721 | 46.129 | 310 | 105 | 5 | 1 | 251 | 1 | 307 | 8.41e-69 | 228 |
MsaG007822 | MtrunA17_Chr2g0315731 | 65.395 | 367 | 113 | 2 | 237 | 601 | 69 | 423 | 4.02e-162 | 469 |
MsaG007822 | MtrunA17_Chr2g0315731 | 43.421 | 380 | 115 | 7 | 1 | 318 | 21 | 362 | 5.31e-77 | 250 |
MsaG007822 | MtrunA17_Chr2g0296741 | 63.836 | 365 | 118 | 2 | 237 | 599 | 69 | 421 | 1.16e-159 | 463 |
MsaG007822 | MtrunA17_Chr2g0296741 | 42.895 | 380 | 117 | 9 | 1 | 318 | 21 | 362 | 1.09e-71 | 236 |
MsaG007822 | MtrunA17_Chr2g0296171 | 61.780 | 382 | 120 | 5 | 214 | 581 | 26 | 395 | 1.19e-151 | 442 |
MsaG007822 | MtrunA17_Chr2g0296171 | 44.819 | 386 | 107 | 7 | 1 | 318 | 7 | 354 | 6.76e-83 | 265 |
MsaG007822 | MtrunA17_Chr2g0296191 | 66.201 | 358 | 101 | 4 | 229 | 578 | 649 | 994 | 2.20e-151 | 462 |
MsaG007822 | MtrunA17_Chr2g0296191 | 59.770 | 348 | 125 | 2 | 233 | 580 | 177 | 509 | 2.67e-132 | 412 |
MsaG007822 | MtrunA17_Chr2g0296191 | 50.760 | 329 | 93 | 5 | 1 | 263 | 608 | 933 | 2.64e-86 | 290 |
MsaG007822 | MtrunA17_Chr2g0296191 | 39.114 | 271 | 99 | 6 | 37 | 252 | 177 | 436 | 6.71e-44 | 168 |
MsaG007822 | MtrunA17_Chr2g0296181 | 60.574 | 383 | 108 | 6 | 215 | 593 | 26 | 369 | 1.94e-144 | 423 |
MsaG007822 | MtrunA17_Chr2g0296181 | 52.397 | 292 | 70 | 5 | 1 | 228 | 1 | 287 | 5.68e-84 | 268 |
MsaG007822 | MtrunA17_Chr2g0296151 | 51.226 | 367 | 162 | 3 | 227 | 591 | 29 | 380 | 1.31e-126 | 377 |
MsaG007822 | MtrunA17_Chr2g0296151 | 33.241 | 361 | 135 | 10 | 17 | 318 | 16 | 329 | 6.14e-41 | 152 |
MsaG007822 | MtrunA17_Chr2g0295741 | 49.606 | 381 | 175 | 3 | 215 | 593 | 23 | 388 | 8.49e-123 | 368 |
MsaG007822 | MtrunA17_Chr2g0295741 | 34.473 | 351 | 126 | 9 | 26 | 318 | 31 | 335 | 2.24e-44 | 162 |
MsaG007822 | MtrunA17_Chr2g0296301 | 51.762 | 369 | 159 | 5 | 224 | 588 | 20 | 373 | 1.80e-122 | 367 |
MsaG007822 | MtrunA17_Chr2g0296301 | 35.587 | 281 | 121 | 10 | 33 | 259 | 25 | 299 | 6.74e-40 | 150 |
MsaG007822 | MtrunA17_Chr2g0296111 | 51.639 | 366 | 157 | 5 | 228 | 589 | 29 | 378 | 1.78e-120 | 362 |
MsaG007822 | MtrunA17_Chr2g0296111 | 33.913 | 345 | 123 | 9 | 34 | 318 | 31 | 330 | 6.13e-40 | 150 |
MsaG007822 | MtrunA17_Chr2g0296121 | 49.593 | 369 | 169 | 3 | 227 | 593 | 115 | 468 | 4.87e-117 | 356 |
MsaG007822 | MtrunA17_Chr2g0296121 | 34.746 | 354 | 123 | 9 | 23 | 318 | 112 | 415 | 8.15e-43 | 160 |
MsaG007822 | MtrunA17_Chr2g0295731 | 47.215 | 377 | 181 | 5 | 212 | 585 | 20 | 381 | 8.67e-114 | 344 |
MsaG007822 | MtrunA17_Chr2g0295731 | 33.621 | 348 | 128 | 10 | 34 | 323 | 39 | 341 | 1.37e-42 | 157 |
MsaG007822 | MtrunA17_Chr4g0067121 | 47.207 | 358 | 173 | 3 | 233 | 589 | 46 | 388 | 1.40e-109 | 334 |
MsaG007822 | MtrunA17_Chr4g0067121 | 28.824 | 340 | 144 | 9 | 41 | 323 | 46 | 344 | 3.71e-35 | 137 |
MsaG007822 | MtrunA17_Chr2g0296551 | 78.392 | 199 | 43 | 0 | 398 | 596 | 1 | 199 | 1.80e-109 | 327 |
MsaG007822 | MtrunA17_Chr2g0296551 | 46.409 | 181 | 56 | 4 | 141 | 318 | 1 | 143 | 6.59e-39 | 141 |
MsaG007822 | MtrunA17_Chr2g0295761 | 50.852 | 352 | 157 | 4 | 232 | 582 | 54 | 390 | 4.25e-103 | 317 |
MsaG007822 | MtrunA17_Chr2g0295761 | 30.702 | 342 | 141 | 8 | 39 | 324 | 53 | 354 | 2.53e-31 | 125 |
MsaG007822 | MtrunA17_Chr2g0296701 | 82.286 | 175 | 31 | 0 | 427 | 601 | 2 | 176 | 2.85e-100 | 302 |
MsaG007822 | MtrunA17_Chr2g0296701 | 39.669 | 121 | 68 | 2 | 170 | 287 | 2 | 120 | 8.07e-19 | 84.3 |
MsaG007822 | MtrunA17_Chr4g0067141 | 45.000 | 340 | 172 | 2 | 240 | 579 | 46 | 370 | 2.78e-90 | 283 |
MsaG007822 | MtrunA17_Chr4g0067141 | 37.008 | 254 | 100 | 5 | 30 | 228 | 28 | 276 | 1.68e-37 | 143 |
MsaG007822 | MtrunA17_Chr2g0296211 | 64.789 | 213 | 72 | 1 | 385 | 594 | 159 | 371 | 3.84e-88 | 278 |
MsaG007822 | MtrunA17_Chr2g0296211 | 48.327 | 269 | 93 | 5 | 1 | 263 | 66 | 294 | 3.04e-71 | 234 |
MsaG007822 | MtrunA17_Chr2g0296211 | 36.052 | 233 | 110 | 11 | 215 | 430 | 91 | 301 | 1.74e-20 | 93.6 |
MsaG007822 | MtrunA17_Chr4g0067671 | 45.536 | 336 | 166 | 3 | 231 | 564 | 35 | 355 | 2.53e-87 | 275 |
MsaG007822 | MtrunA17_Chr4g0067671 | 33.540 | 322 | 149 | 9 | 20 | 283 | 18 | 332 | 1.24e-40 | 151 |
MsaG007822 | MtrunA17_Chr2g0286191 | 43.228 | 347 | 178 | 6 | 237 | 581 | 30 | 359 | 7.09e-79 | 253 |
MsaG007822 | MtrunA17_Chr2g0286191 | 28.190 | 337 | 134 | 10 | 44 | 318 | 29 | 319 | 2.82e-25 | 107 |
MsaG007822 | MtrunA17_Chr2g0296751 | 78.231 | 147 | 31 | 1 | 453 | 599 | 1 | 146 | 4.47e-75 | 236 |
MsaG007822 | MtrunA17_Chr2g0296131 | 57.225 | 173 | 74 | 0 | 421 | 593 | 2 | 174 | 6.98e-65 | 210 |
MsaG007822 | MtrunA17_Chr2g0296131 | 35.762 | 151 | 56 | 4 | 171 | 318 | 9 | 121 | 8.75e-19 | 84.3 |
MsaG007822 | MtrunA17_Chr2g0296161 | 53.801 | 171 | 79 | 0 | 424 | 594 | 1 | 171 | 4.74e-59 | 194 |
MsaG007822 | MtrunA17_Chr2g0296161 | 53.030 | 66 | 31 | 0 | 167 | 232 | 1 | 66 | 7.36e-18 | 81.6 |
MsaG007822 | MtrunA17_Chr2g0296561 | 63.846 | 130 | 33 | 2 | 227 | 356 | 27 | 142 | 5.83e-46 | 159 |
MsaG007822 | MtrunA17_Chr2g0296561 | 35.443 | 158 | 74 | 5 | 2 | 159 | 1 | 130 | 1.91e-17 | 79.7 |
MsaG007822 | MtrunA17_Chr4g0001831 | 29.855 | 345 | 222 | 6 | 240 | 579 | 39 | 368 | 1.77e-42 | 157 |
MsaG007822 | MtrunA17_Chr4g0001831 | 24.138 | 319 | 172 | 9 | 34 | 289 | 25 | 336 | 3.23e-17 | 84.0 |
MsaG007822 | MtrunA17_Chr2g0295721 | 58.407 | 113 | 47 | 0 | 424 | 536 | 1 | 113 | 2.59e-39 | 140 |
MsaG007822 | MtrunA17_Chr2g0295721 | 44.706 | 85 | 45 | 1 | 167 | 251 | 1 | 83 | 1.88e-16 | 75.9 |
MsaG007822 | MtrunA17_Chr2g0286221 | 46.914 | 162 | 82 | 3 | 426 | 586 | 16 | 174 | 3.77e-39 | 142 |
MsaG007822 | MtrunA17_Chr2g0286221 | 31.818 | 154 | 61 | 5 | 169 | 318 | 16 | 129 | 3.27e-12 | 65.5 |
MsaG007822 | MtrunA17_Chr2g0295711 | 40.462 | 173 | 86 | 3 | 230 | 400 | 38 | 195 | 1.80e-32 | 124 |
MsaG007822 | MtrunA17_Chr2g0295711 | 35.417 | 144 | 71 | 3 | 34 | 177 | 38 | 159 | 9.34e-18 | 82.4 |
MsaG007822 | MtrunA17_Chr2g0295751 | 46.053 | 152 | 68 | 2 | 227 | 376 | 36 | 175 | 4.75e-32 | 129 |
MsaG007822 | MtrunA17_Chr2g0295751 | 50.538 | 93 | 39 | 2 | 23 | 112 | 25 | 113 | 3.94e-15 | 78.2 |
MsaG007822 | MtrunA17_Chr8g0377801 | 27.900 | 319 | 214 | 3 | 263 | 579 | 81 | 385 | 1.78e-31 | 126 |
MsaG007822 | MtrunA17_Chr8g0377781 | 27.922 | 308 | 206 | 3 | 270 | 575 | 75 | 368 | 4.78e-29 | 119 |
MsaG007822 | MtrunA17_Chr4g0067131 | 49.383 | 81 | 41 | 0 | 497 | 577 | 1 | 81 | 2.72e-21 | 88.6 |
MsaG007822 | MtrunA17_Chr4g0067681 | 55.738 | 61 | 27 | 0 | 486 | 546 | 1 | 61 | 6.01e-16 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007822 | AT5G07900.1 | 32.456 | 342 | 216 | 4 | 240 | 578 | 70 | 399 | 1.72e-56 | 196 |
MsaG007822 | AT5G07900.1 | 25.468 | 267 | 139 | 6 | 24 | 232 | 46 | 310 | 1.22e-16 | 82.8 |
MsaG007822 | AT1G21150.3 | 31.304 | 345 | 218 | 4 | 237 | 576 | 18 | 348 | 5.23e-44 | 160 |
MsaG007822 | AT1G21150.1 | 31.579 | 342 | 215 | 4 | 240 | 576 | 57 | 384 | 5.38e-44 | 162 |
MsaG007822 | AT1G21150.2 | 31.579 | 342 | 215 | 4 | 240 | 576 | 121 | 448 | 2.28e-43 | 161 |
MsaG007822 | AT1G61990.2 | 28.997 | 369 | 201 | 7 | 240 | 569 | 53 | 399 | 2.00e-38 | 147 |
MsaG007822 | AT1G61990.1 | 28.997 | 369 | 201 | 7 | 240 | 569 | 53 | 399 | 2.00e-38 | 147 |
MsaG007822 | AT1G61980.3 | 29.670 | 364 | 200 | 7 | 240 | 564 | 53 | 399 | 3.17e-37 | 143 |
MsaG007822 | AT1G61980.2 | 29.670 | 364 | 200 | 7 | 240 | 564 | 53 | 399 | 3.17e-37 | 143 |
MsaG007822 | AT1G61980.1 | 29.670 | 364 | 200 | 7 | 240 | 564 | 53 | 399 | 3.17e-37 | 143 |
MsaG007822 | AT1G61970.2 | 28.108 | 370 | 198 | 9 | 240 | 564 | 53 | 399 | 1.77e-34 | 135 |
MsaG007822 | AT1G61970.7 | 28.108 | 370 | 198 | 9 | 240 | 564 | 53 | 399 | 1.77e-34 | 135 |
MsaG007822 | AT1G61970.6 | 28.108 | 370 | 198 | 9 | 240 | 564 | 53 | 399 | 1.77e-34 | 135 |
MsaG007822 | AT1G61970.3 | 28.108 | 370 | 198 | 9 | 240 | 564 | 53 | 399 | 1.77e-34 | 135 |
MsaG007822 | AT1G61970.5 | 28.108 | 370 | 198 | 9 | 240 | 564 | 53 | 399 | 1.77e-34 | 135 |
MsaG007822 | AT1G61970.4 | 28.108 | 370 | 198 | 9 | 240 | 564 | 53 | 399 | 1.77e-34 | 135 |
MsaG007822 | AT1G61970.1 | 28.108 | 370 | 198 | 9 | 240 | 564 | 53 | 399 | 1.77e-34 | 135 |
MsaG007822 | AT1G62120.1 | 27.945 | 365 | 213 | 6 | 237 | 564 | 54 | 405 | 4.53e-33 | 132 |
MsaG007822 | AT5G64950.1 | 28.926 | 363 | 232 | 10 | 230 | 579 | 27 | 376 | 7.18e-31 | 125 |
MsaG007822 | AT3G46950.1 | 29.845 | 258 | 161 | 5 | 240 | 496 | 53 | 291 | 4.49e-28 | 117 |
MsaG007822 | AT3G46950.1 | 22.597 | 385 | 224 | 10 | 26 | 357 | 30 | 393 | 1.95e-11 | 67.0 |
MsaG007822 | AT1G61960.1 | 30.469 | 256 | 161 | 4 | 240 | 493 | 53 | 293 | 1.06e-25 | 110 |
MsaG007822 | AT1G62085.1 | 30.038 | 263 | 154 | 4 | 240 | 493 | 56 | 297 | 1.79e-24 | 107 |
MsaG007822 | AT1G62085.2 | 30.038 | 263 | 154 | 4 | 240 | 493 | 56 | 297 | 1.79e-24 | 107 |
MsaG007822 | AT1G62150.1 | 24.029 | 412 | 210 | 10 | 240 | 570 | 59 | 448 | 2.05e-24 | 107 |
MsaG007822 | AT1G62110.1 | 29.231 | 260 | 162 | 5 | 240 | 494 | 53 | 295 | 2.27e-24 | 107 |
MsaG007822 | AT1G62010.1 | 26.364 | 330 | 189 | 6 | 272 | 564 | 71 | 383 | 1.40e-22 | 100 |
MsaG007822 | AT5G23930.1 | 29.388 | 245 | 152 | 4 | 240 | 483 | 56 | 280 | 5.09e-19 | 90.5 |
MsaG007822 | AT1G56380.1 | 23.590 | 390 | 195 | 13 | 240 | 564 | 17 | 368 | 6.05e-15 | 77.4 |
MsaG007822 | AT1G56380.1 | 23.512 | 336 | 218 | 13 | 44 | 357 | 13 | 331 | 6.21e-12 | 68.2 |
MsaG007822 | AT1G56380.2 | 23.590 | 390 | 195 | 13 | 240 | 564 | 28 | 379 | 7.66e-15 | 77.4 |
MsaG007822 | AT1G56380.2 | 23.512 | 336 | 218 | 13 | 44 | 357 | 24 | 342 | 6.73e-12 | 68.2 |
Find 103 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAATTTGATGACTGATTT+TGG | 0.089088 | 2:+23301262 | MsaT007822.1:CDS |
ATCAATTTGATGATTGATTT+TGG | 0.116384 | 2:+23305223 | MsaT007822.1:CDS |
TTGGAGGAAGTTAAGGATTT+AGG | 0.126977 | 2:+23301361 | MsaT007822.1:CDS |
CAAACAAGGCCATCTATATT+TGG | 0.171090 | 2:+23305277 | MsaT007822.1:CDS |
TCCTACCTCATCGACAATTT+TGG | 0.204454 | 2:+23300839 | MsaT007822.1:CDS |
TTCAATTGATAAGATTAATT+TGG | 0.211307 | 2:+23305504 | MsaT007822.1:CDS |
AAGAAGTTGATAACCGAATT+AGG | 0.241335 | 2:-23300929 | None:intergenic |
GCAAACAACGGTATCCTTAC+TGG | 0.257406 | 2:-23305143 | None:intergenic |
TGGAGGAAGTTAAGGATTTA+GGG | 0.265989 | 2:+23301362 | MsaT007822.1:CDS |
AAGTCAAAGCCATCTATATT+TGG | 0.268618 | 2:+23301316 | MsaT007822.1:CDS |
CTCGAGGAAGTTAAGTGTTT+AGG | 0.270507 | 2:+23305322 | MsaT007822.1:CDS |
AGACCAACCCCATTTCTTAA+AGG | 0.278227 | 2:-23301470 | None:intergenic |
TCGAGGAAGTTAAGTGTTTA+GGG | 0.279746 | 2:+23305323 | MsaT007822.1:CDS |
CAGAATCTTGTGAGTGAAAC+TGG | 0.302241 | 2:-23300770 | None:intergenic |
AGACCAACCCCATTTCTTAA+AGG | 0.303126 | 2:-23305431 | None:intergenic |
GAAACTGGGAATGAGAATTT+TGG | 0.306496 | 2:-23300755 | None:intergenic |
TGCAGCGAATGGGTGAGTTT+TGG | 0.311280 | 2:-23300816 | None:intergenic |
AAAGGATTTGATTAAGTCAT+TGG | 0.323129 | 2:+23301342 | MsaT007822.1:CDS |
AAGCTAATGTGTAAAATTGT+AGG | 0.327898 | 2:-23305070 | None:intergenic |
AAGAAGTTGATAACTGAATC+TGG | 0.340602 | 2:-23304782 | None:intergenic |
TCCTTTGAACCAAATATAGA+TGG | 0.343999 | 2:-23301325 | None:intergenic |
TCAGTCATCAAATTGATATT+AGG | 0.347385 | 2:-23301256 | None:intergenic |
GTCAGATTCAGAAGCACCTT+TGG | 0.364937 | 2:-23304918 | None:intergenic |
AAGTTGATACCTTTAAGAAA+TGG | 0.365182 | 2:+23301461 | MsaT007822.1:CDS |
AGTTGATACCTTTAAGAAAT+GGG | 0.365271 | 2:+23301462 | MsaT007822.1:CDS |
AAATTGATGCCTTTAAGAAA+TGG | 0.366199 | 2:+23305422 | MsaT007822.1:CDS |
TTGGGTTAATCAATTGGGTT+GGG | 0.372882 | 2:+23305537 | MsaT007822.1:CDS |
AATTGATGCCTTTAAGAAAT+GGG | 0.373623 | 2:+23305423 | MsaT007822.1:CDS |
ACTAAATGTCCACATATGTT+TGG | 0.382004 | 2:+23305574 | MsaT007822.1:CDS |
TACCCTTGAAAAGCCTAATT+CGG | 0.387327 | 2:+23300916 | MsaT007822.1:CDS |
AATTGATATTAGGCACAATA+AGG | 0.389243 | 2:-23301246 | None:intergenic |
AAGATGTTATTCGAGTCTTT+AGG | 0.391869 | 2:+23305458 | MsaT007822.1:CDS |
TCTTACCTCATCGACAAATT+CGG | 0.397420 | 2:+23304698 | MsaT007822.1:CDS |
GACATTGTCCGCATGGTTAG+AGG | 0.397781 | 2:+23304938 | MsaT007822.1:CDS |
GCAGAAAATGATATCCTTGT+CGG | 0.406112 | 2:-23301182 | None:intergenic |
TAAGTCATTGGAGGAAGTTA+AGG | 0.406128 | 2:+23301354 | MsaT007822.1:CDS |
AGATCAAAATCTTACACGTT+TGG | 0.417689 | 2:-23305827 | None:intergenic |
GCCATCTATATTTGGTTCAA+AGG | 0.418741 | 2:+23301324 | MsaT007822.1:CDS |
CAAAGCTTTCAACCACAAAC+AGG | 0.422213 | 2:+23300883 | MsaT007822.1:CDS |
AATCTAGCAATGGTAGAATC+AGG | 0.440847 | 2:-23301289 | None:intergenic |
TCAGTTGAACCAAATATAGA+TGG | 0.441181 | 2:-23305286 | None:intergenic |
AATTGTAAAACTGTTGCCCT+TGG | 0.447622 | 2:-23305622 | None:intergenic |
AGTTTCACCGTTTACTTCTA+CGG | 0.454798 | 2:+23305684 | MsaT007822.1:CDS |
TTTCCTGCAATACCCAGAAA+AGG | 0.456578 | 2:+23304867 | MsaT007822.1:CDS |
TTTGGGTTAATCAATTGGGT+TGG | 0.479493 | 2:+23305536 | MsaT007822.1:CDS |
TCAAAATCTTACACGTTTGG+TGG | 0.487228 | 2:-23305824 | None:intergenic |
AAATTCTCCGTAGAAGTAAA+CGG | 0.504265 | 2:-23305691 | None:intergenic |
TTGGTTATAGTTTACATCAA+AGG | 0.507419 | 2:+23305593 | MsaT007822.1:CDS |
GATTTCTAAAACAACATTGT+GGG | 0.515141 | 2:-23300711 | None:intergenic |
CTCAAAGCTTCACAACACCT+TGG | 0.515370 | 2:+23304740 | MsaT007822.1:CDS |
AATTGATATTAGCCACCATA+AGG | 0.515847 | 2:-23305207 | None:intergenic |
GGATTCTGATTCAGATGTTG+TGG | 0.520706 | 2:-23300795 | None:intergenic |
ACACAGCGAATGGGTGTGAA+GGG | 0.521968 | 2:-23304676 | None:intergenic |
AATCTTACACGTTTGGTGGA+TGG | 0.526508 | 2:-23305820 | None:intergenic |
ATCAACTTCTTTCAAAACCA+TGG | 0.527116 | 2:+23300941 | MsaT007822.1:CDS |
CAAGCATTTAGGATACATCC+TGG | 0.534523 | 2:+23301508 | MsaT007822.1:CDS |
ATTAGGCACAATAAGGCGAT+AGG | 0.536156 | 2:-23301239 | None:intergenic |
AAACTATAACCAAACATATG+TGG | 0.543018 | 2:-23305583 | None:intergenic |
TAGGTTCTTCAAATCCAGTA+AGG | 0.543751 | 2:+23305129 | MsaT007822.1:CDS |
ATTGAAGTCAACATCAAATG+AGG | 0.545357 | 2:-23305487 | None:intergenic |
ATTGTAAAACTGTTGCCCTT+GGG | 0.546170 | 2:-23305621 | None:intergenic |
TTATCTATTAAAGCTATATG+AGG | 0.548013 | 2:+23305756 | MsaT007822.1:CDS |
AAAGCTTTGAGAGCAGATTG+AGG | 0.549590 | 2:-23300869 | None:intergenic |
TATTGAATCGAACCTGTTTG+TGG | 0.549925 | 2:-23300895 | None:intergenic |
ATGAGGTAGGATGCAGCGAA+TGG | 0.550896 | 2:-23300827 | None:intergenic |
GTTGATACCTTTAAGAAATG+GGG | 0.553181 | 2:+23301463 | MsaT007822.1:CDS |
TCAATTGGGTTGGGAGTCCG+TGG | 0.556415 | 2:+23305546 | MsaT007822.1:CDS |
TGAGGTAGGATGCAGCGAAT+GGG | 0.556920 | 2:-23300826 | None:intergenic |
GACACAGCGAATGGGTGTGA+AGG | 0.569465 | 2:-23304677 | None:intergenic |
ATTGATGCCTTTAAGAAATG+GGG | 0.570019 | 2:+23305424 | MsaT007822.1:CDS |
ATGAGGTAAGACACAGCGAA+TGG | 0.571025 | 2:-23304686 | None:intergenic |
GGATTTGATTAAGTCATTGG+AGG | 0.571043 | 2:+23301345 | MsaT007822.1:CDS |
TGAATCTGACATTGTCCGCA+TGG | 0.573592 | 2:+23304931 | MsaT007822.1:CDS |
TGAGGTAAGACACAGCGAAT+GGG | 0.579183 | 2:-23304685 | None:intergenic |
TGACTTAAGCAATCTAGCAA+TGG | 0.584754 | 2:-23301299 | None:intergenic |
ATGCCTTTAAGAAATGGGGT+TGG | 0.586352 | 2:+23305428 | MsaT007822.1:CDS |
ATACCTTTAAGAAATGGGGT+TGG | 0.587688 | 2:+23301467 | MsaT007822.1:CDS |
TCACTAATTTGCTTCAAACA+AGG | 0.589951 | 2:+23305263 | MsaT007822.1:CDS |
TGATTTCTAAAACAACATTG+TGG | 0.592125 | 2:-23300712 | None:intergenic |
ACCAAAATTGTCGATGAGGT+AGG | 0.597396 | 2:-23300840 | None:intergenic |
TCTGATCATGATGCGTAAGT+CGG | 0.598799 | 2:-23300975 | None:intergenic |
TACATCAAAGGATCATCCCA+AGG | 0.601647 | 2:+23305605 | MsaT007822.1:CDS |
TTAGGCACAATAAGGCGATA+GGG | 0.602741 | 2:-23301238 | None:intergenic |
AGCGAATGGGTGTGAAGGGG+TGG | 0.603382 | 2:-23304672 | None:intergenic |
TAATTGCCATCGCCTTATGG+TGG | 0.603597 | 2:+23305195 | MsaT007822.1:CDS |
TGGACATTTAGTAAGTTCCA+CGG | 0.615250 | 2:-23305563 | None:intergenic |
AATGAAACTTGCAAATACAA+AGG | 0.616117 | 2:+23305783 | MsaT007822.1:CDS |
ATTTCAAAAGTAGTCGTCGA+AGG | 0.618575 | 2:-23301391 | None:intergenic |
AGAAACCAAAATTGTCGATG+AGG | 0.637755 | 2:-23300844 | None:intergenic |
AGAATCCGAATTTGTCGATG+AGG | 0.644644 | 2:-23304703 | None:intergenic |
AGAATCTTGTGAGTGAAACT+GGG | 0.645981 | 2:-23300769 | None:intergenic |
GCAAATACAAAGGAGAACAA+TGG | 0.647365 | 2:+23305793 | MsaT007822.1:CDS |
TATTAGCCACCATAAGGCGA+TGG | 0.649019 | 2:-23305201 | None:intergenic |
CACAGCGAATGGGTGTGAAG+GGG | 0.654655 | 2:-23304675 | None:intergenic |
TGATTTGATTAAATCACTCG+AGG | 0.661488 | 2:+23305306 | MsaT007822.1:CDS |
GTATTGCAGGAAAGAAGCCA+TGG | 0.665041 | 2:-23304857 | None:intergenic |
TGTCTGAGTCAGTGAAACCG+TGG | 0.667521 | 2:-23304811 | None:intergenic |
ACATCAAAGGATCATCCCAA+GGG | 0.689405 | 2:+23305606 | MsaT007822.1:CDS |
ACATCATCGAAAGAGAACCA+TGG | 0.691372 | 2:+23304840 | MsaT007822.1:CDS |
TAGGTTCTTGAAAACCGACA+AGG | 0.703424 | 2:+23301168 | MsaT007822.1:intron |
ATGTCGAATTAAGCAAACAA+CGG | 0.712898 | 2:-23305155 | None:intergenic |
GAGGGTTACCTCTAACCATG+CGG | 0.732169 | 2:-23304946 | None:intergenic |
TCATGATCAGAAGAGCACCA+TGG | 0.740194 | 2:+23300987 | MsaT007822.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 23300689 | 23305846 | 23300689 | ID=MsaG007822 |
Chr2 | mRNA | 23300689 | 23305846 | 23300689 | ID=MsaT007822.1;Parent=MsaG007822 |
Chr2 | exon | 23300689 | 23301008 | 23300689 | ID=MsaT007822.1.exon1;Parent=MsaT007822.1 |
Chr2 | CDS | 23300689 | 23301008 | 23300689 | ID=cds.MsaT007822.1;Parent=MsaT007822.1 |
Chr2 | exon | 23301171 | 23301529 | 23301171 | ID=MsaT007822.1.exon2;Parent=MsaT007822.1 |
Chr2 | CDS | 23301171 | 23301529 | 23301171 | ID=cds.MsaT007822.1;Parent=MsaT007822.1 |
Chr2 | exon | 23304651 | 23304959 | 23304651 | ID=MsaT007822.1.exon3;Parent=MsaT007822.1 |
Chr2 | CDS | 23304651 | 23304959 | 23304651 | ID=cds.MsaT007822.1;Parent=MsaT007822.1 |
Chr2 | exon | 23305029 | 23305846 | 23305029 | ID=MsaT007822.1.exon4;Parent=MsaT007822.1 |
Chr2 | CDS | 23305029 | 23305846 | 23305029 | ID=cds.MsaT007822.1;Parent=MsaT007822.1 |
Gene Sequence |
Protein sequence |