Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007827 | XP_024631484.1 | 73.510 | 302 | 70 | 2 | 1 | 294 | 1 | 300 | 1.80e-150 | 439 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007827 | tr|A0A072V7I2|A0A072V7I2_MEDTR | 70.915 | 306 | 85 | 2 | 1 | 304 | 1 | 304 | 6.49e-143 | 419 |
Gene ID | Type | Classification |
---|---|---|
MsaG007827 | TR | mTERF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000005 | MsaG007827 | 0.827301 | 3.011264e-54 | 8.074665e-52 |
MsaG000553 | MsaG007827 | 0.814099 | 3.160076e-51 | 5.971787e-49 |
MsaG000566 | MsaG007827 | 0.860413 | 4.135365e-63 | 3.266846e-60 |
MsaG000545 | MsaG007827 | 0.800685 | 2.147010e-48 | 2.948283e-46 |
MsaG000911 | MsaG007827 | 0.800811 | 2.024229e-48 | 2.787497e-46 |
MsaG001285 | MsaG007827 | 0.829333 | 9.792025e-55 | 2.780119e-52 |
MsaG001772 | MsaG007827 | 0.848921 | 8.542404e-60 | 4.462549e-57 |
MsaG001858 | MsaG007827 | 0.869623 | 5.471517e-66 | 6.240869e-63 |
MsaG002810 | MsaG007827 | 0.808730 | 4.572915e-50 | 7.573939e-48 |
MsaG002975 | MsaG007827 | 0.822583 | 3.863736e-53 | 9.101830e-51 |
MsaG003305 | MsaG007827 | 0.806148 | 1.604233e-49 | 2.498273e-47 |
MsaG003306 | MsaG007827 | 0.811588 | 1.114374e-50 | 1.978345e-48 |
MsaG003375 | MsaG007827 | 0.811254 | 1.315555e-50 | 2.316458e-48 |
MsaG003517 | MsaG007827 | 0.821288 | 7.683626e-53 | 1.748499e-50 |
MsaG003740 | MsaG007827 | 0.800316 | 2.550945e-48 | 3.473696e-46 |
MsaG004510 | MsaG007827 | 0.827209 | 3.167207e-54 | 8.470878e-52 |
MsaG004820 | MsaG007827 | 0.832771 | 1.415238e-55 | 4.437678e-53 |
MsaG005257 | MsaG007827 | 0.867721 | 2.239740e-65 | 2.362122e-62 |
MsaG005941 | MsaG007827 | 0.810170 | 2.251341e-50 | 3.860587e-48 |
MsaG005942 | MsaG007827 | 0.815962 | 1.225056e-51 | 2.426592e-49 |
MsaG006140 | MsaG007827 | 0.827836 | 2.243286e-54 | 6.106548e-52 |
MsaG006563 | MsaG007827 | 0.833614 | 8.747354e-56 | 2.811654e-53 |
MsaG006909 | MsaG007827 | 0.832641 | 1.524116e-55 | 4.760734e-53 |
MsaG007525 | MsaG007827 | 0.810825 | 1.627900e-50 | 2.836515e-48 |
MsaG007546 | MsaG007827 | 0.817614 | 5.240682e-52 | 1.082980e-49 |
MsaG007827 | MsaG008062 | 0.820008 | 1.507398e-52 | 3.316033e-50 |
MsaG007827 | MsaG009004 | 0.806808 | 1.166018e-49 | 1.844359e-47 |
MsaG007827 | MsaG009447 | 0.847717 | 1.830822e-59 | 9.184068e-57 |
MsaG007827 | MsaG010148 | 0.802021 | 1.147203e-48 | 1.623619e-46 |
MsaG007827 | MsaG011563 | 0.817151 | 6.652845e-52 | 1.358597e-49 |
MsaG007827 | MsaG012442 | 0.815138 | 1.865210e-51 | 3.618075e-49 |
MsaG007827 | MsaG016390 | 0.801226 | 1.666592e-48 | 2.316526e-46 |
MsaG007827 | MsaG016483 | 0.801675 | 1.350320e-48 | 1.896151e-46 |
MsaG007827 | MsaG016578 | 0.824147 | 1.672483e-53 | 4.110225e-51 |
MsaG007827 | MsaG016706 | 0.825553 | 7.819891e-54 | 1.997285e-51 |
MsaG007827 | MsaG018234 | 0.802055 | 1.128707e-48 | 1.598741e-46 |
MsaG007827 | MsaG020206 | 0.804673 | 3.257802e-49 | 4.901603e-47 |
MsaG007827 | MsaG020335 | 0.814462 | 2.628967e-51 | 5.013581e-49 |
MsaG007827 | MsaG021001 | 0.825644 | 7.443435e-54 | 1.905866e-51 |
MsaG007827 | MsaG022554 | 0.820267 | 1.315601e-52 | 2.914137e-50 |
MsaG007827 | MsaG023662 | 0.859290 | 8.980414e-63 | 6.797104e-60 |
MsaG007827 | MsaG024888 | 0.823473 | 2.401625e-53 | 5.795236e-51 |
MsaG007827 | MsaG025864 | 0.830842 | 4.210991e-55 | 1.248420e-52 |
MsaG007827 | MsaG026756 | 0.802545 | 8.960379e-49 | 1.283495e-46 |
MsaG007827 | MsaG026770 | 0.808619 | 4.827311e-50 | 7.973595e-48 |
MsaG007827 | MsaG027255 | 0.812951 | 5.635434e-51 | 1.034771e-48 |
MsaG007827 | MsaG027495 | 0.829512 | 8.864074e-55 | 2.529748e-52 |
MsaG007827 | MsaG027969 | 0.831590 | 2.763201e-55 | 8.371939e-53 |
MsaG007827 | MsaG028188 | 0.806673 | 1.244535e-49 | 1.962374e-47 |
MsaG007827 | MsaG028553 | 0.824490 | 1.389825e-53 | 3.447788e-51 |
MsaG007827 | MsaG028704 | 0.805931 | 1.780652e-49 | 2.758835e-47 |
MsaG007827 | MsaG029074 | 0.820227 | 1.343248e-52 | 2.972295e-50 |
MsaG007827 | MsaG029128 | 0.807496 | 8.348560e-50 | 1.342288e-47 |
MsaG007827 | MsaG029162 | 0.829494 | 8.954266e-55 | 2.554183e-52 |
MsaG007827 | MsaG029702 | 0.835065 | 3.798267e-56 | 1.274768e-53 |
MsaG007827 | MsaG029892 | 0.827634 | 2.506989e-54 | 6.785634e-52 |
MsaG007827 | MsaG029946 | 0.826154 | 5.638158e-54 | 1.464389e-51 |
MsaG007827 | MsaG031612 | 0.801364 | 1.562147e-48 | 2.178192e-46 |
MsaG007827 | MsaG031586 | 0.810696 | 1.735532e-50 | 3.014457e-48 |
MsaG007827 | MsaG034350 | 0.810086 | 2.346745e-50 | 4.016003e-48 |
MsaG007827 | MsaG034529 | 0.833816 | 7.792573e-56 | 2.519556e-53 |
MsaG007827 | MsaG034763 | 0.803020 | 7.156145e-49 | 1.036277e-46 |
MsaG007827 | MsaG035300 | 0.826763 | 4.043717e-54 | 1.068137e-51 |
MsaG007827 | MsaG036485 | 0.819544 | 1.922042e-52 | 4.176379e-50 |
MsaG007827 | MsaG036511 | 0.832729 | 1.449594e-55 | 4.539878e-53 |
MsaG007827 | MsaG039176 | 0.805741 | 1.951583e-49 | 3.010187e-47 |
MsaG007827 | MsaG040390 | 0.841211 | 1.010745e-57 | 4.099001e-55 |
MsaG007827 | MsaG040443 | 0.804412 | 3.690549e-49 | 5.519332e-47 |
MsaG007827 | MsaG041117 | 0.806865 | 1.134066e-49 | 1.796227e-47 |
MsaG007827 | MsaG042856 | 0.801409 | 1.529802e-48 | 2.135265e-46 |
MsaG007827 | MsaG043624 | 0.816422 | 9.680758e-52 | 1.940092e-49 |
MsaG007827 | MsaG043767 | 0.824194 | 1.630003e-53 | 4.011061e-51 |
MsaG007827 | MsaG043845 | 0.826821 | 3.918169e-54 | 1.036635e-51 |
MsaG007827 | MsaG043846 | 0.830659 | 4.668856e-55 | 1.376826e-52 |
MsaG007827 | MsaG043998 | 0.807906 | 6.837804e-50 | 1.110289e-47 |
MsaG007827 | MsaG044317 | 0.806208 | 1.557846e-49 | 2.429653e-47 |
MsaG007827 | MsaG044707 | 0.829944 | 6.967034e-55 | 2.013122e-52 |
MsaG007827 | MsaG044807 | 0.814151 | 3.077012e-51 | 5.822357e-49 |
MsaG007827 | MsaG045111 | 0.827331 | 2.962140e-54 | 7.949719e-52 |
MsaG007827 | MsaG045261 | 0.808510 | 5.090732e-50 | 8.386815e-48 |
MsaG007827 | MsaG045332 | 0.836721 | 1.451066e-56 | 5.118126e-54 |
MsaG007827 | MsaG045582 | 0.821929 | 5.469466e-53 | 1.266002e-50 |
MsaG007827 | MsaG045595 | 0.817270 | 6.257703e-52 | 1.281843e-49 |
MsaG007827 | MsaG045883 | 0.803715 | 5.145195e-49 | 7.571503e-47 |
MsaG007827 | MsaG046223 | 0.802859 | 7.722897e-49 | 1.114187e-46 |
MsaG007827 | MsaG046181 | 0.810910 | 1.561322e-50 | 2.726065e-48 |
MsaG007827 | MsaG046532 | 0.809127 | 3.762387e-50 | 6.291293e-48 |
MsaG007827 | MsaG046492 | 0.804940 | 2.866946e-49 | 4.340378e-47 |
MsaG007827 | MsaG001553 | 0.819368 | 2.107113e-52 | 4.557774e-50 |
MsaG007827 | MsaG008213 | 0.802273 | 1.018867e-48 | 1.450340e-46 |
MsaG007827 | MsaG014174 | 0.833380 | 9.998407e-56 | 3.191680e-53 |
MsaG007827 | MsaG028085 | 0.827943 | 2.114450e-54 | 5.773057e-52 |
MsaG007827 | MsaG027837 | 0.824771 | 1.194190e-53 | 2.985198e-51 |
MsaG007827 | MsaG032588 | 0.815455 | 1.587222e-51 | 3.103754e-49 |
MsaG007827 | MsaG032019 | 0.805577 | 2.111297e-49 | 3.244011e-47 |
MsaG007827 | MsaG032681 | 0.833215 | 1.098500e-55 | 3.489973e-53 |
MsaG007827 | MsaG034268 | 0.810367 | 2.043109e-50 | 3.520444e-48 |
MsaG007827 | MsaG034182 | 0.800413 | 2.438278e-48 | 3.327660e-46 |
MsaG007827 | MsaG032969 | 0.843157 | 3.105118e-58 | 1.339979e-55 |
MsaG007827 | MsaG033510 | 0.842448 | 4.782643e-58 | 2.017711e-55 |
MsaG007827 | MsaG031297 | 0.809989 | 2.462728e-50 | 4.204444e-48 |
MsaG007827 | MsaG036566 | 0.807873 | 6.949394e-50 | 1.127498e-47 |
MsaG007827 | MsaG037652 | 0.810106 | 2.323839e-50 | 3.978739e-48 |
MsaG007827 | MsaG035309 | 0.803038 | 7.093566e-49 | 1.027660e-46 |
MsaG007827 | MsaG042308 | 0.810158 | 2.264579e-50 | 3.882145e-48 |
MsaG007827 | MsaG042389 | 0.811429 | 1.205830e-50 | 2.132377e-48 |
MsaG007827 | MsaG041547 | 0.834755 | 4.542400e-56 | 1.510501e-53 |
MsaG007827 | MsaG043778 | 0.802732 | 8.199206e-49 | 1.179477e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007827 | MtrunA17_Chr2g0296251 | 70.915 | 306 | 85 | 2 | 1 | 304 | 1 | 304 | 1.25e-146 | 419 |
MsaG007827 | MtrunA17_Chr2g0296291 | 69.000 | 300 | 89 | 2 | 1 | 297 | 1 | 299 | 2.03e-144 | 414 |
MsaG007827 | MtrunA17_Chr2g0296711 | 60.674 | 267 | 68 | 2 | 30 | 294 | 53 | 284 | 1.02e-103 | 310 |
MsaG007827 | MtrunA17_Chr2g0296231 | 58.065 | 279 | 72 | 4 | 21 | 294 | 42 | 280 | 2.23e-98 | 296 |
MsaG007827 | MtrunA17_Chr2g0296181 | 58.273 | 278 | 78 | 3 | 22 | 297 | 43 | 284 | 6.09e-98 | 295 |
MsaG007827 | MtrunA17_Chr2g0296221 | 55.749 | 287 | 84 | 4 | 21 | 299 | 66 | 317 | 7.26e-98 | 296 |
MsaG007827 | MtrunA17_Chr2g0296191 | 55.749 | 287 | 84 | 4 | 21 | 299 | 649 | 900 | 2.21e-92 | 296 |
MsaG007827 | MtrunA17_Chr2g0296191 | 52.364 | 275 | 93 | 2 | 25 | 299 | 177 | 413 | 5.23e-82 | 268 |
MsaG007827 | MtrunA17_Chr2g0296171 | 54.545 | 286 | 83 | 4 | 21 | 294 | 43 | 293 | 7.81e-92 | 280 |
MsaG007827 | MtrunA17_Chr2g0315731 | 54.412 | 272 | 87 | 2 | 25 | 294 | 65 | 301 | 1.20e-87 | 269 |
MsaG007827 | MtrunA17_Chr2g0296721 | 54.074 | 270 | 86 | 3 | 27 | 294 | 47 | 280 | 8.25e-86 | 264 |
MsaG007827 | MtrunA17_Chr2g0296301 | 48.161 | 299 | 109 | 6 | 1 | 291 | 1 | 261 | 2.13e-84 | 260 |
MsaG007827 | MtrunA17_Chr2g0296741 | 50.741 | 270 | 96 | 4 | 27 | 294 | 67 | 301 | 7.80e-79 | 246 |
MsaG007827 | MtrunA17_Chr2g0296151 | 42.086 | 278 | 121 | 3 | 19 | 294 | 29 | 268 | 6.86e-71 | 225 |
MsaG007827 | MtrunA17_Chr2g0296561 | 71.429 | 154 | 34 | 2 | 1 | 146 | 1 | 152 | 5.56e-70 | 214 |
MsaG007827 | MtrunA17_Chr2g0296121 | 41.667 | 288 | 126 | 4 | 19 | 304 | 115 | 362 | 3.16e-68 | 220 |
MsaG007827 | MtrunA17_Chr4g0067121 | 41.328 | 271 | 120 | 3 | 25 | 294 | 46 | 278 | 6.40e-68 | 218 |
MsaG007827 | MtrunA17_Chr2g0296111 | 43.011 | 279 | 117 | 4 | 20 | 294 | 29 | 269 | 8.27e-67 | 214 |
MsaG007827 | MtrunA17_Chr2g0295731 | 40.942 | 276 | 121 | 5 | 22 | 294 | 39 | 275 | 4.92e-65 | 209 |
MsaG007827 | MtrunA17_Chr2g0295741 | 40.625 | 288 | 131 | 3 | 9 | 294 | 25 | 274 | 3.88e-64 | 207 |
MsaG007827 | MtrunA17_Chr4g0067671 | 39.716 | 282 | 130 | 3 | 24 | 305 | 38 | 279 | 4.90e-59 | 193 |
MsaG007827 | MtrunA17_Chr2g0295761 | 40.809 | 272 | 122 | 5 | 24 | 294 | 54 | 287 | 2.60e-55 | 185 |
MsaG007827 | MtrunA17_Chr4g0067141 | 39.163 | 263 | 122 | 2 | 32 | 294 | 46 | 270 | 2.79e-52 | 176 |
MsaG007827 | MtrunA17_Chr2g0286191 | 37.729 | 273 | 119 | 6 | 29 | 294 | 30 | 258 | 3.45e-49 | 168 |
MsaG007827 | MtrunA17_Chr2g0296551 | 79.268 | 82 | 17 | 0 | 213 | 294 | 1 | 82 | 1.16e-39 | 138 |
MsaG007827 | MtrunA17_Chr2g0295711 | 41.618 | 173 | 64 | 3 | 21 | 191 | 37 | 174 | 7.22e-36 | 129 |
MsaG007827 | MtrunA17_Chr4g0001831 | 30.877 | 285 | 154 | 7 | 32 | 312 | 39 | 284 | 1.19e-33 | 127 |
MsaG007827 | MtrunA17_Chr2g0295751 | 40.000 | 175 | 68 | 2 | 19 | 191 | 36 | 175 | 1.92e-31 | 123 |
MsaG007827 | MtrunA17_Chr2g0296211 | 60.714 | 84 | 31 | 1 | 226 | 309 | 188 | 269 | 4.00e-24 | 101 |
MsaG007827 | MtrunA17_Chr2g0296701 | 75.472 | 53 | 13 | 0 | 242 | 294 | 2 | 54 | 9.75e-20 | 85.1 |
MsaG007827 | MtrunA17_Chr2g0296701 | 84.211 | 38 | 6 | 0 | 293 | 330 | 139 | 176 | 1.71e-13 | 67.8 |
MsaG007827 | MtrunA17_Chr8g0377781 | 26.953 | 256 | 145 | 5 | 61 | 314 | 74 | 289 | 1.28e-16 | 80.1 |
MsaG007827 | MtrunA17_Chr8g0377801 | 25.581 | 258 | 150 | 5 | 59 | 314 | 85 | 302 | 6.79e-16 | 77.8 |
MsaG007827 | MtrunA17_Chr2g0295721 | 58.929 | 56 | 23 | 0 | 239 | 294 | 1 | 56 | 3.99e-15 | 70.9 |
MsaG007827 | MtrunA17_Chr2g0296161 | 49.180 | 61 | 31 | 0 | 239 | 299 | 1 | 61 | 3.90e-13 | 66.6 |
MsaG007827 | MtrunA17_Chr2g0296131 | 54.386 | 57 | 26 | 0 | 238 | 294 | 4 | 60 | 2.39e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG007827 | AT5G07900.1 | 26.821 | 302 | 170 | 6 | 23 | 311 | 51 | 314 | 7.52e-34 | 129 |
MsaG007827 | AT1G21150.1 | 30.153 | 262 | 146 | 2 | 32 | 291 | 57 | 283 | 2.83e-30 | 119 |
MsaG007827 | AT1G21150.3 | 29.811 | 265 | 149 | 2 | 29 | 291 | 18 | 247 | 5.63e-30 | 117 |
MsaG007827 | AT1G21150.2 | 30.153 | 262 | 146 | 2 | 32 | 291 | 121 | 347 | 6.61e-30 | 119 |
MsaG007827 | AT3G46950.1 | 28.402 | 338 | 182 | 11 | 6 | 329 | 26 | 317 | 4.25e-26 | 108 |
MsaG007827 | AT1G62120.1 | 27.820 | 266 | 155 | 3 | 30 | 294 | 55 | 284 | 7.93e-24 | 101 |
MsaG007827 | AT1G61960.1 | 28.302 | 265 | 150 | 4 | 32 | 294 | 53 | 279 | 2.19e-23 | 100 |
MsaG007827 | AT1G62110.1 | 25.965 | 285 | 163 | 5 | 32 | 311 | 53 | 294 | 1.09e-22 | 98.6 |
MsaG007827 | AT1G61990.2 | 27.055 | 292 | 163 | 4 | 8 | 294 | 25 | 271 | 2.10e-22 | 97.4 |
MsaG007827 | AT1G61990.1 | 27.055 | 292 | 163 | 4 | 8 | 294 | 25 | 271 | 2.10e-22 | 97.4 |
MsaG007827 | AT1G62150.1 | 26.136 | 264 | 158 | 3 | 32 | 294 | 59 | 286 | 2.19e-22 | 97.8 |
MsaG007827 | AT1G62085.1 | 27.273 | 264 | 155 | 4 | 32 | 294 | 56 | 283 | 2.62e-22 | 97.4 |
MsaG007827 | AT1G62085.2 | 27.273 | 264 | 155 | 4 | 32 | 294 | 56 | 283 | 2.62e-22 | 97.4 |
MsaG007827 | AT1G61980.3 | 27.820 | 266 | 149 | 5 | 32 | 294 | 53 | 278 | 5.29e-22 | 96.3 |
MsaG007827 | AT1G61980.2 | 27.820 | 266 | 149 | 5 | 32 | 294 | 53 | 278 | 5.29e-22 | 96.3 |
MsaG007827 | AT1G61980.1 | 27.820 | 266 | 149 | 5 | 32 | 294 | 53 | 278 | 5.29e-22 | 96.3 |
MsaG007827 | AT1G61970.2 | 27.817 | 284 | 157 | 9 | 32 | 311 | 53 | 292 | 2.29e-20 | 91.7 |
MsaG007827 | AT1G61970.7 | 27.817 | 284 | 157 | 9 | 32 | 311 | 53 | 292 | 2.29e-20 | 91.7 |
MsaG007827 | AT1G61970.6 | 27.817 | 284 | 157 | 9 | 32 | 311 | 53 | 292 | 2.29e-20 | 91.7 |
MsaG007827 | AT1G61970.3 | 27.817 | 284 | 157 | 9 | 32 | 311 | 53 | 292 | 2.29e-20 | 91.7 |
MsaG007827 | AT1G61970.5 | 27.817 | 284 | 157 | 9 | 32 | 311 | 53 | 292 | 2.29e-20 | 91.7 |
MsaG007827 | AT1G61970.4 | 27.817 | 284 | 157 | 9 | 32 | 311 | 53 | 292 | 2.29e-20 | 91.7 |
MsaG007827 | AT1G61970.1 | 27.817 | 284 | 157 | 9 | 32 | 311 | 53 | 292 | 2.29e-20 | 91.7 |
MsaG007827 | AT5G23930.1 | 26.791 | 321 | 163 | 9 | 32 | 326 | 56 | 330 | 1.12e-16 | 80.9 |
MsaG007827 | AT5G64950.1 | 21.695 | 295 | 189 | 4 | 24 | 314 | 32 | 288 | 8.71e-13 | 68.9 |
MsaG007827 | AT1G62010.1 | 25.000 | 256 | 146 | 4 | 64 | 318 | 71 | 281 | 2.86e-11 | 64.7 |
Find 57 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTCAAGGCCATCTATATT+TGG | 0.148576 | 2:+23337188 | MsaT007827.1:CDS |
ATCAGTTTGATGACTGATTT+TGG | 0.150667 | 2:+23337134 | MsaT007827.1:CDS |
GATCCGTCATTGACTACTTT+TGG | 0.212291 | 2:+23337260 | MsaT007827.1:CDS |
TGGAGGAAGTAAAGAGTTTA+GGG | 0.240494 | 2:+23337234 | MsaT007827.1:CDS |
GACATTGTCCGCATGGTTAA+AGG | 0.256602 | 2:+23336849 | MsaT007827.1:CDS |
TTTATCTGTCGTAATGCTTT+TGG | 0.259818 | 2:+23336519 | MsaT007827.1:CDS |
TTGGAGGAAGTAAAGAGTTT+AGG | 0.267899 | 2:+23337233 | MsaT007827.1:CDS |
GAAGCTTTGCGTGCGGATTC+AGG | 0.269165 | 2:-23336639 | None:intergenic |
AAACCGTTATTCGAGTATTT+AGG | 0.278181 | 2:+23337369 | MsaT007827.1:CDS |
AACTGATTTGATTAAATCAT+TGG | 0.289242 | 2:+23337214 | MsaT007827.1:CDS |
ATTTGATGTCTTTAAGAAAT+GGG | 0.334222 | 2:+23337334 | MsaT007827.1:CDS |
GAAGAAGTTGATAACTGATT+CGG | 0.343473 | 2:-23336694 | None:intergenic |
TCCTACCTCGTCGACAAATT+CGG | 0.356172 | 2:+23336609 | MsaT007827.1:CDS |
AATTTGATGTCTTTAAGAAA+TGG | 0.359065 | 2:+23337333 | MsaT007827.1:CDS |
AAGCTAATGTGTAAAATTCC+AGG | 0.363279 | 2:-23336981 | None:intergenic |
GTCAGATTCAGAAGCACCTT+TGG | 0.364937 | 2:-23336829 | None:intergenic |
AGATCAAAATCTTATACATT+TGG | 0.374741 | 2:-23337738 | None:intergenic |
AAGAAGTTGATAACTGATTC+GGG | 0.391290 | 2:-23336693 | None:intergenic |
ATCAGAAGAAGAAGCACCTT+TGG | 0.395286 | 2:-23336934 | None:intergenic |
TCAGTTGAACCAAATATAGA+TGG | 0.441181 | 2:-23337197 | None:intergenic |
TCAAAATCTTATACATTTGG+TGG | 0.453156 | 2:-23337735 | None:intergenic |
ACATACGCAATATCATCAAA+AGG | 0.472800 | 2:+23336742 | MsaT007827.1:CDS |
CAAATACAACGGAGAACAAT+GGG | 0.473276 | 2:+23337705 | MsaT007827.1:CDS |
AATATCATCAAAAGGGTACC+AGG | 0.494005 | 2:+23336750 | MsaT007827.1:CDS |
TACTCGAATAACGGTTTCAT+CGG | 0.500961 | 2:-23337363 | None:intergenic |
TTTGATGTCTTTAAGAAATG+GGG | 0.510130 | 2:+23337335 | MsaT007827.1:CDS |
AGCTTAATTGCAAGAACTGA+GGG | 0.512098 | 2:-23336875 | None:intergenic |
ATACCTAAATACTCGAATAA+CGG | 0.521907 | 2:-23337372 | None:intergenic |
AGCTAATGTGTAAAATTCCA+GGG | 0.541017 | 2:-23336980 | None:intergenic |
TTATCTGTTGAAGCTATATG+AGG | 0.544556 | 2:+23337667 | MsaT007827.1:CDS |
GTGAAGTGGTAGTAGTGGTA+AGG | 0.547397 | 2:-23336572 | None:intergenic |
CATACGCAATATCATCAAAA+GGG | 0.549145 | 2:+23336743 | MsaT007827.1:CDS |
AACTGATATTAGCCACCGTA+AGG | 0.557576 | 2:-23337118 | None:intergenic |
TCGCTAATTTGCTTCACTCA+AGG | 0.562969 | 2:+23337174 | MsaT007827.1:CDS |
TTTCAGCTTTAAGGAGGAGT+CGG | 0.563069 | 2:+23337643 | MsaT007827.1:intron |
TGATTTGATTAAATCATTGG+AGG | 0.568194 | 2:+23337217 | MsaT007827.1:CDS |
CTCTTTGGAAGCTTTGCGTG+CGG | 0.569628 | 2:-23336646 | None:intergenic |
GCAAATACAACGGAGAACAA+TGG | 0.572984 | 2:+23337704 | MsaT007827.1:CDS |
TGAATCTGACATTGTCCGCA+TGG | 0.573592 | 2:+23336842 | MsaT007827.1:CDS |
GCTGCTTTGAAAGCCAAGAA+AGG | 0.575078 | 2:+23337284 | MsaT007827.1:CDS |
TAATCGTCAGCGCCTTACGG+TGG | 0.584026 | 2:+23337106 | MsaT007827.1:CDS |
GTATTGCAGGAAAGAATCCC+TGG | 0.593025 | 2:-23336768 | None:intergenic |
CGAGGTAGGACACAGCGAAA+GGG | 0.593390 | 2:-23336596 | None:intergenic |
TCCGAATTTGTCGACGAGGT+AGG | 0.594044 | 2:-23336610 | None:intergenic |
AAGCTTAATTGCAAGAACTG+AGG | 0.598624 | 2:-23336876 | None:intergenic |
ACGAGGTAGGACACAGCGAA+AGG | 0.604629 | 2:-23336597 | None:intergenic |
ATGTCTTTAAGAAATGGGGT+TGG | 0.618819 | 2:+23337339 | MsaT007827.1:CDS |
AGGGTGTGAAGTGGTAGTAG+TGG | 0.620465 | 2:-23336577 | None:intergenic |
GCCCCAAAAGTAGTCAATGA+CGG | 0.622060 | 2:-23337263 | None:intergenic |
TCATTGTTAACTGCAAACCC+TGG | 0.624716 | 2:+23336963 | MsaT007827.1:CDS |
CACAGCGAAAGGGTGTGAAG+TGG | 0.647943 | 2:-23336586 | None:intergenic |
ATGTCGAATTAAGCAAACAA+TGG | 0.648992 | 2:-23337066 | None:intergenic |
AATGAAACTTGCAAATACAA+CGG | 0.655557 | 2:+23337694 | MsaT007827.1:CDS |
AAGGTTCTTTAAAACTGACA+AGG | 0.658226 | 2:+23337040 | MsaT007827.1:CDS |
ATATCATCAAAAGGGTACCA+GGG | 0.689286 | 2:+23336751 | MsaT007827.1:CDS |
AGTATCCGAATTTGTCGACG+AGG | 0.717242 | 2:-23336614 | None:intergenic |
GAGGGTTACCTTTAACCATG+CGG | 0.736609 | 2:-23336857 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 23336507 | 23337757 | 23336507 | ID=MsaG007827 |
Chr2 | mRNA | 23336507 | 23337757 | 23336507 | ID=MsaT007827.1;Parent=MsaG007827 |
Chr2 | exon | 23336507 | 23337390 | 23336507 | ID=MsaT007827.1.exon1;Parent=MsaT007827.1 |
Chr2 | CDS | 23336507 | 23337390 | 23336507 | ID=cds.MsaT007827.1;Parent=MsaT007827.1 |
Chr2 | exon | 23337649 | 23337757 | 23337649 | ID=MsaT007827.1.exon2;Parent=MsaT007827.1 |
Chr2 | CDS | 23337649 | 23337757 | 23337649 | ID=cds.MsaT007827.1;Parent=MsaT007827.1 |
Gene Sequence |
Protein sequence |