AlfalfaGEDB | MsaG007835

M. sativa ssp. caerulea / MsaG007835

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007835	XP_003594864.1	90.909	132	12	0	1	132	1	132	1.80e-71	221

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007835	sp\|Q9FJK3\|AGL80_ARATH	44.444	117	65	0	1	117	1	117	1.54e-26	103

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007835	tr\|G7IND2\|G7IND2_MEDTR	90.909	132	12	0	1	132	1	132	8.61e-72	221

TFs/TRs:

Gene ID	Type	Classification
MsaG007835	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007835	MtrunA17_Chr2g0296861	90.909	132	12	0	1	132	1	132	1.66e-75	221
MsaG007835	MtrunA17_Chr3g0107461	52.344	128	61	0	1	128	1	128	1.16e-41	135
MsaG007835	MtrunA17_Chr3g0107381	50.000	128	63	1	1	127	1	128	3.38e-39	131
MsaG007835	MtrunA17_Chr4g0014321	38.095	126	78	0	1	126	1	126	4.82e-32	113
MsaG007835	MtrunA17_Chr3g0110131	44.615	130	72	0	1	130	1	130	1.96e-30	109
MsaG007835	MtrunA17_Chr3g0107331	50.000	100	50	0	4	103	3	102	2.43e-30	107
MsaG007835	MtrunA17_Chr3g0105791	49.000	100	51	0	30	129	2	101	2.67e-30	106
MsaG007835	MtrunA17_Chr4g0031421	48.000	100	52	0	30	129	2	101	2.27e-29	103
MsaG007835	MtrunA17_Chr4g0013041	37.209	129	79	1	1	129	1	127	1.37e-28	103
MsaG007835	MtrunA17_Chr2g0283941	38.519	135	80	1	1	132	1	135	7.34e-27	100
MsaG007835	MtrunA17_Chr3g0107361	45.918	98	53	0	6	103	5	102	8.27e-27	97.8
MsaG007835	MtrunA17_Chr4g0014031	38.710	124	76	0	1	124	1	124	7.49e-26	97.1
MsaG007835	MtrunA17_Chr5g0432691	36.290	124	79	0	1	124	1	124	7.80e-26	95.5
MsaG007835	MtrunA17_Chr5g0420351	38.462	117	71	1	1	117	1	116	2.35e-25	94.0
MsaG007835	MtrunA17_Chr3g0107351	43.878	98	55	0	6	103	5	102	5.33e-25	93.2
MsaG007835	MtrunA17_Chr1g0197461	33.600	125	82	1	6	130	5	128	2.18e-24	91.7
MsaG007835	MtrunA17_Chr8g0351751	38.931	131	78	1	1	129	1	131	2.75e-24	93.6
MsaG007835	MtrunA17_Chr2g0296831	36.752	117	74	0	1	117	1	117	8.98e-24	89.0
MsaG007835	MtrunA17_Chr3g0107341	41.837	98	57	0	6	103	5	102	3.83e-23	88.6
MsaG007835	MtrunA17_Chr1g0188681	36.842	114	71	1	1	114	1	113	1.35e-22	87.0
MsaG007835	MtrunA17_Chr1g0197261	35.088	114	73	1	1	114	1	113	1.98e-21	84.0
MsaG007835	MtrunA17_Chr1g0197321	36.190	105	66	1	1	105	1	104	4.21e-21	83.2
MsaG007835	MtrunA17_Chr4g0014121	36.290	124	79	0	1	124	29	152	5.62e-21	83.6
MsaG007835	MtrunA17_Chr3g0106421	40.816	98	58	0	30	127	2	99	1.30e-20	83.2
MsaG007835	MtrunA17_Chr3g0106501	42.857	98	56	0	30	127	2	99	5.31e-20	80.1
MsaG007835	MtrunA17_Chr4g0014131	36.290	124	79	0	1	124	1	124	3.06e-19	80.1
MsaG007835	MtrunA17_Chr1g0193311	38.462	117	71	1	1	117	1	116	1.10e-17	74.3
MsaG007835	MtrunA17_Chr4g0012761	35.115	131	82	3	1	130	1	129	1.62e-16	71.2
MsaG007835	MtrunA17_Chr7g0218151	31.538	130	88	1	1	130	1	129	5.12e-16	70.1
MsaG007835	MtrunA17_Chr1g0188651	38.261	115	68	2	1	113	1	114	2.35e-15	68.2
MsaG007835	MtrunA17_Chr1g0188661	32.456	114	76	1	1	114	1	113	8.60e-15	67.0
MsaG007835	MtrunA17_Chr4g0008701	28.814	118	80	1	11	128	14	127	1.65e-11	60.1
MsaG007835	MtrunA17_Chr7g0267601	27.273	121	78	2	11	128	14	127	2.57e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007835	AT3G05860.2	41.803	122	67	1	1	118	1	122	6.75e-28	102
MsaG007835	AT5G48670.1	44.444	117	65	0	1	117	1	117	1.57e-27	103
MsaG007835	AT3G05860.3	41.803	122	67	1	1	118	1	122	2.72e-27	101
MsaG007835	AT3G05860.1	41.803	122	67	1	1	118	1	122	3.29e-27	101
MsaG007835	AT1G65330.1	42.857	112	64	0	6	117	5	116	1.38e-26	100
MsaG007835	AT1G65300.1	39.286	112	68	0	6	117	5	116	2.23e-25	97.4
MsaG007835	AT5G27810.1	43.182	88	50	0	30	117	2	89	4.20e-23	87.4
MsaG007835	AT1G22590.2	36.111	108	69	0	11	118	11	118	2.36e-21	84.3
MsaG007835	AT1G31640.1	40.187	107	63	1	11	117	10	115	6.77e-21	87.4
MsaG007835	AT1G31630.1	35.714	112	71	1	6	117	5	115	2.89e-20	84.7
MsaG007835	AT5G27960.1	39.394	99	60	0	4	102	2	100	1.99e-19	82.4
MsaG007835	AT5G26650.1	39.394	99	60	0	4	102	2	100	2.16e-19	82.4
MsaG007835	AT2G28700.1	33.607	122	77	1	1	118	1	122	5.97e-19	80.9
MsaG007835	AT2G40210.1	32.479	117	79	0	1	117	1	117	4.24e-15	70.9
MsaG007835	AT5G06500.1	28.182	110	75	1	1	110	1	106	2.25e-13	65.1
MsaG007835	AT5G26580.1	34.314	102	53	3	1	102	1	88	9.64e-13	63.9

Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCTCTTTCGATTTCATTA+TGG	0.221424	2:-23412934	None:intergenic
ATTCATACGGGTGAATTTGA+TGG	0.333961	2:+23413017	MsaT007835.1:CDS
AGATGGTGTTGGACAAGTTT+AGG	0.350542	2:+23412850	MsaT007835.1:CDS
GTTTAGGAGCTTTCCTGAAT+CGG	0.417309	2:+23412866	MsaT007835.1:CDS
TAAACTTGTCCAACACCATC+TGG	0.418271	2:-23412848	None:intergenic
AGTGAAATCACCACACTTTG+TGG	0.451943	2:+23412753	MsaT007835.1:CDS
GGAAGACAACATTCAACAAA+AGG	0.464060	2:+23412289	MsaT007835.1:CDS
ATCTATGATGAAAACAATGA+TGG	0.489972	2:+23412795	MsaT007835.1:CDS
ACTTGGTGAATTCATTCATA+CGG	0.496749	2:+23413004	MsaT007835.1:CDS
AGAGAAGTTGAAGAAACAAA+AGG	0.500916	2:+23412950	MsaT007835.1:CDS
CCTGAATCGGAACAAAGAAA+AGG	0.516491	2:+23412879	MsaT007835.1:CDS
GGAACAAAGAAAAGGAAAGC+TGG	0.520124	2:+23412887	MsaT007835.1:CDS
AGTTGAAGAAACAAAAGGAC+AGG	0.532305	2:+23412955	MsaT007835.1:CDS
AAAAGGAAAGCTGGATCATG+AGG	0.532487	2:+23412896	MsaT007835.1:CDS
CTTGGTGAATTCATTCATAC+GGG	0.535817	2:+23413005	MsaT007835.1:CDS
AAGAAAATGAATGATCTACT+TGG	0.551967	2:+23412987	MsaT007835.1:CDS
ACGGTTTATCCATCAAAAGA+AGG	0.566324	2:+23412822	MsaT007835.1:CDS
ACATAACTGATGACTTGAAG+AGG	0.573872	2:+23412268	MsaT007835.1:CDS
AGAAGGAGTCCAGATGGTGT+TGG	0.590630	2:+23412839	MsaT007835.1:CDS
ATCAAAAGAAGGAGTCCAGA+TGG	0.615817	2:+23412833	MsaT007835.1:CDS
TGCATCAATTCCACAAAGTG+TGG	0.616904	2:-23412763	None:intergenic
TGAAAACAATGATGGAGCAA+CGG	0.627126	2:+23412803	MsaT007835.1:CDS
ACATTCAACAAAAGGAAGCA+TGG	0.630577	2:+23412297	MsaT007835.1:CDS
AAAGGAAAGCTGGATCATGA+GGG	0.661580	2:+23412897	MsaT007835.1:CDS
CTTTGTGGAATTGATGCATG+TGG	0.684212	2:+23412768	MsaT007835.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	23412240	23413055	23412240	ID=MsaG007835
Chr2	mRNA	23412240	23413055	23412240	ID=MsaT007835.1;Parent=MsaG007835
Chr2	exon	23412240	23412318	23412240	ID=MsaT007835.1.exon1;Parent=MsaT007835.1
Chr2	CDS	23412240	23412318	23412240	ID=cds.MsaT007835.1;Parent=MsaT007835.1
Chr2	exon	23412736	23413055	23412736	ID=MsaT007835.1.exon2;Parent=MsaT007835.1
Chr2	CDS	23412736	23413055	23412736	ID=cds.MsaT007835.1;Parent=MsaT007835.1

Gene Sequence

>MsaT007835.1

ATGGCTGATAAAAATATGAGAGTTGACTACATAACTGATGACTTGAAGAGGAAGACAACATTCAACAAAAGGAAGCATGGTATAACTAAGAAGATTAGTGAAATCACCACACTTTGTGGAATTGATGCATGTGGTATAATCTATGATGAAAACAATGATGGAGCAACGGTTTATCCATCAAAAGAAGGAGTCCAGATGGTGTTGGACAAGTTTAGGAGCTTTCCTGAATCGGAACAAAGAAAAGGAAAGCTGGATCATGAGGGCTTTTTGAGACAATCCATAATGAAATCGAAAGAGAAGTTGAAGAAACAAAAGGACAGGTCCAAGAAGAAGAAAATGAATGATCTACTTGGTGAATTCATTCATACGGGTGAATTTGATGGAAATGTGAGAGAATGA

Protein sequence

>MsaT007835.1

MADKNMRVDYITDDLKRKTTFNKRKHGITKKISEITTLCGIDACGIIYDENNDGATVYPSKEGVQMVLDKFRSFPESEQRKGKLDHEGFLRQSIMKSKEKLKKQKDRSKKKKMNDLLGEFIHTGEFDGNVRE*