AlfalfaGEDB | MsaG007884

M. sativa ssp. caerulea / MsaG007884

KEGG: -
GO: -
PFAM: PF04640.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007884	XP_039686395.1	98.712	233	3	0	1	233	26	258	8.78e-172	483

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007884	sp\|Q1G3Q4\|RITF1_ARATH	39.922	258	120	4	7	232	1	255	7.00e-54	176

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007884	tr\|A0A396J5D9\|A0A396J5D9_MEDTR	98.712	233	3	0	1	233	26	258	4.19e-172	483

TFs/TRs:

Gene ID	Type	Classification
MsaG007884	TF	PLATZ

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001441	MsaG007884	0.804014	4.462281e-49	6.612355e-47
MsaG002024	MsaG007884	0.801685	1.343582e-48	1.887155e-46
MsaG002929	MsaG007884	0.817250	6.323779e-52	1.294704e-49
MsaG003882	MsaG007884	0.806560	1.314324e-49	2.066932e-47
MsaG004154	MsaG007884	0.808974	4.056652e-50	6.758258e-48
MsaG005138	MsaG007884	0.801504	1.462964e-48	2.046379e-46
MsaG006199	MsaG007884	0.803513	5.664343e-49	8.296449e-47
MsaG007002	MsaG007884	0.869206	7.466877e-66	8.369886e-63
MsaG007580	MsaG007884	0.804123	4.235534e-49	6.292199e-47
MsaG007801	MsaG007884	0.802669	8.449500e-49	1.213767e-46
MsaG007884	MsaG007888	0.826233	5.401949e-54	1.406039e-51
MsaG007884	MsaG007889	0.825267	9.132781e-54	2.314240e-51
MsaG007884	MsaG009852	0.800445	2.402585e-48	3.281293e-46
MsaG007884	MsaG011460	0.835926	2.306258e-56	7.942395e-54
MsaG007884	MsaG013310	0.806236	1.537251e-49	2.399063e-47
MsaG007884	MsaG014062	0.826144	5.669539e-54	1.472130e-51
MsaG007884	MsaG015037	0.815137	1.865776e-51	3.619129e-49
MsaG007884	MsaG015941	0.822131	4.914288e-53	1.143673e-50
MsaG007884	MsaG018355	0.807096	1.014006e-49	1.614849e-47
MsaG007884	MsaG019225	0.804825	3.028567e-49	4.572992e-47
MsaG007884	MsaG020267	0.811148	1.387305e-50	2.436407e-48
MsaG007884	MsaG021484	0.812083	8.703201e-51	1.563913e-48
MsaG007884	MsaG021836	0.804604	3.367019e-49	5.057812e-47
MsaG007884	MsaG022048	0.800500	2.341486e-48	3.201759e-46
MsaG007884	MsaG027690	0.814441	2.657959e-51	5.066293e-49
MsaG007884	MsaG028308	0.800741	2.092035e-48	2.876321e-46
MsaG007884	MsaG028370	0.800093	2.830201e-48	3.834645e-46
MsaG007884	MsaG028961	0.801167	1.713879e-48	2.379092e-46
MsaG007884	MsaG029083	0.804228	4.030181e-49	6.001680e-47
MsaG007884	MsaG029835	0.802533	9.010237e-49	1.290293e-46
MsaG007884	MsaG031017	0.808523	5.059816e-50	8.338472e-48
MsaG007884	MsaG039397	0.809160	3.702476e-50	6.195890e-48
MsaG007884	MsaG040673	0.800413	2.438858e-48	3.328387e-46
MsaG007884	MsaG041801	0.807400	8.750013e-50	1.403568e-47
MsaG007884	MsaG042732	0.817255	6.306693e-52	1.291385e-49
MsaG007884	MsaG043499	0.816225	1.070471e-51	2.134698e-49
MsaG007884	MsaG045314	0.809684	2.861624e-50	4.849716e-48
MsaG007884	MsaG045764	0.800795	2.039338e-48	2.807347e-46
MsaG007884	MsaG046671	0.800911	1.931597e-48	2.665851e-46
MsaG007884	MsaG007209	0.811299	1.286456e-50	2.267758e-48
MsaG007884	MsaG007436	0.805281	2.434861e-49	3.715441e-47
MsaG007884	MsaG013377	0.803183	6.623901e-49	9.628363e-47
MsaG007884	MsaG018691	0.803770	5.011018e-49	7.383462e-47
MsaG007884	MsaG018508	0.817154	6.643585e-52	1.356819e-49
MsaG007884	MsaG019698	0.828892	1.251270e-54	3.508501e-52
MsaG007884	MsaG039944	0.806485	1.362862e-49	2.139488e-47
MsaG007884	MsaG040993	0.820569	1.122687e-52	2.506605e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007884	MtrunA17_Chr2g0297251	98.712	233	3	0	1	233	26	258	8.07e-176	483
MsaG007884	MtrunA17_Chr4g0065041	45.098	255	109	6	5	232	1	251	3.36e-62	195
MsaG007884	MtrunA17_Chr7g0230511	43.388	242	118	5	9	232	6	246	2.78e-58	184
MsaG007884	MtrunA17_Chr4g0040071	35.371	229	107	6	12	233	15	209	2.35e-39	135
MsaG007884	MtrunA17_Chr5g0395181	33.778	225	109	4	12	233	21	208	2.62e-38	132
MsaG007884	MtrunA17_Chr5g0411151	33.617	235	111	5	9	233	32	231	4.52e-37	130
MsaG007884	MtrunA17_Chr8g0366581	44.615	130	71	1	9	137	30	159	2.51e-36	128
MsaG007884	MtrunA17_Chr1g0179781	33.628	226	120	5	10	233	5	202	3.02e-36	127
MsaG007884	MtrunA17_Chr4g0052451	72.619	84	17	1	62	139	10	93	4.67e-36	122
MsaG007884	MtrunA17_Chr7g0265291	34.498	229	115	5	10	233	5	203	7.12e-35	123
MsaG007884	MtrunA17_Chr4g0052461	82.759	58	10	0	8	65	18	75	6.90e-32	111
MsaG007884	MtrunA17_Chr2g0320521	39.869	153	77	5	3	144	1	149	1.60e-26	102
MsaG007884	MtrunA17_Chr2g0320561	38.776	147	79	4	14	149	6	152	2.55e-25	99.8
MsaG007884	MtrunA17_Chr2g0320551	37.162	148	82	4	14	150	6	153	1.89e-23	92.8
MsaG007884	MtrunA17_Chr4g0020811	40.000	150	69	6	3	138	1	143	1.98e-23	92.4
MsaG007884	MtrunA17_Chr2g0308401	40.559	143	68	5	10	138	2	141	8.76e-23	90.5
MsaG007884	MtrunA17_Chr8g0392151	34.194	155	80	4	4	137	5	158	6.60e-21	87.8
MsaG007884	MtrunA17_Chr5g0434331	32.090	134	84	4	11	140	42	172	2.25e-15	72.4
MsaG007884	MtrunA17_Chr8g0386511	33.333	117	74	2	50	162	4	120	1.58e-14	68.6
MsaG007884	MtrunA17_Chr1g0161601	44.048	84	45	2	6	89	42	123	8.49e-14	66.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG007884	AT1G31040.1	61.905	231	75	5	11	233	18	243	2.90e-96	281
MsaG007884	AT3G60670.1	42.437	238	120	3	12	232	7	244	2.90e-57	182
MsaG007884	AT2G12646.3	40.392	255	117	4	10	232	1	252	1.23e-55	178
MsaG007884	AT2G12646.1	39.922	258	120	4	7	232	1	255	7.12e-55	176
MsaG007884	AT2G12646.2	39.922	258	120	4	7	232	1	255	7.12e-55	176
MsaG007884	AT1G43000.2	35.242	227	126	5	10	232	14	223	3.31e-37	130
MsaG007884	AT1G43000.1	35.242	227	126	5	10	232	7	216	4.04e-37	130
MsaG007884	AT1G21000.1	34.298	242	127	6	12	232	16	246	1.90e-36	129
MsaG007884	AT1G21000.2	34.298	242	127	6	12	232	13	243	2.10e-36	129
MsaG007884	AT2G01818.1	48.148	135	60	3	13	137	12	146	8.57e-35	124
MsaG007884	AT1G32700.1	45.669	127	68	1	12	137	12	138	1.86e-34	122
MsaG007884	AT4G17900.1	45.038	131	70	2	9	137	31	161	3.19e-34	122
MsaG007884	AT4G17900.2	45.038	131	70	2	9	137	17	147	7.23e-34	121
MsaG007884	AT1G76590.1	44.615	130	71	1	12	140	18	147	7.42e-34	122
MsaG007884	AT2G27930.1	44.681	141	67	3	11	140	3	143	1.61e-33	119
MsaG007884	AT2G27930.4	44.681	141	67	3	11	140	3	143	1.61e-33	119
MsaG007884	AT5G46710.2	44.286	140	76	2	5	142	21	160	1.87e-33	119
MsaG007884	AT2G27930.3	45.000	140	66	3	11	139	3	142	2.07e-33	119
MsaG007884	AT2G27930.2	45.000	140	66	3	11	139	3	142	2.07e-33	119
MsaG007884	AT5G46710.1	45.185	135	72	2	5	137	21	155	7.12e-33	119
MsaG007884	AT5G46710.3	45.802	131	69	2	9	137	9	139	1.35e-32	118
MsaG007884	AT1G32700.2	46.465	99	52	1	40	137	1	99	2.86e-25	98.2
MsaG007884	AT2G27930.5	45.455	88	39	1	62	140	59	146	8.92e-19	81.3
MsaG007884	AT2G27930.6	45.455	88	39	1	62	140	59	146	8.92e-19	81.3
MsaG007884	AT2G01818.2	49.351	77	33	2	67	137	6	82	1.33e-16	74.7

Find 62 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTGTTGGATTTGTTCTTCT+TGG	0.221070	2:-24048853	None:intergenic
TGTTGCTGGTGGCCTCTTCT+TGG	0.257102	2:-24048824	None:intergenic
TTTGCACTGTTAATAGTATA+GGG	0.310183	2:-24042352	None:intergenic
CCTGGCATTGTCCTCTCTCT+TGG	0.334179	2:+24048882	MsaT007884.1:CDS
CACTTGTGACAGGATTCTTC+AGG	0.345103	2:+24042438	MsaT007884.1:CDS
CATTGATTGTTCTAATATAC+AGG	0.353712	2:+24041876	MsaT007884.1:CDS
TTGATGGATGAAACATTCTT+TGG	0.372131	2:+24037085	MsaT007884.1:CDS
TAGGATAGTGGGGCCCTTTG+AGG	0.381993	2:-24048924	None:intergenic
CGTAATTCGATTGGATGATC+TGG	0.385003	2:+24041846	MsaT007884.1:CDS
GTAATAATGGTTTAGGATAG+TGG	0.420638	2:-24048936	None:intergenic
CGTTCTTCCTTCGATTCTTG+TGG	0.423267	2:-24037120	None:intergenic
ATAAGTGCAGGTGGATTTCA+TGG	0.424549	2:+24048644	MsaT007884.1:intron
CGATTTGATGAATCTGACTT+AGG	0.432856	2:+24048702	MsaT007884.1:CDS
GGCCTCTTCTTGGTGAGTGA+TGG	0.433860	2:-24048814	None:intergenic
TGCATGAGAGAGAACAGAAA+TGG	0.450248	2:-24042468	None:intergenic
TGCTTCTCATCCTCTTCTCC+AGG	0.455215	2:+24037204	MsaT007884.1:CDS
GAAACATTCTTTGGTGATTG+TGG	0.465089	2:+24037094	MsaT007884.1:CDS
AAACATTCTTTGGTGATTGT+GGG	0.470651	2:+24037095	MsaT007884.1:CDS
TTACAACAACGTAATTCGAT+TGG	0.478043	2:+24041837	MsaT007884.1:CDS
CCAAGAGAGAGGACAATGCC+AGG	0.479103	2:-24048882	None:intergenic
ATGCTTGCTTCACTTGTGAC+AGG	0.483376	2:+24042428	MsaT007884.1:CDS
ATCAACCTCTCTAGCCATGC+AGG	0.486614	2:-24037067	None:intergenic
GCAATTCGAGGGACTAAGAA+TGG	0.489732	2:+24048731	MsaT007884.1:CDS
GAAGAAAAGGTGCTCCTCAA+AGG	0.491867	2:+24048910	MsaT007884.1:CDS
ATCAAATCGATGTAAAATGT+TGG	0.496431	2:-24048688	None:intergenic
TCTCTTGGAAGCAGAAGAAA+AGG	0.496815	2:+24048897	MsaT007884.1:CDS
ATGGAGTAATTAGAAGAACT+TGG	0.498349	2:-24048795	None:intergenic
TTTCTGTTCTCTCTCATGCA+AGG	0.498493	2:+24042471	MsaT007884.1:CDS
TAATAATGGTTTAGGATAGT+GGG	0.503746	2:-24048935	None:intergenic
GAGAGAGAACAGAAATGGAA+TGG	0.509323	2:-24042463	None:intergenic
AGAGAGAACAGAAATGGAAT+GGG	0.519403	2:-24042462	None:intergenic
AAGAAAAGGTGCTCCTCAAA+GGG	0.524805	2:+24048911	MsaT007884.1:CDS
ACTTTGCATGACTTTGATTG+TGG	0.529762	2:-24042397	None:intergenic
CTTAGGAATATCGCAATTCG+AGG	0.531509	2:+24048719	MsaT007884.1:CDS
TTCTTCTGCTTCCAAGAGAG+AGG	0.533226	2:-24048893	None:intergenic
TGAAACCTGCATGGCTAGAG+AGG	0.557873	2:+24037062	MsaT007884.1:CDS
TTCGAGGGACTAAGAATGGA+TGG	0.559888	2:+24048735	MsaT007884.1:CDS
AGCATGAGAAGATAAGCAGT+GGG	0.561028	2:-24037185	None:intergenic
TGCATGGCTAGAGAGGTTGA+TGG	0.563271	2:+24037069	MsaT007884.1:CDS
AATGCCAGGGAGGAATCTGT+TGG	0.577735	2:-24048868	None:intergenic
CTCCATCACTCACCAAGAAG+AGG	0.578593	2:+24048812	MsaT007884.1:CDS
TAATATAATACCTGGAGAAG+AGG	0.580127	2:-24037214	None:intergenic
GTCACAAGTGAAGCAAGCAT+TGG	0.580435	2:-24042425	None:intergenic
TCATGATGCTGTAGGTGAGA+AGG	0.582777	2:+24041809	MsaT007884.1:intron
ACTAAGAATGGATGGATCTG+AGG	0.607142	2:+24048743	MsaT007884.1:CDS
AAGCATGAGAAGATAAGCAG+TGG	0.608759	2:-24037186	None:intergenic
AACATTCTTTGGTGATTGTG+GGG	0.611739	2:+24037096	MsaT007884.1:CDS
TGGAGTAATTAGAAGAACTT+GGG	0.613997	2:-24048794	None:intergenic
GTGGGGTCCACAAGAATCGA+AGG	0.615814	2:+24037113	MsaT007884.1:CDS
GATGAAGATAACAACCACAT+TGG	0.616337	2:+24048771	MsaT007884.1:CDS
CATGAGAAGATAAGCAGTGG+GGG	0.623874	2:-24037183	None:intergenic
TAGAAGAACTTGGGCCAATG+TGG	0.628681	2:-24048785	None:intergenic
AAATCCAACAGATTCCTCCC+TGG	0.630961	2:+24048864	MsaT007884.1:CDS
CAAGAGAGAGGACAATGCCA+GGG	0.632298	2:-24048881	None:intergenic
TTAGGAATATCGCAATTCGA+GGG	0.644008	2:+24048720	MsaT007884.1:CDS
GAGAGAGGACAATGCCAGGG+AGG	0.651378	2:-24048878	None:intergenic
AATAATGGTTTAGGATAGTG+GGG	0.654932	2:-24048934	None:intergenic
GGTGGATTTCATGGTATACG+AGG	0.668694	2:+24048653	MsaT007884.1:intron
ATCAAGAGGAGACATGGACA+TGG	0.680821	2:+24037021	None:intergenic
TGATGAATATGAAACCTGCA+TGG	0.699453	2:+24037053	MsaT007884.1:CDS
GTGGATTTCATGGTATACGA+GGG	0.708036	2:+24048654	MsaT007884.1:CDS
GCATGAGAAGATAAGCAGTG+GGG	0.713738	2:-24037184	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	24037034	24048947	24037034	ID=MsaG007884
Chr2	mRNA	24037034	24048947	24037034	ID=MsaT007884.1;Parent=MsaG007884
Chr2	exon	24037034	24037225	24037034	ID=MsaT007884.1.exon1;Parent=MsaT007884.1
Chr2	CDS	24037034	24037225	24037034	ID=cds.MsaT007884.1;Parent=MsaT007884.1
Chr2	exon	24041823	24041897	24041823	ID=MsaT007884.1.exon2;Parent=MsaT007884.1
Chr2	CDS	24041823	24041897	24041823	ID=cds.MsaT007884.1;Parent=MsaT007884.1
Chr2	exon	24042352	24042492	24042352	ID=MsaT007884.1.exon3;Parent=MsaT007884.1
Chr2	CDS	24042352	24042492	24042352	ID=cds.MsaT007884.1;Parent=MsaT007884.1
Chr2	exon	24048654	24048947	24048654	ID=MsaT007884.1.exon4;Parent=MsaT007884.1
Chr2	CDS	24048654	24048947	24048654	ID=cds.MsaT007884.1;Parent=MsaT007884.1

Gene Sequence

>MsaT007884.1

ATGGACATGGACATGAGTATGATGAATATGAAACCTGCATGGCTAGAGAGGTTGATGGATGAAACATTCTTTGGTGATTGTGGGGTCCACAAGAATCGAAGGAAGAACGAGAAGAACATTTTTTGCTTACACTGTTGTCTTAGCATCTGCCCCCACTGCTTATCTTCTCATGCTTCTCATCCTCTTCTCCAGGTGAGAAGGTATGTTTACAACAACGTAATTCGATTGGATGATCTGGAAAAGCTCATTGATTGTTCTAATATACAGCCCTATACTATTAACAGTGCAAAAGTGATATTTTTAAATCAGAGGCCACAATCAAAGTCATGCAAAGTTACAACCAATGCTTGCTTCACTTGTGACAGGATTCTTCAGGACCCATTCCATTTCTGTTCTCTCTCATGCAAGGTGGATTTCATGGTATACGAGGGTCAAAGTTTGTCCAACATTTTACATCGATTTGATGAATCTGACTTAGGAATATCGCAATTCGAGGGACTAAGAATGGATGGATCTGAGGTAATTGATGAAGATAACAACCACATTGGCCCAAGTTCTTCTAATTACTCCATCACTCACCAAGAAGAGGCCACCAGCAACAAAATCACCAAGAAGAACAAATCCAACAGATTCCTCCCTGGCATTGTCCTCTCTCTTGGAAGCAGAAGAAAAGGTGCTCCTCAAAGGGCCCCACTATCCTAA

Protein sequence

>MsaT007884.1

MDMDMSMMNMKPAWLERLMDETFFGDCGVHKNRRKNEKNIFCLHCCLSICPHCLSSHASHPLLQVRRYVYNNVIRLDDLEKLIDCSNIQPYTINSAKVIFLNQRPQSKSCKVTTNACFTCDRILQDPFHFCSLSCKVDFMVYEGQSLSNILHRFDESDLGISQFEGLRMDGSEVIDEDNNHIGPSSSNYSITHQEEATSNKITKKNKSNRFLPGIVLSLGSRRKGAPQRAPLS*