AlfalfaGEDB | MsaG008004

M. sativa ssp. caerulea / MsaG008004

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00628.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008004	XP_003595073.1	93.305	717	32	2	1	711	1	707	0.0	1304

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008004	sp\|P48785\|PRH_ARATH	58.118	425	158	5	136	546	97	515	1.78e-154	470

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008004	tr\|G7IG86\|G7IG86_MEDTR	93.305	717	32	2	1	711	1	707	0.0	1304

TFs/TRs:

Gene ID	Type	Classification
MsaG008004	TF	HB-PHD

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000138	MsaG008004	0.820503	1.161827e-52	2.589570e-50
MsaG000167	MsaG008004	0.801781	1.284331e-48	1.807839e-46
MsaG000260	MsaG008004	0.815624	1.455899e-51	2.859236e-49
MsaG000910	MsaG008004	0.809834	2.658058e-50	4.521143e-48
MsaG001270	MsaG008004	0.813618	4.028162e-51	7.521069e-49
MsaG001277	MsaG008004	0.844094	1.748154e-58	7.775534e-56
MsaG002146	MsaG008004	0.806886	1.122525e-49	1.778838e-47
MsaG002597	MsaG008004	0.824111	1.704428e-53	4.184866e-51
MsaG002605	MsaG008004	0.834887	4.209703e-56	1.405331e-53
MsaG002691	MsaG008004	0.835615	2.761347e-56	9.421555e-54
MsaG002692	MsaG008004	0.812142	8.452159e-51	1.521017e-48
MsaG003789	MsaG008004	0.809462	3.191788e-50	5.380530e-48
MsaG004404	MsaG008004	0.811483	1.173972e-50	2.078825e-48
MsaG004416	MsaG008004	0.813351	4.608453e-51	8.546960e-49
MsaG005203	MsaG008004	0.801968	1.176230e-48	1.662738e-46
MsaG005275	MsaG008004	0.805818	1.880339e-49	2.905573e-47
MsaG005278	MsaG008004	0.809176	3.674331e-50	6.151031e-48
MsaG006276	MsaG008004	0.812009	9.032895e-51	1.620266e-48
MsaG006284	MsaG008004	0.808106	6.203046e-50	1.012043e-47
MsaG006967	MsaG008004	0.807610	7.900816e-50	1.273716e-47
MsaG007363	MsaG008004	0.801481	1.478620e-48	2.067194e-46
MsaG007447	MsaG008004	0.810611	1.809999e-50	3.137386e-48
MsaG007397	MsaG008004	0.808802	4.414279e-50	7.323622e-48
MsaG008004	MsaG008331	0.811847	9.791720e-51	1.749450e-48
MsaG008004	MsaG009178	0.802130	1.089948e-48	1.546431e-46
MsaG008004	MsaG009739	0.828155	1.881285e-54	5.167030e-52
MsaG008004	MsaG010083	0.813511	4.251775e-51	7.917415e-49
MsaG008004	MsaG010113	0.802446	9.388222e-49	1.341748e-46
MsaG008004	MsaG010268	0.829054	1.143528e-54	3.221103e-52
MsaG008004	MsaG010767	0.804957	2.843274e-49	4.306320e-47
MsaG008004	MsaG011213	0.852357	9.328919e-61	5.487920e-58
MsaG008004	MsaG011525	0.839044	3.693262e-57	1.399335e-54
MsaG008004	MsaG011559	0.824724	1.225090e-53	3.058487e-51
MsaG008004	MsaG011690	0.843011	3.394588e-58	1.458146e-55
MsaG008004	MsaG011862	0.827664	2.466018e-54	6.680325e-52
MsaG008004	MsaG012026	0.804783	3.090330e-49	4.661609e-47
MsaG008004	MsaG012162	0.824499	1.383296e-53	3.432438e-51
MsaG008004	MsaG012396	0.806886	1.122449e-49	1.778720e-47
MsaG008004	MsaG012588	0.866989	3.829243e-65	3.920404e-62
MsaG008004	MsaG012649	0.827507	2.687874e-54	7.249310e-52
MsaG008004	MsaG012766	0.826920	3.711388e-54	9.846736e-52
MsaG008004	MsaG013173	0.814001	3.320013e-51	6.258671e-49
MsaG008004	MsaG013828	0.803485	5.739151e-49	8.400665e-47
MsaG008004	MsaG013971	0.822252	4.607371e-53	1.075734e-50
MsaG008004	MsaG014039	0.809133	3.752927e-50	6.276351e-48
MsaG008004	MsaG014145	0.801847	1.245156e-48	1.755352e-46
MsaG008004	MsaG015564	0.827494	2.707434e-54	7.299402e-52
MsaG008004	MsaG015841	0.806597	1.291493e-49	2.032784e-47
MsaG008004	MsaG016180	0.800343	2.519469e-48	3.432934e-46
MsaG008004	MsaG016503	0.801122	1.750427e-48	2.427352e-46
MsaG008004	MsaG016591	0.825320	8.872606e-54	2.251697e-51
MsaG008004	MsaG016887	0.822647	3.734111e-53	8.811625e-51
MsaG008004	MsaG017973	0.803892	4.729474e-49	6.988159e-47
MsaG008004	MsaG018252	0.809547	3.061691e-50	5.171712e-48
MsaG008004	MsaG018431	0.807569	8.056669e-50	1.297592e-47
MsaG008004	MsaG018680	0.812639	6.589463e-51	1.200582e-48
MsaG008004	MsaG019134	0.803845	4.837239e-49	7.139579e-47
MsaG008004	MsaG020491	0.809133	3.752216e-50	6.275207e-48
MsaG008004	MsaG020723	0.816387	9.852512e-52	1.972816e-49
MsaG008004	MsaG020840	0.801152	1.725757e-48	2.394761e-46
MsaG008004	MsaG021320	0.842771	3.927773e-58	1.674290e-55
MsaG008004	MsaG021433	0.829141	1.089688e-54	3.076898e-52
MsaG008004	MsaG021438	0.801483	1.477422e-48	2.065588e-46
MsaG008004	MsaG022363	0.815349	1.675176e-51	3.267043e-49
MsaG008004	MsaG022579	0.818430	3.433213e-52	7.245873e-50
MsaG008004	MsaG022609	0.803760	5.035749e-49	7.418149e-47
MsaG008004	MsaG023602	0.835984	2.229233e-56	7.690349e-54
MsaG008004	MsaG023681	0.804953	2.848927e-49	4.314482e-47
MsaG008004	MsaG023909	0.813254	4.838720e-51	8.952355e-49
MsaG008004	MsaG024829	0.812259	7.973529e-51	1.439034e-48
MsaG008004	MsaG025448	0.829389	9.493684e-55	2.699823e-52
MsaG008004	MsaG026280	0.812047	8.860881e-51	1.590883e-48
MsaG008004	MsaG027759	0.806210	1.556544e-49	2.427739e-47
MsaG008004	MsaG028159	0.810013	2.433681e-50	4.157294e-48
MsaG008004	MsaG028583	0.804825	3.029165e-49	4.573873e-47
MsaG008004	MsaG028705	0.835947	2.277185e-56	7.847337e-54
MsaG008004	MsaG029109	0.847104	2.694441e-59	1.323984e-56
MsaG008004	MsaG029167	0.824779	1.189195e-53	2.973444e-51
MsaG008004	MsaG029170	0.818362	3.556932e-52	7.493792e-50
MsaG008004	MsaG029377	0.801028	1.828899e-48	2.530793e-46
MsaG008004	MsaG029742	0.803000	7.224394e-49	1.045687e-46
MsaG008004	MsaG030106	0.801497	1.467483e-48	2.052391e-46
MsaG008004	MsaG030221	0.824027	1.783423e-53	4.368818e-51
MsaG008004	MsaG031217	0.819560	1.905540e-52	4.142321e-50
MsaG008004	MsaG031763	0.818663	3.042227e-52	6.459754e-50
MsaG008004	MsaG032340	0.823874	1.936924e-53	4.725021e-51
MsaG008004	MsaG032634	0.803731	5.105048e-49	7.515366e-47
MsaG008004	MsaG032860	0.819755	1.720518e-52	3.759318e-50
MsaG008004	MsaG033851	0.837904	7.248458e-57	2.650642e-54
MsaG008004	MsaG034105	0.837871	7.390845e-57	2.699844e-54
MsaG008004	MsaG034372	0.833422	9.764623e-56	3.121018e-53
MsaG008004	MsaG034625	0.814537	2.530732e-51	4.835310e-49
MsaG008004	MsaG034737	0.801271	1.632092e-48	2.270857e-46
MsaG008004	MsaG034839	0.805671	2.017924e-49	3.107452e-47
MsaG008004	MsaG035173	0.806395	1.423573e-49	2.230023e-47
MsaG008004	MsaG035206	0.871495	1.337596e-66	1.651577e-63
MsaG008004	MsaG036300	0.800541	2.296951e-48	3.143804e-46
MsaG008004	MsaG038999	0.829392	9.475236e-55	2.694835e-52
MsaG008004	MsaG039607	0.828983	1.189406e-54	3.343539e-52
MsaG008004	MsaG040149	0.810981	1.506876e-50	2.635617e-48
MsaG008004	MsaG040364	0.808399	5.375842e-50	8.832594e-48
MsaG008004	MsaG040748	0.824904	1.111456e-53	2.788613e-51
MsaG008004	MsaG041495	0.805732	1.959962e-49	3.022527e-47
MsaG008004	MsaG041746	0.801244	1.652769e-48	2.298226e-46
MsaG008004	MsaG041937	0.803835	4.858882e-49	7.170009e-47
MsaG008004	MsaG042162	0.806802	1.169470e-49	1.849568e-47
MsaG008004	MsaG042574	0.800720	2.112546e-48	2.903182e-46
MsaG008004	MsaG042720	0.805201	2.529949e-49	3.853513e-47
MsaG008004	MsaG042932	0.831006	3.841867e-55	1.144361e-52
MsaG008004	MsaG043729	0.822984	3.120022e-53	7.429914e-51
MsaG008004	MsaG044632	0.805886	1.819592e-49	2.816221e-47
MsaG008004	MsaG044743	0.822776	3.485436e-53	8.253919e-51
MsaG008004	MsaG044776	0.801368	1.559222e-48	2.174330e-46
MsaG008004	MsaG044869	0.800060	2.874049e-48	3.891244e-46
MsaG008004	MsaG044874	0.815065	1.936119e-51	3.748782e-49
MsaG008004	MsaG045398	0.803141	6.757409e-49	9.812754e-47
MsaG008004	MsaG045400	0.815590	1.481381e-51	2.906730e-49
MsaG008004	MsaG045667	0.813780	3.713173e-51	6.961262e-49
MsaG008004	MsaG001347	0.801960	1.180753e-48	1.668822e-46
MsaG008004	MsaG002546	0.824081	1.732154e-53	4.249401e-51
MsaG008004	MsaG008314	0.805988	1.732832e-49	2.688257e-47
MsaG008004	MsaG007527	0.800797	2.037372e-48	2.804782e-46
MsaG008004	MsaG009150	0.809695	2.845814e-50	4.824192e-48
MsaG008004	MsaG011923	0.814674	2.360602e-51	4.525876e-49
MsaG008004	MsaG022818	0.814386	2.732708e-51	5.201596e-49
MsaG008004	MsaG018949	0.803138	6.768272e-49	9.827846e-47
MsaG008004	MsaG020201	0.806934	1.097003e-49	1.740309e-47
MsaG008004	MsaG019535	0.805960	1.755849e-49	2.722254e-47
MsaG008004	MsaG027019	0.808231	5.837087e-50	9.551887e-48
MsaG008004	MsaG030695	0.811436	1.201761e-50	2.125545e-48
MsaG008004	MsaG033256	0.807287	9.241801e-50	1.478462e-47
MsaG008004	MsaG032395	0.818037	4.209135e-52	8.793967e-50
MsaG008004	MsaG030569	0.821851	5.702651e-53	1.317226e-50
MsaG008004	MsaG033138	0.807822	7.125727e-50	1.154655e-47
MsaG008004	MsaG033779	0.818146	3.978181e-52	8.334845e-50
MsaG008004	MsaG038289	0.820690	1.053132e-52	2.358776e-50
MsaG008004	MsaG036228	0.809785	2.722394e-50	4.625074e-48
MsaG008004	MsaG036777	0.802547	8.950755e-49	1.282192e-46
MsaG008004	MsaG036316	0.819346	2.131083e-52	4.607147e-50
MsaG008004	MsaG035345	0.820673	1.062702e-52	2.379116e-50
MsaG008004	MsaG036911	0.824655	1.271415e-53	3.168215e-51
MsaG008004	MsaG042682	0.821144	8.288515e-53	1.879043e-50
MsaG008004	MsaG047032	0.831224	3.397183e-55	1.018240e-52
MsaG008004	MsaG047198	0.801621	1.384987e-48	1.942447e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008004	MtrunA17_Chr2g0298701	93.305	717	32	2	1	711	1	707	0.0	1304
MsaG008004	MtrunA17_Chr1g0207661	47.210	233	115	3	139	371	245	469	4.54e-58	211

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008004	AT4G29940.1	58.118	425	158	5	136	546	97	515	1.81e-155	470
MsaG008004	AT4G29940.2	58.118	425	158	5	136	546	97	515	1.90e-155	469
MsaG008004	AT3G19510.1	46.586	249	121	3	121	369	160	396	7.36e-61	218
MsaG008004	AT3G19510.2	46.586	249	121	3	121	369	160	396	7.36e-61	218

Find 127 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCCAAGTGTGGAGGTATTTC+TGG	0.146341	2:-26404632	None:intergenic
AGGGCGTCCTTCACGGATTT+TGG	0.158407	2:-26403961	None:intergenic
AAGAACAATGATAGAATAAA+AGG	0.187496	2:+26403723	MsaT008004.1:CDS
TCCAGCATGTGGTCTTTAAA+TGG	0.227946	2:+26402953	MsaT008004.1:CDS
ATCCTTGGTTGGCACCTTAT+TGG	0.235926	2:-26401205	None:intergenic
CAAAACCAGCCTTGGTCTTC+AGG	0.247836	2:-26402211	None:intergenic
CCTCCACACTTGGGAGAAAA+TGG	0.255233	2:+26404641	MsaT008004.1:CDS
CTATCATTGTTCTTATTATT+CGG	0.255964	2:-26403714	None:intergenic
TCAGTCTGTGTTTCTTCCTT+TGG	0.278404	2:-26401119	None:intergenic
AACCTGCCAAGTACTGTCTA+AGG	0.296673	2:-26402299	None:intergenic
TGGCTTTCTTCCTTCCTCTC+TGG	0.343007	2:-26402872	None:intergenic
AGATATTCCTTGTTCTTCTC+TGG	0.348606	2:-26401437	None:intergenic
AGTTACTGATTCTTCCAATA+AGG	0.353196	2:+26401191	MsaT008004.1:CDS
TGACTGTAAGATAGAAATAT+TGG	0.355208	2:+26402243	MsaT008004.1:CDS
GGATTATAGTCATCGTCTTC+AGG	0.355847	2:-26402851	None:intergenic
TTTCGAAAGGGCGTCCTTCA+CGG	0.358216	2:-26403968	None:intergenic
AGAATAAAAGGGAATTCTTC+AGG	0.374854	2:+26403735	MsaT008004.1:CDS
TCAAATAAAAGATTGATTGT+TGG	0.379038	2:+26401231	MsaT008004.1:CDS
CAGAGTATAATATCATTATC+TGG	0.390452	2:-26402021	None:intergenic
GAAGATGAAGATTGGGGTCC+TGG	0.398942	2:+26403615	MsaT008004.1:CDS
AGATTGAAGCAAAGATTAAC+TGG	0.399258	2:+26405526	MsaT008004.1:CDS
GGACGCCCTTTCGAAAGAAA+TGG	0.401279	2:+26403975	MsaT008004.1:CDS
AAGAAGTGTGAAAATGTTAC+TGG	0.405838	2:+26404563	MsaT008004.1:CDS
ATGTTCCTATAGCTGAGTTA+AGG	0.407231	2:+26405611	MsaT008004.1:CDS
AAACTTCTCTTAATCATGAT+AGG	0.417638	2:+26401304	MsaT008004.1:CDS
AGTTCAGTTGGTAGTATTGA+AGG	0.418881	2:+26401823	MsaT008004.1:CDS
CACATAGATTCTGATGAATC+CGG	0.421682	2:+26403028	MsaT008004.1:CDS
CCGTGATGCCATTCACCAAC+TGG	0.421979	2:+26401792	MsaT008004.1:CDS
GAGATGTCTTGATCCTCCTT+TGG	0.422829	2:+26402074	MsaT008004.1:CDS
AGTGAGTGAAGATGAAGATT+GGG	0.435286	2:+26403608	MsaT008004.1:CDS
CCCCTTAGACAGTACTTGGC+AGG	0.439188	2:+26402297	MsaT008004.1:CDS
ATAGGAACATACATAATAGA+TGG	0.443496	2:-26405598	None:intergenic
CGATAATGCAGGTTAACAAA+TGG	0.446754	2:+26404176	MsaT008004.1:intron
ACATGTTCCTTTGTGTTACT+CGG	0.451425	2:-26401048	None:intergenic
TGTTCCTATAGCTGAGTTAA+GGG	0.455270	2:+26405612	MsaT008004.1:CDS
TAATGAAACTATTGCAAGAA+AGG	0.457497	2:+26405413	MsaT008004.1:CDS
AGACTCCGAGGCAGCAGAGT+TGG	0.457827	2:+26405465	MsaT008004.1:CDS
AAGTGAGTGAAGATGAAGAT+TGG	0.458660	2:+26403607	MsaT008004.1:CDS
AGGCAACAAACGCGCATCTT+GGG	0.460252	2:+26402266	MsaT008004.1:CDS
GTTCAAAATTGCAGATCAAA+GGG	0.463923	2:+26405550	MsaT008004.1:CDS
GAGGCAACAAACGCGCATCT+TGG	0.466032	2:+26402265	MsaT008004.1:CDS
AAATTCCAACTCTGCTGCCT+CGG	0.470562	2:-26405470	None:intergenic
CTGGATTCTCTTAGTTCAGT+TGG	0.473153	2:+26401811	MsaT008004.1:CDS
ATTTCCCCTTAGACAGTACT+TGG	0.477866	2:+26402293	MsaT008004.1:CDS
AAAGTCTACATAAAACTGAT+AGG	0.478611	2:+26401256	MsaT008004.1:CDS
TTCCTCCTGAAGACCAAGGC+TGG	0.484945	2:+26402206	MsaT008004.1:CDS
CAAGTCCCATTTCTTTCGAA+AGG	0.486339	2:-26403981	None:intergenic
TATAGCTGAGTTAAGGGAAA+AGG	0.488966	2:+26405618	MsaT008004.1:CDS
AGAACAATGATAGAATAAAA+GGG	0.492512	2:+26403724	MsaT008004.1:CDS
GACGCCCTTTCGAAAGAAAT+GGG	0.493793	2:+26403976	MsaT008004.1:CDS
AGTAATGCAGCATCGCCGTC+AGG	0.494282	2:-26402797	None:intergenic
ACCAGAAATACCTCCACACT+TGG	0.495132	2:+26404631	MsaT008004.1:CDS
AAGTCCCATTTCTTTCGAAA+GGG	0.495232	2:-26403980	None:intergenic
CTTCTGTGTTGATGCCACCA+TGG	0.498525	2:-26402892	None:intergenic
TACTAAATCAAGAAGAAGAA+TGG	0.501022	2:+26402816	MsaT008004.1:CDS
AGTTCAAAATTGCAGATCAA+AGG	0.506042	2:+26405549	MsaT008004.1:CDS
CTCCAGCGTAAGCATCGATA+AGG	0.509397	2:-26401485	None:intergenic
TTATTTGAAGAATCCTTGGT+TGG	0.511651	2:-26401216	None:intergenic
ACGACCACATGCTATTTCCC+CGG	0.515781	2:-26403047	None:intergenic
ATCGATGCTTACGCTGGAGA+AGG	0.517287	2:+26401489	MsaT008004.1:CDS
GTCACAGTCGAGAGAAGATT+AGG	0.517689	2:+26401713	MsaT008004.1:intron
TTCTACATCACAACATGTGC+AGG	0.518102	2:+26404487	MsaT008004.1:CDS
CATGGCACTTAAAATGAGAA+AGG	0.518506	2:+26404216	MsaT008004.1:CDS
TCCATTTAAAGACCACATGC+TGG	0.518896	2:-26402954	None:intergenic
AAGAGAATCCAGTTGGTGAA+TGG	0.519329	2:-26401800	None:intergenic
GGTCGTTAGAATAATATTCA+AGG	0.522036	2:-26403006	None:intergenic
AGAGAAGATTAGGCCAGAAA+AGG	0.525646	2:+26401723	MsaT008004.1:CDS
AAGGAGGATCAAGACATCTC+TGG	0.528780	2:-26402071	None:intergenic
ACATAGATTCTGATGAATCC+GGG	0.537290	2:+26403029	MsaT008004.1:CDS
AAAGGAACATGTCAAGTTGA+AGG	0.541741	2:+26401059	MsaT008004.1:CDS
GGTTCTGTCATTGCTACAGA+TGG	0.542741	2:+26401844	MsaT008004.1:CDS
ACCTGCCAAGTACTGTCTAA+GGG	0.543897	2:-26402298	None:intergenic
AACCTTATCGATGCTTACGC+TGG	0.549016	2:+26401483	MsaT008004.1:CDS
AATACTTGCAAAACCAGCCT+TGG	0.554312	2:-26402219	None:intergenic
ATGCTTACGCTGGAGAAGGT+TGG	0.555448	2:+26401493	MsaT008004.1:CDS
TATTCCTTGTTCTTCTCTGG+AGG	0.556906	2:-26401434	None:intergenic
GAATGTTCTATGTTAGATGA+AGG	0.561374	2:+26402977	MsaT008004.1:CDS
GAGAAGAGAAAAGGAGTCTG+AGG	0.568921	2:+26403647	MsaT008004.1:CDS
TCTTCACTCACTTGTTCACA+AGG	0.570005	2:-26403597	None:intergenic
AACATCATCACTGACCTCCA+TGG	0.580335	2:-26405386	None:intergenic
TGACTATAATCCAGAGAGGA+AGG	0.581091	2:+26402862	MsaT008004.1:CDS
GGGAAATAGCATGTGGTCGT+AGG	0.581992	2:+26403050	MsaT008004.1:CDS
AGGAAAGGTGAGATAGATGT+TGG	0.583618	2:+26401324	MsaT008004.1:CDS
ACAACATGTGCAGGAAGAAG+AGG	0.585587	2:+26404496	MsaT008004.1:CDS
AATGGGACTTGATGCTGCAA+AGG	0.589378	2:+26403993	MsaT008004.1:CDS
AATGATATTATACTCTGTGA+TGG	0.590683	2:+26402027	MsaT008004.1:CDS
GATAGATGTTGGTGATCAAG+AGG	0.591239	2:+26401335	MsaT008004.1:CDS
TTTGTTTAGCTTCAAGAAGG+AGG	0.591319	2:+26404425	MsaT008004.1:intron
CAAGTAGCACAAAACACCAA+AGG	0.591492	2:+26401103	MsaT008004.1:CDS
TCTCTTAATCATGATAGGAA+AGG	0.591668	2:+26401309	MsaT008004.1:CDS
CAAGTAGTTCTTCCAGCATG+TGG	0.596343	2:+26402942	MsaT008004.1:CDS
TTCCAATAAGGTGCCAACCA+AGG	0.598203	2:+26401203	MsaT008004.1:CDS
CTGTAAGATAGAAATATTGG+AGG	0.603472	2:+26402246	MsaT008004.1:CDS
CCAGTTGGTGAATGGCATCA+CGG	0.605629	2:-26401792	None:intergenic
AAATCAAAATCTCATAAACT+CGG	0.606698	2:+26401141	MsaT008004.1:CDS
TACGCTGGAGAAGGTTGGAA+AGG	0.611602	2:+26401498	MsaT008004.1:CDS
CATGGTGGCATCAACACAGA+AGG	0.612139	2:+26402893	MsaT008004.1:CDS
GAAGAAGCTGCTATTCCTGA+CGG	0.614571	2:+26402782	MsaT008004.1:CDS
TATCACTTCTAAGAACTCAA+AGG	0.617285	2:+26404463	MsaT008004.1:CDS
CGGAGGTTGCACAAATGTGT+CGG	0.617900	2:+26401161	MsaT008004.1:CDS
CTGAACTAAGAGAATCCAGT+TGG	0.618760	2:-26401807	None:intergenic
CTGTCTTCAGTCTCCAAAGG+AGG	0.618854	2:-26402087	None:intergenic
TCACTGTCTTCAGTCTCCAA+AGG	0.619248	2:-26402090	None:intergenic
CGGATTCATCAGAATCTATG+TGG	0.622262	2:-26403027	None:intergenic
CCTGCCAAGTACTGTCTAAG+GGG	0.632462	2:-26402297	None:intergenic
GAGAGGAAGGAAGAAAGCCA+TGG	0.637015	2:+26402875	MsaT008004.1:CDS
ACTGAGAAGTTAAATAACCA+AGG	0.637280	2:+26401015	MsaT008004.1:CDS
CTTGGGAGAAAATGGCAACA+AGG	0.637413	2:+26404649	MsaT008004.1:CDS
TCATGTGAAAACCTAAAACA+AGG	0.637563	2:-26403768	None:intergenic
TCGTCTTCAGGATCATCTGA+CGG	0.640667	2:-26402839	None:intergenic
CCAGAAATACCTCCACACTT+GGG	0.646657	2:+26404632	MsaT008004.1:CDS
GAGAAGGTTGGAAAGGTCAG+AGG	0.649501	2:+26401505	MsaT008004.1:CDS
AGGAAGGAAGAAAGCCATGG+TGG	0.650653	2:+26402878	MsaT008004.1:CDS
GTGAGTGAAGATGAAGATTG+GGG	0.652036	2:+26403609	MsaT008004.1:CDS
AACCAGCCTTGGTCTTCAGG+AGG	0.652976	2:-26402208	None:intergenic
CATAGATTCTGATGAATCCG+GGG	0.669012	2:+26403030	MsaT008004.1:CDS
TACAAAACCGAGTAACACAA+AGG	0.669844	2:+26401041	MsaT008004.1:CDS
GCTTCCTCCAAAATCCGTGA+AGG	0.670380	2:+26403954	MsaT008004.1:CDS
GCAGTTCCTCCTGAAGACCA+AGG	0.671156	2:+26402202	MsaT008004.1:intron
TCACTCACTTGTTCACAAGG+TGG	0.675741	2:-26403594	None:intergenic
TGCATTTGAAGGAGACTCCG+AGG	0.681549	2:+26405453	MsaT008004.1:CDS
TCAAAATCTCATAAACTCGG+AGG	0.684427	2:+26401144	MsaT008004.1:CDS
TTATCTTCAGGATTCCATGG+AGG	0.700522	2:+26405372	MsaT008004.1:intron
GAATCCGGGGAAATAGCATG+TGG	0.711313	2:+26403043	MsaT008004.1:CDS
ACGATGACTATAATCCAGAG+AGG	0.733914	2:+26402858	MsaT008004.1:CDS
TACGCCTCCAGAGAAGAACA+AGG	0.736747	2:+26401430	MsaT008004.1:CDS
AATTCAACAAAGATACAACG+AGG	0.805911	2:+26401279	MsaT008004.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	26401006	26405648	26401006	ID=MsaG008004
Chr2	mRNA	26401006	26405648	26401006	ID=MsaT008004.1;Parent=MsaG008004
Chr2	exon	26401006	26401526	26401006	ID=MsaT008004.1.exon1;Parent=MsaT008004.1
Chr2	CDS	26401006	26401526	26401006	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26401720	26401885	26401720	ID=MsaT008004.1.exon2;Parent=MsaT008004.1
Chr2	CDS	26401720	26401885	26401720	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26401985	26402108	26401985	ID=MsaT008004.1.exon3;Parent=MsaT008004.1
Chr2	CDS	26401985	26402108	26401985	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26402206	26402318	26402206	ID=MsaT008004.1.exon4;Parent=MsaT008004.1
Chr2	CDS	26402206	26402318	26402206	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26402770	26403108	26402770	ID=MsaT008004.1.exon5;Parent=MsaT008004.1
Chr2	CDS	26402770	26403108	26402770	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26403573	26403800	26403573	ID=MsaT008004.1.exon6;Parent=MsaT008004.1
Chr2	CDS	26403573	26403800	26403573	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26403925	26404014	26403925	ID=MsaT008004.1.exon7;Parent=MsaT008004.1
Chr2	CDS	26403925	26404014	26403925	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26404187	26404237	26404187	ID=MsaT008004.1.exon8;Parent=MsaT008004.1
Chr2	CDS	26404187	26404237	26404187	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26404434	26404670	26404434	ID=MsaT008004.1.exon9;Parent=MsaT008004.1
Chr2	CDS	26404434	26404670	26404434	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26405382	26405648	26405382	ID=MsaT008004.1.exon10;Parent=MsaT008004.1
Chr2	CDS	26405382	26405648	26405382	ID=cds.MsaT008004.1;Parent=MsaT008004.1

Gene Sequence

>MsaT008004.1

ATGCGGGATACTGAGAAGTTAAATAACCAAGGATCTACAAAACCGAGTAACACAAAGGAACATGTCAAGTTGAAGGTAGATTCCCCCCAGTTCAAAACAAGTAGCACAAAACACCAAAGGAAGAAACACAGACTGAAATCAAAATCTCATAAACTCGGAGGTTGCACAAATGTGTCGGTGAAGACAGTTACTGATTCTTCCAATAAGGTGCCAACCAAGGATTCTTCAAATAAAAGATTGATTGTTGGACAAAGTCTACATAAAACTGATAGGAATTCAACAAAGATACAACGAGGAAAAACTTCTCTTAATCATGATAGGAAAGGTGAGATAGATGTTGGTGATCAAGAGGAAAATATTCAAAAACGTAAGAGAAGGAGAAAGAAGAAAAGACAGAGACATGATGTAGATCTTGATGATACTGTACGCCTCCAGAGAAGAACAAGGAATATCTTAATCAGAATGAAGCAAGAGCAGAACCTTATCGATGCTTACGCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAGAAGATTAGGCCAGAAAAGGAGCTGCAACGAGCAAAAAAGCAGATTTTAAAATGCAAGCTTAGTATCCGTGATGCCATTCACCAACTGGATTCTCTTAGTTCAGTTGGTAGTATTGAAGGTTCTGTCATTGCTACAGATGGATCTGTTTCTCATGAACATATATTCTGTGCAAATTGCAAGATAAACGAAGTTTCTCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCGTTTCACCAGAGATGTCTTGATCCTCCTTTGGAGACTGAAGACATTCCTCCTGAAGACCAAGGCTGGTTTTGCAAGTATTGTGACTGTAAGATAGAAATATTGGAGGCAACAAACGCGCATCTTGGGACTCATTTCCCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAAGCTGCTATTCCTGACGGCGATGCTGCATTACTAAATCAAGAAGAAGAATGGCCGTCAGATGATCCTGAAGACGATGACTATAATCCAGAGAGGAAGGAAGAAAGCCATGGTGGCATCAACACAGAAGGAAATGATGAAAACGCATCTGATGATTCAAGTAGTTCTTCCAGCATGTGGTCTTTAAATGGAGAATGTTCTATGTTAGATGAAGGCATCAACCTTGAATATTATTCTAACGACCACATAGATTCTGATGAATCCGGGGAAATAGCATGTGGTCGTAGGCAGCGTAGAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGAAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGATTGGGGTCCTGGAAAAAGACGGAGAAGAGAAAAGGAGTCTGAGGCAGTTAATACTCTTATGACTTTACATGAGAGTGAAAATAAATATCCGAATAATAAGAACAATGATAGAATAAAAGGGAATTCTTCAGGCATAAAAAGACCTTGTTTTAGGTTTTCACATGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAAATCCGTGAAGGACGCCCTTTCGAAAGAAATGGGACTTGATGCTGCAAAGGTTAACAAATGGTTCAAAAATGCACGTTACATGGCACTTAAAATGAGAAAGCTTCAAGAAGGAGGACAACAGCTTCAGAGTATCACTTCTAAGAACTCAAAGGATTCTACATCACAACATGTGCAGGAAGAAGAGGTTTTGAACCCGAAGATCGCAAAAATTACTGTGGTTCGTCCCTTGAAGAAGTGTGAAAATGTTACTGGCAAAGAAAAAACAAAAGCATCTAGCAGTCCTTTGAAGAAAAAGCGACCAGAAATACCTCCACACTTGGGAGAAAATGGCAACAAGGATTCCATGGAGGTCAGTGATGATGTTAGCTTAATGAAACTATTGCAAGAAAGGAAAAAGAAGGTAAGTTTTGCATTTGAAGGAGACTCCGAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGACGAAAATAGATAGATTGAAGCAAAGATTAACTGGAGTTCAAAATTGCAGATCAAAGGGTTCAGATGAAGTTCATTTGAATGAGCCATCTATTATGTATGTTCCTATAGCTGAGTTAAGGGAAAAGGTGAAATAG

Protein sequence

>MsaT008004.1

MRDTEKLNNQGSTKPSNTKEHVKLKVDSPQFKTSSTKHQRKKHRLKSKSHKLGGCTNVSVKTVTDSSNKVPTKDSSNKRLIVGQSLHKTDRNSTKIQRGKTSLNHDRKGEIDVGDQEENIQKRKRRRKKKRQRHDVDLDDTVRLQRRTRNILIRMKQEQNLIDAYAGEGWKGQSREKIRPEKELQRAKKQILKCKLSIRDAIHQLDSLSSVGSIEGSVIATDGSVSHEHIFCANCKINEVSPDNDIILCDGTCNRAFHQRCLDPPLETEDIPPEDQGWFCKYCDCKIEILEATNAHLGTHFPLDSTWQDVFKEEAAIPDGDAALLNQEEEWPSDDPEDDDYNPERKEESHGGINTEGNDENASDDSSSSSSMWSLNGECSMLDEGINLEYYSNDHIDSDESGEIACGRRQRRAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRRRREKESEAVNTLMTLHESENKYPNNKNNDRIKGNSSGIKRPCFRFSHDAVEKLRQVFAENELPPKSVKDALSKEMGLDAAKVNKWFKNARYMALKMRKLQEGGQQLQSITSKNSKDSTSQHVQEEEVLNPKIAKITVVRPLKKCENVTGKEKTKASSSPLKKKRPEIPPHLGENGNKDSMEVSDDVSLMKLLQERKKKVSFAFEGDSEAAELEFERLSKVKTKIDRLKQRLTGVQNCRSKGSDEVHLNEPSIMYVPIAELREKVK*