AlfalfaGEDB | MsaG008004

M. sativa ssp. caerulea / MsaG008004

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00628.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008004	XP_003595073.1	93.305	717	32	2	1	711	1	707	0.0	1304

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008004	sp\|P48785\|PRH_ARATH	58.118	425	158	5	136	546	97	515	1.78e-154	470

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008004	tr\|G7IG86\|G7IG86_MEDTR	93.305	717	32	2	1	711	1	707	0.0	1304

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TFs/TRs:

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Gene ID	Type	Classification
MsaG008004	TF	HB-PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000138	MsaG008004	0.820503	1.161827e-52	2.589570e-50
MsaG000167	MsaG008004	0.801781	1.284331e-48	1.807839e-46
MsaG000260	MsaG008004	0.815624	1.455899e-51	2.859236e-49
MsaG000910	MsaG008004	0.809834	2.658058e-50	4.521143e-48
MsaG001270	MsaG008004	0.813618	4.028162e-51	7.521069e-49
MsaG001277	MsaG008004	0.844094	1.748154e-58	7.775534e-56
MsaG002146	MsaG008004	0.806886	1.122525e-49	1.778838e-47
MsaG002597	MsaG008004	0.824111	1.704428e-53	4.184866e-51
MsaG002605	MsaG008004	0.834887	4.209703e-56	1.405331e-53
MsaG002691	MsaG008004	0.835615	2.761347e-56	9.421555e-54

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008004	MtrunA17_Chr2g0298701	93.305	717	32	2	1	711	1	707	0.0	1304
MsaG008004	MtrunA17_Chr1g0207661	47.210	233	115	3	139	371	245	469	4.54e-58	211

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008004	AT4G29940.1	58.118	425	158	5	136	546	97	515	1.81e-155	470
MsaG008004	AT4G29940.2	58.118	425	158	5	136	546	97	515	1.90e-155	469
MsaG008004	AT3G19510.1	46.586	249	121	3	121	369	160	396	7.36e-61	218
MsaG008004	AT3G19510.2	46.586	249	121	3	121	369	160	396	7.36e-61	218

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Find 127 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCTCTTAATCATGAT+AGG	0.417638	2:+26401304	MsaT008004.1:CDS
AAAGGAACATGTCAAGTTGA+AGG	0.541741	2:+26401059	MsaT008004.1:CDS
AAAGTCTACATAAAACTGAT+AGG	0.478611	2:+26401256	MsaT008004.1:CDS
AAATCAAAATCTCATAAACT+CGG	0.606698	2:+26401141	MsaT008004.1:CDS
AAATTCCAACTCTGCTGCCT+CGG	0.470562	2:-26405470	None:intergenic
AACATCATCACTGACCTCCA+TGG	0.580335	2:-26405386	None:intergenic
AACCAGCCTTGGTCTTCAGG+AGG	0.652976	2:-26402208	None:intergenic
AACCTGCCAAGTACTGTCTA+AGG	0.296673	2:-26402299	None:intergenic
AACCTTATCGATGCTTACGC+TGG	0.549016	2:+26401483	MsaT008004.1:CDS
AAGAACAATGATAGAATAAA+AGG	0.187496	2:+26403723	MsaT008004.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	26401006	26405648	26401006	ID=MsaG008004
Chr2	mRNA	26401006	26405648	26401006	ID=MsaT008004.1;Parent=MsaG008004
Chr2	exon	26401006	26401526	26401006	ID=MsaT008004.1.exon1;Parent=MsaT008004.1
Chr2	CDS	26401006	26401526	26401006	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26401720	26401885	26401720	ID=MsaT008004.1.exon2;Parent=MsaT008004.1
Chr2	CDS	26401720	26401885	26401720	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26401985	26402108	26401985	ID=MsaT008004.1.exon3;Parent=MsaT008004.1
Chr2	CDS	26401985	26402108	26401985	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26402206	26402318	26402206	ID=MsaT008004.1.exon4;Parent=MsaT008004.1
Chr2	CDS	26402206	26402318	26402206	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26402770	26403108	26402770	ID=MsaT008004.1.exon5;Parent=MsaT008004.1
Chr2	CDS	26402770	26403108	26402770	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26403573	26403800	26403573	ID=MsaT008004.1.exon6;Parent=MsaT008004.1
Chr2	CDS	26403573	26403800	26403573	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26403925	26404014	26403925	ID=MsaT008004.1.exon7;Parent=MsaT008004.1
Chr2	CDS	26403925	26404014	26403925	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26404187	26404237	26404187	ID=MsaT008004.1.exon8;Parent=MsaT008004.1
Chr2	CDS	26404187	26404237	26404187	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26404434	26404670	26404434	ID=MsaT008004.1.exon9;Parent=MsaT008004.1
Chr2	CDS	26404434	26404670	26404434	ID=cds.MsaT008004.1;Parent=MsaT008004.1
Chr2	exon	26405382	26405648	26405382	ID=MsaT008004.1.exon10;Parent=MsaT008004.1
Chr2	CDS	26405382	26405648	26405382	ID=cds.MsaT008004.1;Parent=MsaT008004.1

Gene Sequence

>MsaT008004.1

ATGCGGGATACTGAGAAGTTAAATAACCAAGGATCTACAAAACCGAGTAACACAAAGGAACATGTCAAGTTGAAGGTAGATTCCCCCCAGTTCAAAACAAGTAGCACAAAACACCAAAGGAAGAAACACAGACTGAAATCAAAATCTCATAAACTCGGAGGTTGCACAAATGTGTCGGTGAAGACAGTTACTGATTCTTCCAATAAGGTGCCAACCAAGGATTCTTCAAATAAAAGATTGATTGTTGGACAAAGTCTACATAAAACTGATAGGAATTCAACAAAGATACAACGAGGAAAAACTTCTCTTAATCATGATAGGAAAGGTGAGATAGATGTTGGTGATCAAGAGGAAAATATTCAAAAACGTAAGAGAAGGAGAAAGAAGAAAAGACAGAGACATGATGTAGATCTTGATGATACTGTACGCCTCCAGAGAAGAACAAGGAATATCTTAATCAGAATGAAGCAAGAGCAGAACCTTATCGATGCTTACGCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAGAAGATTAGGCCAGAAAAGGAGCTGCAACGAGCAAAAAAGCAGATTTTAAAATGCAAGCTTAGTATCCGTGATGCCATTCACCAACTGGATTCTCTTAGTTCAGTTGGTAGTATTGAAGGTTCTGTCATTGCTACAGATGGATCTGTTTCTCATGAACATATATTCTGTGCAAATTGCAAGATAAACGAAGTTTCTCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCGTTTCACCAGAGATGTCTTGATCCTCCTTTGGAGACTGAAGACATTCCTCCTGAAGACCAAGGCTGGTTTTGCAAGTATTGTGACTGTAAGATAGAAATATTGGAGGCAACAAACGCGCATCTTGGGACTCATTTCCCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAAGCTGCTATTCCTGACGGCGATGCTGCATTACTAAATCAAGAAGAAGAATGGCCGTCAGATGATCCTGAAGACGATGACTATAATCCAGAGAGGAAGGAAGAAAGCCATGGTGGCATCAACACAGAAGGAAATGATGAAAACGCATCTGATGATTCAAGTAGTTCTTCCAGCATGTGGTCTTTAAATGGAGAATGTTCTATGTTAGATGAAGGCATCAACCTTGAATATTATTCTAACGACCACATAGATTCTGATGAATCCGGGGAAATAGCATGTGGTCGTAGGCAGCGTAGAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGAAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGATTGGGGTCCTGGAAAAAGACGGAGAAGAGAAAAGGAGTCTGAGGCAGTTAATACTCTTATGACTTTACATGAGAGTGAAAATAAATATCCGAATAATAAGAACAATGATAGAATAAAAGGGAATTCTTCAGGCATAAAAAGACCTTGTTTTAGGTTTTCACATGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAAATCCGTGAAGGACGCCCTTTCGAAAGAAATGGGACTTGATGCTGCAAAGGTTAACAAATGGTTCAAAAATGCACGTTACATGGCACTTAAAATGAGAAAGCTTCAAGAAGGAGGACAACAGCTTCAGAGTATCACTTCTAAGAACTCAAAGGATTCTACATCACAACATGTGCAGGAAGAAGAGGTTTTGAACCCGAAGATCGCAAAAATTACTGTGGTTCGTCCCTTGAAGAAGTGTGAAAATGTTACTGGCAAAGAAAAAACAAAAGCATCTAGCAGTCCTTTGAAGAAAAAGCGACCAGAAATACCTCCACACTTGGGAGAAAATGGCAACAAGGATTCCATGGAGGTCAGTGATGATGTTAGCTTAATGAAACTATTGCAAGAAAGGAAAAAGAAGGTAAGTTTTGCATTTGAAGGAGACTCCGAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGACGAAAATAGATAGATTGAAGCAAAGATTAACTGGAGTTCAAAATTGCAGATCAAAGGGTTCAGATGAAGTTCATTTGAATGAGCCATCTATTATGTATGTTCCTATAGCTGAGTTAAGGGAAAAGGTGAAATAG

Protein sequence

>MsaT008004.1

MRDTEKLNNQGSTKPSNTKEHVKLKVDSPQFKTSSTKHQRKKHRLKSKSHKLGGCTNVSVKTVTDSSNKVPTKDSSNKRLIVGQSLHKTDRNSTKIQRGKTSLNHDRKGEIDVGDQEENIQKRKRRRKKKRQRHDVDLDDTVRLQRRTRNILIRMKQEQNLIDAYAGEGWKGQSREKIRPEKELQRAKKQILKCKLSIRDAIHQLDSLSSVGSIEGSVIATDGSVSHEHIFCANCKINEVSPDNDIILCDGTCNRAFHQRCLDPPLETEDIPPEDQGWFCKYCDCKIEILEATNAHLGTHFPLDSTWQDVFKEEAAIPDGDAALLNQEEEWPSDDPEDDDYNPERKEESHGGINTEGNDENASDDSSSSSSMWSLNGECSMLDEGINLEYYSNDHIDSDESGEIACGRRQRRAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRRRREKESEAVNTLMTLHESENKYPNNKNNDRIKGNSSGIKRPCFRFSHDAVEKLRQVFAENELPPKSVKDALSKEMGLDAAKVNKWFKNARYMALKMRKLQEGGQQLQSITSKNSKDSTSQHVQEEEVLNPKIAKITVVRPLKKCENVTGKEKTKASSSPLKKKRPEIPPHLGENGNKDSMEVSDDVSLMKLLQERKKKVSFAFEGDSEAAELEFERLSKVKTKIDRLKQRLTGVQNCRSKGSDEVHLNEPSIMYVPIAELREKVK*