AlfalfaGEDB | MsaG008008

M. sativa ssp. caerulea / MsaG008008

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008008	XP_003595077.1	94.262	244	14	0	1	244	1	244	5.51e-169	476

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008008	sp\|Q2HIV9\|BH035_ARATH	62.449	245	83	6	1	241	1	240	2.03e-94	280

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008008	tr\|G7IG90\|G7IG90_MEDTR	94.262	244	14	0	1	244	1	244	2.63e-169	476

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TFs/TRs:

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Gene ID	Type	Classification
MsaG008008	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008008	MtrunA17_Chr2g0298751	94.262	244	14	0	1	244	1	244	5.07e-173	476
MsaG008008	MtrunA17_Chr8g0365711	32.353	170	107	2	51	220	243	404	1.13e-23	98.6
MsaG008008	MtrunA17_Chr1g0211081	32.911	237	128	7	6	213	258	492	3.77e-22	94.7
MsaG008008	MtrunA17_Chr2g0320291	28.796	191	113	5	51	236	132	304	5.14e-19	84.3
MsaG008008	MtrunA17_Chr7g0252041	32.632	190	115	6	49	232	283	465	8.94e-18	82.0
MsaG008008	MtrunA17_Chr3g0131691	30.481	187	122	5	48	232	294	474	1.12e-17	81.6
MsaG008008	MtrunA17_Chr4g0028071	31.098	164	96	3	51	211	148	297	7.14e-17	78.6
MsaG008008	MtrunA17_Chr7g0260841	30.286	175	85	4	53	227	356	493	1.39e-14	72.8
MsaG008008	MtrunA17_Chr7g0275821	27.219	169	92	4	53	216	253	395	3.59e-14	71.2
MsaG008008	MtrunA17_Chr4g0049331	28.049	164	101	4	53	214	136	284	8.98e-14	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008008	AT5G57150.1	63.525	244	81	6	1	241	1	239	1.56e-96	283
MsaG008008	AT4G29930.1	55.200	250	98	3	1	238	1	248	4.84e-90	266
MsaG008008	AT4G29930.6	55.417	240	87	3	1	238	1	222	8.75e-88	259
MsaG008008	AT4G29930.2	55.000	240	85	3	1	238	1	219	7.94e-87	257
MsaG008008	AT5G57150.5	65.596	218	67	6	1	215	1	213	1.63e-86	256
MsaG008008	AT5G57150.2	63.801	221	71	6	1	217	1	216	1.47e-85	254
MsaG008008	AT5G57150.3	64.384	219	69	6	1	215	1	214	1.49e-85	254
MsaG008008	AT5G57150.4	64.384	219	69	6	1	215	1	214	6.71e-84	251
MsaG008008	AT4G29930.3	54.825	228	89	3	1	216	1	226	6.79e-80	241
MsaG008008	AT4G29930.7	54.825	228	89	3	1	216	1	226	6.79e-80	241

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Find 45 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGCTTCCTGTGTTGCTA+AGG	0.527358	2:-26446417	MsaT008008.1:CDS
ACATTGTCTCTGAGAGGAAT+AGG	0.413409	2:-26447420	MsaT008008.1:CDS
ACCTATCAAGCTCTTGGGTT+TGG	0.289916	2:+26474566	None:intergenic
ACTCTTTGCACTTAGAGCAG+TGG	0.626022	2:-26447377	MsaT008008.1:CDS
AGATAATGGAACTTGAATCT+GGG	0.607917	2:-26446477	MsaT008008.1:CDS
AGATGCTCATAGGGCTTAGA+GGG	0.580755	2:+26438661	None:intergenic
AGGGTCATTAAGAGCTGCAA+TGG	0.567337	2:+26438680	None:intergenic
AGTGGTCCCAAACATTAGCA+AGG	0.661525	2:-26447359	MsaT008008.1:intron
ATACATGGGAGAGAATACAA+TGG	0.777577	2:-26444751	MsaT008008.1:CDS
ATGTTTACCTTGCTAATGTT+TGG	0.403010	2:+26447352	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	26438659	26474641	26438659	ID=MsaG008008
Chr2	mRNA	26438659	26474641	26438659	ID=MsaT008008.1;Parent=MsaG008008
Chr2	exon	26438659	26438748	26438659	ID=MsaT008008.1.exon5;Parent=MsaT008008.1
Chr2	CDS	26438659	26438748	26438659	ID=cds.MsaT008008.1;Parent=MsaT008008.1
Chr2	exon	26444614	26444784	26444614	ID=MsaT008008.1.exon4;Parent=MsaT008008.1
Chr2	CDS	26444614	26444784	26444614	ID=cds.MsaT008008.1;Parent=MsaT008008.1
Chr2	exon	26446345	26446578	26446345	ID=MsaT008008.1.exon3;Parent=MsaT008008.1
Chr2	CDS	26446345	26446578	26446345	ID=cds.MsaT008008.1;Parent=MsaT008008.1
Chr2	exon	26447360	26447525	26447360	ID=MsaT008008.1.exon2;Parent=MsaT008008.1
Chr2	CDS	26447360	26447525	26447360	ID=cds.MsaT008008.1;Parent=MsaT008008.1
Chr2	exon	26474568	26474641	26474568	ID=MsaT008008.1.exon1;Parent=MsaT008008.1
Chr2	CDS	26474568	26474641	26474568	ID=cds.MsaT008008.1;Parent=MsaT008008.1

Gene Sequence

>MsaT008008.1

ATGGAGAACATTGGTGATGAGTACAAGCTTTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTTGATAGCTGGGGATTGGATGAGGCTTTTTCAGGGTATTATGATTCAAGCTCCCCAGATGGTGCAGCATCATCAGGAGTTTCATCTAAGAACATTGTCTCTGAGAGGAATAGGAGGAAGAAGCTTAATGAAAGACTCTTTGCACTTAGAGCAGTGGTCCCAAACATTAGCAAGATGGATAAAGCTTCAATTATTAAGGATGCTATTGAGTACATAAAGCACTTGCATGAACAAGAGAAGATTATTCAAGCTGAGATAATGGAACTTGAATCTGGGATGCCTAATAATATTAATCCAAATTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAGTTATATGATTCTGTCACTTCAAGAAACTTTCCAATTGAAGTCCTTGAGCTTAGGGTTACATACATGGGAGAGAATACAATGGTAGTGAGCTTGACATGTAACAAAAGGGCAGACACAATGGTGAAATTGTGTGAAGTTTTCGAATCTTTGAAGCTTAAAATTATTACTGCCAACATCACCTCTTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGCAAATGAGGAAGATAGAGATCTATTGCAAATGAAGATTCAAACAGCCATTGCAGCTCTTAATGACCCTCTAAGCCCTATGAGCATCTAA

Protein sequence

>MsaT008008.1

MENIGDEYKLYWETNMFLQTQELDSWGLDEAFSGYYDSSSPDGAASSGVSSKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIKHLHEQEKIIQAEIMELESGMPNNINPNYDFDQELPVLLRSKKKRTDQLYDSVTSRNFPIEVLELRVTYMGENTMVVSLTCNKRADTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANEEDRDLLQMKIQTAIAALNDPLSPMSI*