AlfalfaGEDB | MsaG008041

M. sativa ssp. caerulea / MsaG008041

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008041	XP_013463430.1	97.917	336	7	0	3	338	87	422	0.0	683

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008041	sp\|C0LGH2\|Y1561_ARATH	49.333	300	149	2	18	317	682	978	3.18e-97	312

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008041	A0A072VH51	97.917	336	7	0	3	338	87	422	0.0	683

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000253	MsaG008041	0.813154	5.089458e-51	9.392628e-49
MsaG003267	MsaG008041	0.805779	1.915864e-49	2.957756e-47
MsaG003727	MsaG008041	0.817548	5.422936e-52	1.118778e-49
MsaG004007	MsaG008041	0.818919	2.663247e-52	5.693002e-50
MsaG004619	MsaG008041	0.814206	2.993128e-51	5.671606e-49
MsaG005693	MsaG008041	0.812591	6.751386e-51	1.228646e-48
MsaG005836	MsaG008041	0.808595	4.884367e-50	8.063238e-48
MsaG007043	MsaG008041	0.808856	4.299307e-50	7.142290e-48
MsaG008013	MsaG008041	0.882240	2.618225e-70	5.248017e-67
MsaG008041	MsaG008042	0.978121	1.745774e-144	3.528903e-138

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008041	MtrunA17_Chr2g0299041	97.917	336	7	0	3	338	87	422	0.0	683
MsaG008041	MtrunA17_Chr4g0071371	81.627	332	61	0	3	334	109	440	0.0	567
MsaG008041	MtrunA17_Chr3g0109411	53.797	316	143	2	12	324	307	622	2.55e-109	332
MsaG008041	MtrunA17_Chr8g0358781	51.505	299	141	3	18	316	333	627	4.43e-108	330
MsaG008041	MtrunA17_Chr8g0358821	52.667	300	138	3	18	317	678	973	9.65e-108	337
MsaG008041	MtrunA17_Chr3g0109431	50.794	315	154	1	12	325	310	624	3.04e-106	324
MsaG008041	MtrunA17_Chr3g0109461	51.125	311	150	2	17	325	327	637	1.16e-101	313
MsaG008041	MtrunA17_Chr1g0160921	49.085	328	159	4	18	338	40	366	3.46e-100	301
MsaG008041	MtrunA17_Chr8g0376131	49.839	311	147	4	18	321	40	348	1.27e-98	297
MsaG008041	MtrunA17_Chr1g0154331	46.358	302	157	4	17	316	27	325	1.16e-97	293

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008041	AT1G56130.3	49.333	300	149	2	18	317	483	779	5.24e-100	313
MsaG008041	AT1G56130.1	49.333	300	149	2	18	317	534	830	1.94e-99	313
MsaG008041	AT1G56130.2	49.333	300	149	2	18	317	682	978	3.23e-98	312
MsaG008041	AT4G00970.1	50.329	304	146	3	17	316	331	633	3.31e-98	304
MsaG008041	AT1G56140.1	49.667	300	148	2	18	317	681	977	4.00e-98	312
MsaG008041	AT1G56120.3	47.134	314	163	2	18	331	532	842	1.69e-97	308
MsaG008041	AT4G00960.1	46.729	321	160	5	17	329	43	360	5.79e-97	292
MsaG008041	AT1G56120.2	47.134	314	163	2	18	331	680	990	3.47e-96	307
MsaG008041	AT1G56120.1	47.134	314	163	2	18	331	698	1008	4.25e-96	307
MsaG008041	AT1G56145.3	46.865	303	158	2	18	320	572	871	5.24e-96	304

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Find 72 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGTCACGACACCAATG+AGG	0.686665	2:-27026151	MsaT008041.1:CDS
AACTTAAAACTTACATATTC+AGG	0.214882	2:+27026621	None:intergenic
AAGGCATAAGAGAGCCACAT+GGG	0.661082	2:+27026238	None:intergenic
AAGGCTGATATCTATAGTTT+TGG	0.301862	2:-27026717	MsaT008041.1:CDS
AATCCATCTTGTTTCAGCTT+TGG	0.342598	2:+27026287	None:intergenic
ACAAGATGGATTTGTGGAAA+AGG	0.499171	2:-27026276	MsaT008041.1:CDS
ACATACAATGTTCCTGCAAA+CGG	0.512801	2:+27027070	None:intergenic
ACATTTGAGACCACGAATGT+CGG	0.617761	2:-27026204	MsaT008041.1:CDS
ACCACGAATGTCGGAAATTG+TGG	0.501495	2:-27026195	MsaT008041.1:CDS
ACGGTGTGCTAAGATAAGCT+TGG	0.655760	2:+27027089	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	27026073	27030729	27026073	ID=MsaG008041
Chr2	mRNA	27026073	27030729	27026073	ID=MsaT008041.1;Parent=MsaG008041
Chr2	exon	27026073	27026354	27026073	ID=MsaT008041.1.exon6;Parent=MsaT008041.1
Chr2	CDS	27026073	27026354	27026073	ID=cds.MsaT008041.1;Parent=MsaT008041.1
Chr2	exon	27026635	27026785	27026635	ID=MsaT008041.1.exon5;Parent=MsaT008041.1
Chr2	CDS	27026635	27026785	27026635	ID=cds.MsaT008041.1;Parent=MsaT008041.1
Chr2	exon	27027076	27027307	27027076	ID=MsaT008041.1.exon4;Parent=MsaT008041.1
Chr2	CDS	27027076	27027307	27027076	ID=cds.MsaT008041.1;Parent=MsaT008041.1
Chr2	exon	27028348	27028561	27028348	ID=MsaT008041.1.exon3;Parent=MsaT008041.1
Chr2	CDS	27028348	27028561	27028348	ID=cds.MsaT008041.1;Parent=MsaT008041.1
Chr2	exon	27028918	27029048	27028918	ID=MsaT008041.1.exon2;Parent=MsaT008041.1
Chr2	CDS	27028918	27029048	27028918	ID=cds.MsaT008041.1;Parent=MsaT008041.1
Chr2	exon	27030723	27030729	27030723	ID=MsaT008041.1.exon1;Parent=MsaT008041.1
Chr2	CDS	27030723	27030729	27030723	ID=cds.MsaT008041.1;Parent=MsaT008041.1

Gene Sequence

>MsaT008041.1

ATGGAGGGGTCAATGGAGTTCTTTAGTGGGAGCCTTCGGTCTATTAGCCACTTTGATTACCAGACATTGAGGAAGGCCACCAATAACTTTTTTCATGGAAACCTTCTTGGAAGTGGTGGATTTGGACCTGTATATAAGGGAAAGTTGGAAGATGGAAGGATCATTGCTGTTAAGGCATTGTCTCTAAACAAATCTCAACAAGGAGAAAGAGAATTTTTGGCTGAGGTTAAATTGATCACAAGTATCCAACACAAAAATTTGGTTCGCCTTCTTGGAAGTTGTATAGATGGTCCTCAAAGGATACTTATTTATGAATACATGAAAAACCGAAGTTTGGACCTCTTCATATATGGAAACAATGATCGATTTTTGAATTGGAGAACTAGGTATCAAATCATACTTGGAGTAGCACGTGGACTTCAATACCTTCATGAAGATTCGCACCTAAGAATTGTTCATAGAGATATCAAAGCAAGCAACATTCTTCTTGATGACAAGTTTTTGCCTAGAATTGGTGACTTTGGGCTAGCTAGATTTTTTCCAGAAGACCAAGCTTATCTTAGCACACCGTTTGCAGGAACATTAGGGTATACAGCTCCTGAATATGCTATTAGAGGGGAATTGTCAGAAAAGGCTGATATCTATAGTTTTGGAGTTCTCCTTCTTGAAATTATATGTTGCAGGAAAAATACAGATCATACTTTACCACCAGATATGCAGTACCTCCCTGAATATGCTTGGAAATTATACGAGAAATCAAGTTTATTAGATCTTGTTGATCCAAAGCTGAAACAAGATGGATTTGTGGAAAAGGATGTTATGCAAGCAACCCATGTGGCTCTCTTATGCCTTCAACCTCATGCACATTTGAGACCACGAATGTCGGAAATTGTGGCATTGTTGACATTCAAAATTGAAATGGTCACGACACCAATGAGGCCAGCCTTCCTTGATCGAAGGCCAAGGAAGGATGAAGATAATCATTCTTTTGAAGTAACATCTATGGCAAGCCACTAA

Protein sequence

>MsaT008041.1

MEGSMEFFSGSLRSISHFDYQTLRKATNNFFHGNLLGSGGFGPVYKGKLEDGRIIAVKALSLNKSQQGEREFLAEVKLITSIQHKNLVRLLGSCIDGPQRILIYEYMKNRSLDLFIYGNNDRFLNWRTRYQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDDKFLPRIGDFGLARFFPEDQAYLSTPFAGTLGYTAPEYAIRGELSEKADIYSFGVLLLEIICCRKNTDHTLPPDMQYLPEYAWKLYEKSSLLDLVDPKLKQDGFVEKDVMQATHVALLCLQPHAHLRPRMSEIVALLTFKIEMVTTPMRPAFLDRRPRKDEDNHSFEVTSMASH*