AlfalfaGEDB | MsaG008048

M. sativa ssp. caerulea / MsaG008048

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010182 GO:0010187 GO:0010255 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033500 GO:0033993 GO:0034284 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0042593 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008048	AES65386.1	91.246	297	26	0	1	297	1	297	9.04e-175	495

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008048	sp\|Q9SZI6\|GAT22_ARATH	35.714	294	141	10	44	291	61	352	1.34e-25	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008048	G7IIE3	91.246	297	26	0	1	297	1	297	4.32e-175	495

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TFs/TRs:

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Gene ID	Type	Classification
MsaG008048	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000722	MsaG008048	0.801952	1.185087e-48	1.674643e-46
MsaG008048	MsaG045643	0.800337	2.526081e-48	3.441464e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008048	MtrunA17_Chr2g0299081	91.246	297	26	0	1	297	6	302	1.16e-178	494
MsaG008048	MtrunA17_Chr4g0071301	43.807	331	137	16	3	291	10	333	8.20e-48	162
MsaG008048	MtrunA17_Chr1g0151461	62.195	82	25	2	147	228	170	245	9.95e-26	103
MsaG008048	MtrunA17_Chr4g0068031	62.000	50	19	0	159	208	25	74	2.43e-17	77.4
MsaG008048	MtrunA17_Chr7g0271861	75.000	36	9	0	164	199	22	57	3.78e-14	68.2
MsaG008048	MtrunA17_Chr5g0404131	59.615	52	21	0	149	200	177	228	2.81e-13	68.9
MsaG008048	MtrunA17_Chr1g0213161	64.865	37	13	0	163	199	151	187	8.59e-12	63.9
MsaG008048	MtrunA17_Chr8g0373231	65.789	38	13	0	163	200	124	161	5.17e-11	61.6
MsaG008048	MtrunA17_Chr1g0146231	42.647	68	38	1	164	230	234	301	6.54e-11	62.4
MsaG008048	MtrunA17_Chr2g0326771	33.333	117	52	2	117	232	194	285	8.15e-11	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008048	AT4G26150.1	35.714	294	141	10	44	291	61	352	1.36e-26	107
MsaG008048	AT5G56860.1	36.318	201	79	11	46	197	63	263	6.30e-19	86.7
MsaG008048	AT5G49300.1	62.500	56	20	1	147	201	18	73	6.00e-18	79.0
MsaG008048	AT5G26930.1	73.171	41	11	0	161	201	23	63	2.04e-17	77.0
MsaG008048	AT3G06740.1	63.830	47	17	0	156	202	33	79	5.49e-15	71.2
MsaG008048	AT3G16870.1	68.293	41	13	0	161	201	39	79	2.29e-14	70.5
MsaG008048	AT4G16141.1	65.854	41	14	0	161	201	34	74	4.00e-14	70.1
MsaG008048	AT1G08010.2	42.857	84	47	1	147	229	203	286	1.76e-13	70.1
MsaG008048	AT1G08010.1	42.857	84	47	1	147	229	203	286	1.76e-13	70.1
MsaG008048	AT1G08010.3	42.857	84	47	1	147	229	203	286	1.76e-13	70.1

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Find 58 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTTAGCATTCATCAGA+AGG	0.570288	2:+27150944	None:intergenic
AAATGGTGAAACTCTTGTGG+TGG	0.679475	2:-27151203	MsaT008048.1:CDS
AACAAGTTGGAGCAACAACT+TGG	0.506773	2:-27151050	MsaT008048.1:CDS
AACTTCTTTCCCTTCACATA+TGG	0.359398	2:+27151172	None:intergenic
AAGACCCCTCTCTGGAGAAG+TGG	0.553472	2:-27151988	MsaT008048.1:CDS
AAGAGTTTCACCATTTGCAG+CGG	0.647090	2:+27151210	None:intergenic
AAGTGGACCAACTGGTCCCA+AGG	0.591915	2:-27151971	MsaT008048.1:intron
AATGTGCACCACAATTGAAA+AGG	0.511689	2:-27151117	MsaT008048.1:CDS
ACACAACTAAGACCCCTCTC+TGG	0.508622	2:-27151996	MsaT008048.1:CDS
ACCAAATCTAGTAAGAACTG+AGG	0.700207	2:-27152076	MsaT008048.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	27150949	27152752	27150949	ID=MsaG008048
Chr2	mRNA	27150949	27152752	27150949	ID=MsaT008048.1;Parent=MsaG008048
Chr2	exon	27150949	27151287	27150949	ID=MsaT008048.1.exon3;Parent=MsaT008048.1
Chr2	CDS	27150949	27151287	27150949	ID=cds.MsaT008048.1;Parent=MsaT008048.1
Chr2	exon	27151972	27152313	27151972	ID=MsaT008048.1.exon2;Parent=MsaT008048.1
Chr2	CDS	27151972	27152313	27151972	ID=cds.MsaT008048.1;Parent=MsaT008048.1
Chr2	exon	27152540	27152752	27152540	ID=MsaT008048.1.exon1;Parent=MsaT008048.1
Chr2	CDS	27152540	27152752	27152540	ID=cds.MsaT008048.1;Parent=MsaT008048.1

Gene Sequence

>MsaT008048.1

ATGATACCAACTTATCGTTATTCTGCATCTTCTCCTCCTATGCCTTTTTTTGATCTAAATAATGAAGATCACAGTCACCATCTCTTCAATACTAATCAACAAGCCACTTCTTCATCTTCTTCTCTATCATACTCTATACTCTTCAACCAAAATCAAGATCAAACAAGATCTTATTCTTGGGAGTCAAACCACATACTAAGTGATGGTGTAGAGGTTAAGAATTTTGTAACTTCTGGTGAATCATGGGATCATCAAGAAGTGAAAAAGGATGAAAAAGATTGGAAGAAAGAAGACGAGTATGAAAGTTTTATGGCTGAGGATAGAACTTCAATGAAGTTGATGCCATCAAAGAAGAGAATGATTAAGAGGATGATGGAAGATCAAAGGGCTTCTGAGCAAGAGTTTGAGACACAAATTAAGCAATTATCACCAAATCTAGTAAGAACTGAGGATAGTAGCAACAACAATTTTTCAAACAACAACACTGTTAGGGTTTGTACTGACTGCCACACAACTAAGACCCCTCTCTGGAGAAGTGGACCAACTGGTCCCAAGTCACTTTGCAATGCCTGCGGGATTCGACAAAGAAAAGCAAGACGCGCCCTTGCAGCCGCTGCAAATGGTGAAACTCTTGTGGTGGCAGAGAAACCATATGTGAAGGGAAAGAAGTTGCAAGTCAGAAGGAAAAGGTTAAAAACTGATCAATGTGCACCACAATTGAAAAGGAAGGGTAAAAGTGAAAACAAGTGTAATAATTTTGAAGATTTGATAACAAGTTGGAGCAACAACTTGGCTTCCCATCAAGTTTTCCCTCAAGATGTGAAGGAGGCTGCTATTCTACTCATGGCTTTATCTTCTGGCTTGCTTAATGGATTTCCTTCTGATGAATGCTAA

Protein sequence

>MsaT008048.1

MIPTYRYSASSPPMPFFDLNNEDHSHHLFNTNQQATSSSSSLSYSILFNQNQDQTRSYSWESNHILSDGVEVKNFVTSGESWDHQEVKKDEKDWKKEDEYESFMAEDRTSMKLMPSKKRMIKRMMEDQRASEQEFETQIKQLSPNLVRTEDSSNNNFSNNNTVRVCTDCHTTKTPLWRSGPTGPKSLCNACGIRQRKARRALAAAANGETLVVAEKPYVKGKKLQVRRKRLKTDQCAPQLKRKGKSENKCNNFEDLITSWSNNLASHQVFPQDVKEAAILLMALSSGLLNGFPSDEC*