Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008091 | XP_003595230.1 | 95.127 | 472 | 11 | 3 | 1 | 461 | 1 | 471 | 0.0 | 919 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008091 | sp|P42158|CKL1_ARATH | 67.457 | 464 | 124 | 5 | 1 | 456 | 1 | 445 | 0.0 | 635 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008091 | A2Q686 | 95.127 | 472 | 11 | 3 | 1 | 461 | 1 | 471 | 0.0 | 919 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008091 | MtrunA17_Chr2g0299661 | 95.127 | 472 | 11 | 3 | 1 | 461 | 1 | 471 | 0.0 | 919 |
MsaG008091 | MtrunA17_Chr4g0071031 | 75.914 | 465 | 86 | 6 | 1 | 456 | 1 | 448 | 0.0 | 688 |
MsaG008091 | MtrunA17_Chr2g0329981 | 69.362 | 470 | 130 | 5 | 1 | 456 | 1 | 470 | 0.0 | 661 |
MsaG008091 | MtrunA17_Chr8g0342821 | 68.511 | 470 | 133 | 6 | 1 | 456 | 1 | 469 | 0.0 | 636 |
MsaG008091 | MtrunA17_Chr1g0166821 | 72.555 | 317 | 79 | 2 | 1 | 309 | 2 | 318 | 1.41e-173 | 494 |
MsaG008091 | MtrunA17_Chr1g0183631 | 53.459 | 477 | 176 | 9 | 1 | 455 | 1 | 453 | 1.49e-173 | 494 |
MsaG008091 | MtrunA17_Chr7g0261501 | 65.527 | 351 | 105 | 4 | 1 | 340 | 1 | 346 | 5.43e-171 | 488 |
MsaG008091 | MtrunA17_Chr1g0187571 | 72.391 | 297 | 76 | 1 | 1 | 291 | 2 | 298 | 1.28e-167 | 480 |
MsaG008091 | MtrunA17_Chr8g0390211 | 57.143 | 434 | 163 | 6 | 1 | 422 | 1 | 423 | 1.34e-166 | 476 |
MsaG008091 | MtrunA17_Chr6g0486611 | 55.605 | 446 | 145 | 7 | 1 | 438 | 1 | 401 | 1.45e-165 | 473 |
MsaG008091 | MtrunA17_Chr1g0146151 | 55.392 | 408 | 153 | 5 | 1 | 379 | 1 | 408 | 4.86e-159 | 456 |
MsaG008091 | MtrunA17_Chr3g0140071 | 58.115 | 382 | 143 | 5 | 1 | 375 | 1 | 372 | 4.77e-156 | 449 |
MsaG008091 | MtrunA17_Chr1g0167261 | 66.447 | 304 | 94 | 2 | 1 | 296 | 2 | 305 | 1.34e-151 | 434 |
MsaG008091 | MtrunA17_Chr7g0214531 | 36.786 | 280 | 160 | 5 | 9 | 271 | 37 | 316 | 2.58e-56 | 196 |
MsaG008091 | MtrunA17_Chr3g0140431 | 38.148 | 270 | 156 | 5 | 9 | 267 | 38 | 307 | 3.55e-55 | 193 |
MsaG008091 | MtrunA17_Chr1g0146301 | 37.407 | 270 | 158 | 5 | 9 | 267 | 124 | 393 | 3.76e-54 | 192 |
MsaG008091 | MtrunA17_Chr1g0213321 | 36.364 | 275 | 163 | 5 | 9 | 271 | 119 | 393 | 1.05e-52 | 188 |
MsaG008091 | MtrunA17_Chr7g0253211 | 36.491 | 285 | 163 | 6 | 4 | 270 | 317 | 601 | 7.65e-52 | 187 |
MsaG008091 | MtrunA17_Chr8g0340491 | 35.842 | 279 | 157 | 7 | 9 | 267 | 128 | 404 | 1.24e-47 | 174 |
MsaG008091 | MtrunA17_Chr5g0405421 | 25.792 | 221 | 144 | 7 | 2 | 213 | 92 | 301 | 1.61e-13 | 72.8 |
MsaG008091 | MtrunA17_Chr7g0245031 | 29.185 | 233 | 143 | 11 | 3 | 227 | 141 | 359 | 2.59e-13 | 71.6 |
MsaG008091 | MtrunA17_Chr3g0107011 | 28.750 | 240 | 146 | 9 | 8 | 238 | 13 | 236 | 1.13e-12 | 69.7 |
MsaG008091 | MtrunA17_Chr5g0432471 | 28.788 | 264 | 154 | 13 | 8 | 259 | 11 | 252 | 2.16e-12 | 68.9 |
MsaG008091 | MtrunA17_Chr1g0205931 | 26.364 | 220 | 135 | 8 | 8 | 213 | 54 | 260 | 5.45e-12 | 68.2 |
MsaG008091 | MtrunA17_Chr2g0333821 | 29.091 | 220 | 130 | 10 | 7 | 215 | 12 | 216 | 5.50e-12 | 67.4 |
MsaG008091 | MtrunA17_Chr7g0274941 | 24.766 | 214 | 145 | 5 | 8 | 215 | 15 | 218 | 9.58e-12 | 65.9 |
MsaG008091 | MtrunA17_Chr1g0203881 | 25.207 | 242 | 157 | 8 | 7 | 241 | 39 | 263 | 1.35e-11 | 66.6 |
MsaG008091 | MtrunA17_Chr3g0127571 | 28.870 | 239 | 127 | 12 | 3 | 221 | 132 | 347 | 1.57e-11 | 66.6 |
MsaG008091 | MtrunA17_Chr8g0387671 | 31.628 | 215 | 123 | 10 | 9 | 213 | 66 | 266 | 1.97e-11 | 65.9 |
MsaG008091 | MtrunA17_Chr8g0374701 | 26.446 | 242 | 132 | 9 | 3 | 221 | 119 | 337 | 5.80e-11 | 64.7 |
MsaG008091 | MtrunA17_Chr1g0173541 | 26.638 | 229 | 128 | 9 | 3 | 213 | 46 | 252 | 6.84e-11 | 64.3 |
MsaG008091 | MtrunA17_Chr3g0140631 | 25.957 | 235 | 144 | 10 | 3 | 228 | 31 | 244 | 9.53e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008091 | AT4G26100.1 | 67.457 | 464 | 124 | 5 | 1 | 456 | 1 | 445 | 0.0 | 635 |
MsaG008091 | AT1G72710.1 | 66.030 | 471 | 133 | 7 | 1 | 452 | 1 | 463 | 0.0 | 603 |
MsaG008091 | AT5G57015.1 | 64.744 | 468 | 124 | 7 | 1 | 461 | 1 | 434 | 0.0 | 603 |
MsaG008091 | AT2G19470.1 | 58.422 | 469 | 122 | 5 | 1 | 456 | 1 | 409 | 0.0 | 537 |
MsaG008091 | AT3G23340.1 | 68.598 | 328 | 91 | 2 | 1 | 322 | 1 | 322 | 1.01e-172 | 492 |
MsaG008091 | AT5G44100.1 | 65.616 | 349 | 113 | 2 | 1 | 342 | 1 | 349 | 2.39e-172 | 493 |
MsaG008091 | AT5G44100.2 | 65.616 | 349 | 113 | 2 | 1 | 342 | 1 | 349 | 2.39e-172 | 493 |
MsaG008091 | AT1G03930.1 | 57.589 | 448 | 157 | 8 | 1 | 423 | 1 | 440 | 3.18e-172 | 492 |
MsaG008091 | AT1G04440.1 | 61.780 | 382 | 123 | 4 | 1 | 359 | 1 | 382 | 7.63e-170 | 486 |
MsaG008091 | AT5G43320.1 | 53.731 | 469 | 173 | 8 | 1 | 440 | 1 | 454 | 1.90e-166 | 478 |
MsaG008091 | AT4G14340.1 | 57.933 | 416 | 146 | 6 | 1 | 390 | 7 | 419 | 1.95e-166 | 477 |
MsaG008091 | AT4G28860.2 | 64.205 | 352 | 116 | 3 | 1 | 346 | 1 | 348 | 3.50e-166 | 473 |
MsaG008091 | AT4G28860.1 | 58.416 | 404 | 155 | 4 | 1 | 395 | 1 | 400 | 4.90e-166 | 474 |
MsaG008091 | AT4G28540.1 | 57.673 | 404 | 148 | 6 | 1 | 390 | 5 | 399 | 7.85e-166 | 476 |
MsaG008091 | AT4G14340.2 | 67.273 | 330 | 99 | 3 | 1 | 324 | 7 | 333 | 1.20e-165 | 471 |
MsaG008091 | AT4G28880.3 | 59.057 | 403 | 145 | 6 | 1 | 390 | 1 | 396 | 2.44e-164 | 470 |
MsaG008091 | AT4G28880.2 | 59.057 | 403 | 145 | 6 | 1 | 390 | 1 | 396 | 2.44e-164 | 470 |
MsaG008091 | AT4G28880.1 | 59.057 | 403 | 145 | 6 | 1 | 390 | 1 | 396 | 2.44e-164 | 470 |
MsaG008091 | AT4G28880.4 | 59.057 | 403 | 145 | 6 | 1 | 390 | 1 | 396 | 2.44e-164 | 470 |
MsaG008091 | AT5G43320.2 | 71.717 | 297 | 78 | 1 | 1 | 291 | 1 | 297 | 8.93e-164 | 467 |
MsaG008091 | AT5G43320.3 | 71.717 | 297 | 78 | 1 | 1 | 291 | 1 | 297 | 8.93e-164 | 467 |
MsaG008091 | AT3G23340.2 | 68.506 | 308 | 85 | 2 | 21 | 322 | 7 | 308 | 6.70e-160 | 459 |
MsaG008091 | AT4G08800.1 | 65.306 | 294 | 64 | 3 | 1 | 288 | 1 | 262 | 3.56e-140 | 404 |
MsaG008091 | AT2G25760.2 | 37.631 | 287 | 156 | 6 | 4 | 267 | 100 | 386 | 1.75e-56 | 199 |
MsaG008091 | AT2G25760.1 | 37.676 | 284 | 157 | 6 | 4 | 267 | 100 | 383 | 4.07e-56 | 197 |
MsaG008091 | AT3G13670.1 | 36.071 | 280 | 162 | 5 | 9 | 271 | 137 | 416 | 1.13e-53 | 191 |
MsaG008091 | AT3G03940.1 | 37.063 | 286 | 162 | 6 | 4 | 271 | 133 | 418 | 2.34e-53 | 190 |
MsaG008091 | AT5G18190.2 | 36.713 | 286 | 163 | 6 | 4 | 271 | 123 | 408 | 4.38e-53 | 189 |
MsaG008091 | AT5G18190.1 | 36.713 | 286 | 163 | 6 | 4 | 271 | 123 | 408 | 4.38e-53 | 189 |
MsaG008091 | AT2G25090.1 | 29.183 | 257 | 143 | 13 | 7 | 246 | 13 | 247 | 5.35e-12 | 68.2 |
MsaG008091 | AT1G12580.1 | 24.891 | 229 | 151 | 7 | 7 | 228 | 42 | 256 | 1.10e-11 | 67.4 |
MsaG008091 | AT2G17890.1 | 24.766 | 214 | 145 | 7 | 7 | 213 | 106 | 310 | 1.35e-11 | 67.0 |
MsaG008091 | AT1G61950.1 | 25.085 | 295 | 194 | 12 | 5 | 287 | 94 | 373 | 2.02e-11 | 66.6 |
MsaG008091 | AT3G06030.1 | 26.818 | 220 | 134 | 9 | 8 | 213 | 67 | 273 | 2.33e-11 | 66.6 |
MsaG008091 | AT5G58380.1 | 30.000 | 220 | 126 | 11 | 7 | 214 | 10 | 213 | 2.72e-11 | 65.9 |
MsaG008091 | AT2G25880.4 | 25.738 | 237 | 148 | 9 | 2 | 230 | 31 | 247 | 3.86e-11 | 64.3 |
MsaG008091 | AT2G25880.1 | 25.738 | 237 | 148 | 9 | 2 | 230 | 18 | 234 | 3.88e-11 | 64.3 |
MsaG008091 | AT5G25110.1 | 27.679 | 224 | 134 | 10 | 3 | 214 | 37 | 244 | 4.34e-11 | 65.5 |
MsaG008091 | AT4G23650.1 | 30.531 | 226 | 115 | 12 | 9 | 215 | 78 | 280 | 4.47e-11 | 65.5 |
MsaG008091 | AT2G25880.3 | 25.738 | 237 | 148 | 9 | 2 | 230 | 79 | 295 | 6.26e-11 | 64.3 |
MsaG008091 | AT1G50240.3 | 27.869 | 244 | 150 | 8 | 9 | 246 | 6 | 229 | 8.82e-11 | 65.1 |
MsaG008091 | AT1G50240.2 | 27.869 | 244 | 150 | 8 | 9 | 246 | 6 | 229 | 8.82e-11 | 65.1 |
MsaG008091 | AT1G62400.1 | 25.177 | 282 | 177 | 9 | 11 | 276 | 88 | 351 | 9.66e-11 | 63.9 |
Find 108 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTCCAAACCATTTAATATT+TGG | 0.121812 | 2:-28030174 | None:intergenic |
CTGGGATTCCAAATATTAAA+TGG | 0.220549 | 2:+28030166 | MsaT008091.1:CDS |
AATATTTACAGAATTTAAAA+TGG | 0.232763 | 2:-28033970 | None:intergenic |
TCATTCGGAGAGATCTATTT+AGG | 0.249141 | 2:+28027208 | MsaT008091.1:CDS |
TCCATTATTGCCGGTCATTA+AGG | 0.259862 | 2:+28032569 | MsaT008091.1:CDS |
TAGGTTTACTGTATTGATTT+TGG | 0.282532 | 2:+28030602 | MsaT008091.1:intron |
ACCTTAATGACCGGCAATAA+TGG | 0.283364 | 2:-28032570 | None:intergenic |
CTTAATGCTGGAACTAGTTC+TGG | 0.302221 | 2:+28032955 | MsaT008091.1:CDS |
ATTCCAAATATTAAATGGTT+TGG | 0.317069 | 2:+28030171 | MsaT008091.1:CDS |
CCCATCAACACATTCCTTAC+AGG | 0.339922 | 2:+28030654 | MsaT008091.1:CDS |
CTAGAAGATGTTACTCTCCT+TGG | 0.347085 | 2:-28034292 | None:intergenic |
AGGGAAGAAGGGCGTCATTC+TGG | 0.376963 | 2:+28033906 | MsaT008091.1:CDS |
ATGTCTTGATGTACTTCCTC+AGG | 0.377055 | 2:+28032233 | MsaT008091.1:CDS |
GATAATTTCCTCATGGGCTT+GGG | 0.378614 | 2:+28030479 | MsaT008091.1:CDS |
AGATAATTTCCTCATGGGCT+TGG | 0.386906 | 2:+28030478 | MsaT008091.1:CDS |
AGTCTGATTACATCTTTGAT+TGG | 0.394143 | 2:+28032793 | MsaT008091.1:CDS |
AGCAGTAGCCGCAATGCATT+TGG | 0.394778 | 2:+28034166 | MsaT008091.1:CDS |
GGTCATTAAGGTTTGATGAT+AGG | 0.395299 | 2:+28032581 | MsaT008091.1:CDS |
AAGCCCATGAGGAAATTATC+TGG | 0.401745 | 2:-28030476 | None:intergenic |
TTTGAATGGAACGTCGCGTT+GGG | 0.404069 | 2:+28027149 | None:intergenic |
CATCATACTTCCATTATTGC+CGG | 0.415822 | 2:+28032560 | MsaT008091.1:CDS |
TCAAACCTTCACGAATAAAC+AGG | 0.424318 | 2:-28032639 | None:intergenic |
TCTTCGAGGCGAAGAATGTC+GGG | 0.429913 | 2:+28033945 | MsaT008091.1:CDS |
AAATGGGAAGAAATTATTGA+TGG | 0.442997 | 2:-28034390 | None:intergenic |
CTTGGGAAAGCGGGAAAACC+AGG | 0.448025 | 2:+28030496 | MsaT008091.1:CDS |
ATTCTAAATCGCTTCTCCAC+CGG | 0.454371 | 2:+28030444 | MsaT008091.1:CDS |
TTATCAAGTGCCAATGTCTT+GGG | 0.459266 | 2:+28034112 | MsaT008091.1:CDS |
TTCTGGAATCCCTCCTCCTA+TGG | 0.464563 | 2:+28032972 | MsaT008091.1:CDS |
GTTATCAAGTGCCAATGTCT+TGG | 0.467601 | 2:+28034111 | MsaT008091.1:intron |
TTCTAAATCGCTTCTCCACC+GGG | 0.469845 | 2:+28030445 | MsaT008091.1:CDS |
AAGATCGGTAGTGGCTCATT+CGG | 0.470396 | 2:+28027193 | MsaT008091.1:CDS |
TTGTCCACTTGAATGTATGA+TGG | 0.472205 | 2:-28034242 | None:intergenic |
ATATGCAGTCTTCCTTGGCA+AGG | 0.473214 | 2:+28032352 | MsaT008091.1:intron |
CCTCATGGGCTTGGGAAAGC+GGG | 0.474186 | 2:+28030487 | MsaT008091.1:CDS |
AGTGGATCAAGGCGACTTCA+TGG | 0.475207 | 2:+28034142 | MsaT008091.1:CDS |
TCTCATGCTTGCTGAGCAAA+TGG | 0.476304 | 2:+28030293 | MsaT008091.1:CDS |
GTTACTCTCCTTGGATCTAA+AGG | 0.477041 | 2:-28034283 | None:intergenic |
CGGTCCTAGTGATGCTGCTA+TGG | 0.477310 | 2:+28034010 | MsaT008091.1:CDS |
ATATTTACAGAATTTAAAAT+GGG | 0.479156 | 2:-28033969 | None:intergenic |
CTCTTCGAGGCGAAGAATGT+CGG | 0.480239 | 2:+28033944 | MsaT008091.1:CDS |
ACCTGTAAGGAATGTGTTGA+TGG | 0.480755 | 2:-28030655 | None:intergenic |
AATCTTACAGGAAGGGAAGA+AGG | 0.485014 | 2:+28033894 | MsaT008091.1:intron |
CGAGAAAATCAGTGAAAAGA+AGG | 0.488049 | 2:+28032405 | MsaT008091.1:CDS |
AGTAGCCGCAATGCATTTGG+CGG | 0.491190 | 2:+28034169 | MsaT008091.1:CDS |
TATTAAATGGTTTGGAGTGG+AGG | 0.500434 | 2:+28030179 | MsaT008091.1:CDS |
AATTATCTGGTTTAATATCC+CGG | 0.500662 | 2:-28030463 | None:intergenic |
GAATTATGAAACTGCACTCA+AGG | 0.502622 | 2:+28034333 | MsaT008091.1:CDS |
CGTGCTACTGAAGATATCAA+TGG | 0.508424 | 2:+28034214 | MsaT008091.1:CDS |
ACTAAATCATCATACCTGTA+AGG | 0.509141 | 2:-28030668 | None:intergenic |
TATGCAGTCTTCCTTGGCAA+GGG | 0.512407 | 2:+28032353 | MsaT008091.1:intron |
AAACCAGATAATTTCCTCAT+GGG | 0.512524 | 2:+28030473 | MsaT008091.1:CDS |
CGAGACCTGTTTATTCGTGA+AGG | 0.514655 | 2:+28032634 | MsaT008091.1:CDS |
TAAACCAGATAATTTCCTCA+TGG | 0.520433 | 2:+28030472 | MsaT008091.1:CDS |
AGAGATGATTTAGAGTCTGT+TGG | 0.523766 | 2:+28032208 | MsaT008091.1:CDS |
TCCTCATGGGCTTGGGAAAG+CGG | 0.524897 | 2:+28030486 | MsaT008091.1:CDS |
ATGAATACCCACCTTGGCAT+TGG | 0.525454 | 2:+28032067 | MsaT008091.1:CDS |
ATTAAATGGTTTGGAGTGGA+GGG | 0.526860 | 2:+28030180 | MsaT008091.1:CDS |
TGGTTTCAGTAAACTCTTCG+AGG | 0.527254 | 2:+28033931 | MsaT008091.1:CDS |
AATCAAAGATGTAATCAGAC+TGG | 0.530027 | 2:-28032791 | None:intergenic |
TTGCAGCATTCTGTACAACT+TGG | 0.530609 | 2:-28030004 | None:intergenic |
AGAAGGGCGTCATTCTGGTA+TGG | 0.534265 | 2:+28033911 | MsaT008091.1:CDS |
TTTCGTGTTGGTCGTAAGAT+CGG | 0.535668 | 2:+28027178 | MsaT008091.1:CDS |
CATAGCAGCATCACTAGGAC+CGG | 0.537671 | 2:-28034009 | None:intergenic |
AATGGGAAGAAATTATTGAT+GGG | 0.543960 | 2:-28034389 | None:intergenic |
TTAGCATTAGCCATAGGAGG+AGG | 0.547414 | 2:-28032982 | None:intergenic |
GTTGGTCGTAAGATCGGTAG+TGG | 0.549271 | 2:+28027184 | MsaT008091.1:CDS |
GTTGGGAATAAGTTTCGTGT+TGG | 0.550273 | 2:+28027166 | MsaT008091.1:CDS |
AAATATTAAATGGTTTGGAG+TGG | 0.550968 | 2:+28030176 | MsaT008091.1:CDS |
TGTCTTGATGTACTTCCTCA+GGG | 0.554527 | 2:+28032234 | MsaT008091.1:CDS |
TGGGCGAGTCGAGTGGATCA+AGG | 0.557536 | 2:+28034131 | MsaT008091.1:CDS |
ACTCGACTCGCCCAAGACAT+TGG | 0.558346 | 2:-28034122 | None:intergenic |
AGATTACAATGTTCTAGTAA+TGG | 0.562002 | 2:+28030203 | MsaT008091.1:CDS |
GTTCTAGTAATGGATCTGCT+TGG | 0.563049 | 2:+28030213 | MsaT008091.1:CDS |
CTTACCATAGCAGCATCACT+AGG | 0.567272 | 2:-28034014 | None:intergenic |
ATCTTACAGGAAGGGAAGAA+GGG | 0.569393 | 2:+28033895 | MsaT008091.1:intron |
TATCATCAAACCTTAATGAC+CGG | 0.570464 | 2:-28032579 | None:intergenic |
CGTATATACCAATGCCAAGG+TGG | 0.570539 | 2:-28032075 | None:intergenic |
AATGTCTTGGGCGAGTCGAG+TGG | 0.571566 | 2:+28034124 | MsaT008091.1:CDS |
ACTGCACTCAAGGGCATCGA+GGG | 0.574371 | 2:+28034343 | MsaT008091.1:CDS |
CGTGCTTGAAGCCCTTGCCA+AGG | 0.576416 | 2:-28032364 | None:intergenic |
GGACAAAGAATTTCACAAAG+TGG | 0.577161 | 2:+28034259 | MsaT008091.1:CDS |
AAGTATGATGCAAACTCTGT+TGG | 0.578562 | 2:-28032547 | None:intergenic |
TTAAACATCTCTTCAAGACT+AGG | 0.585069 | 2:-28030237 | None:intergenic |
CCACTTACGATAGCACGTGC+TGG | 0.587245 | 2:-28032855 | None:intergenic |
CCCGCTTTCCCAAGCCCATG+AGG | 0.590879 | 2:-28030487 | None:intergenic |
GTATTCCAGGCCTTGTGTCG+AGG | 0.592620 | 2:+28032520 | MsaT008091.1:intron |
AAAGTGGACCTTTAGATCCA+AGG | 0.597314 | 2:+28034275 | MsaT008091.1:CDS |
CTATTAGCATTAGCCATAGG+AGG | 0.600375 | 2:-28032985 | None:intergenic |
TGTCTATTAGCATTAGCCAT+AGG | 0.601763 | 2:-28032988 | None:intergenic |
AATTATGAAACTGCACTCAA+GGG | 0.603669 | 2:+28034334 | MsaT008091.1:CDS |
TAGCATTAGCCATAGGAGGA+GGG | 0.608106 | 2:-28032981 | None:intergenic |
TGATGTACTTCCTCAGGGGA+AGG | 0.612571 | 2:+28032239 | MsaT008091.1:CDS |
AAAGCCATCATACATTCAAG+TGG | 0.637895 | 2:+28034238 | MsaT008091.1:CDS |
TGTTGGATAACCTCGACACA+AGG | 0.638443 | 2:-28032530 | None:intergenic |
GTATATACCAATGCCAAGGT+GGG | 0.649447 | 2:-28032074 | None:intergenic |
GCTAGCATGAATACCCACCT+TGG | 0.649536 | 2:+28032061 | MsaT008091.1:CDS |
AACTGCACTCAAGGGCATCG+AGG | 0.650556 | 2:+28034342 | MsaT008091.1:CDS |
GATCGTATATACCAATGCCA+AGG | 0.650591 | 2:-28032078 | None:intergenic |
GCTAATGCTAATAGACACAC+AGG | 0.661257 | 2:+28032994 | MsaT008091.1:CDS |
CAGCACCGCCAAATGCATTG+CGG | 0.663018 | 2:-28034174 | None:intergenic |
TTGGACTCATACAGCAACTG+AGG | 0.668956 | 2:-28029985 | None:intergenic |
CCTGTAAGGAATGTGTTGAT+GGG | 0.670053 | 2:-28030654 | None:intergenic |
GTCTTGATGTACTTCCTCAG+GGG | 0.674830 | 2:+28032235 | MsaT008091.1:CDS |
CTTACGATAGCACGTGCTGG+AGG | 0.677704 | 2:-28032852 | None:intergenic |
ATAGCAGCATCACTAGGACC+GGG | 0.681805 | 2:-28034008 | None:intergenic |
AAGTTGTACAGAATGCTGCA+AGG | 0.682633 | 2:+28030006 | MsaT008091.1:CDS |
GTAATAATCACCTTCCCCTG+AGG | 0.710232 | 2:-28032249 | None:intergenic |
TATCTGGTTTAATATCCCGG+TGG | 0.734033 | 2:-28030460 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 28027154 | 28034399 | 28027154 | ID=MsaG008091 |
Chr2 | mRNA | 28027154 | 28034399 | 28027154 | ID=MsaT008091.1;Parent=MsaG008091 |
Chr2 | exon | 28027154 | 28027229 | 28027154 | ID=MsaT008091.1.exon1;Parent=MsaT008091.1 |
Chr2 | CDS | 28027154 | 28027229 | 28027154 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28027342 | 28027382 | 28027342 | ID=MsaT008091.1.exon2;Parent=MsaT008091.1 |
Chr2 | CDS | 28027342 | 28027382 | 28027342 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28029964 | 28030033 | 28029964 | ID=MsaT008091.1.exon3;Parent=MsaT008091.1 |
Chr2 | CDS | 28029964 | 28030033 | 28029964 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28030166 | 28030314 | 28030166 | ID=MsaT008091.1.exon4;Parent=MsaT008091.1 |
Chr2 | CDS | 28030166 | 28030314 | 28030166 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28030422 | 28030517 | 28030422 | ID=MsaT008091.1.exon5;Parent=MsaT008091.1 |
Chr2 | CDS | 28030422 | 28030517 | 28030422 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28030605 | 28030675 | 28030605 | ID=MsaT008091.1.exon6;Parent=MsaT008091.1 |
Chr2 | CDS | 28030605 | 28030675 | 28030605 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28032027 | 28032088 | 28032027 | ID=MsaT008091.1.exon7;Parent=MsaT008091.1 |
Chr2 | CDS | 28032027 | 28032088 | 28032027 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28032197 | 28032260 | 28032197 | ID=MsaT008091.1.exon8;Parent=MsaT008091.1 |
Chr2 | CDS | 28032197 | 28032260 | 28032197 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28032360 | 28032426 | 28032360 | ID=MsaT008091.1.exon9;Parent=MsaT008091.1 |
Chr2 | CDS | 28032360 | 28032426 | 28032360 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28032529 | 28032655 | 28032529 | ID=MsaT008091.1.exon10;Parent=MsaT008091.1 |
Chr2 | CDS | 28032529 | 28032655 | 28032529 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28032787 | 28032869 | 28032787 | ID=MsaT008091.1.exon11;Parent=MsaT008091.1 |
Chr2 | CDS | 28032787 | 28032869 | 28032787 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28032952 | 28033015 | 28032952 | ID=MsaT008091.1.exon12;Parent=MsaT008091.1 |
Chr2 | CDS | 28032952 | 28033015 | 28032952 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28033904 | 28034031 | 28033904 | ID=MsaT008091.1.exon13;Parent=MsaT008091.1 |
Chr2 | CDS | 28033904 | 28034031 | 28033904 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Chr2 | exon | 28034112 | 28034399 | 28034112 | ID=MsaT008091.1.exon14;Parent=MsaT008091.1 |
Chr2 | CDS | 28034112 | 28034399 | 28034112 | ID=cds.MsaT008091.1;Parent=MsaT008091.1 |
Gene Sequence |
Protein sequence |