AlfalfaGEDB | MsaG008237

M. sativa ssp. caerulea / MsaG008237

KEGG: K14486
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008237	XP_013463581.1	96.561	1134	18	4	1	1133	1	1114	0.0	2217

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008237	sp\|Q8RYC8\|ARFS_ARATH	80.769	494	90	4	1	493	1	490	0.0	818

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008237	A0A072V7K3	96.561	1134	18	4	1	1133	1	1114	0.0	2217

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TFs/TRs:

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Gene ID	Type	Classification
MsaG008237	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG008237	0.814656	2.383452e-51	4.567498e-49
MsaG000045	MsaG008237	0.835013	3.912402e-56	1.311077e-53
MsaG000107	MsaG008237	0.804363	3.778192e-49	5.644074e-47
MsaG000180	MsaG008237	0.822193	4.756010e-53	1.108647e-50
MsaG000250	MsaG008237	0.828640	1.438677e-54	4.005593e-52
MsaG000359	MsaG008237	0.812992	5.519774e-51	1.014588e-48
MsaG000368	MsaG008237	0.811523	1.150906e-50	2.039928e-48
MsaG000419	MsaG008237	0.889484	5.099147e-73	1.463083e-69
MsaG000435	MsaG008237	0.840057	2.020329e-57	7.901076e-55
MsaG000439	MsaG008237	0.816440	9.588996e-52	1.922613e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008237	MtrunA17_Chr2g0301251	96.561	1134	18	4	1	1133	1	1114	0.0	2217
MsaG008237	MtrunA17_Chr4g0070181	78.549	648	103	10	1	629	1	631	0.0	937
MsaG008237	MtrunA17_Chr8g0389081	62.544	566	184	11	15	563	21	575	0.0	597
MsaG008237	MtrunA17_Chr8g0389081	43.360	369	160	19	793	1118	735	1097	8.65e-58	218
MsaG008237	MtrunA17_Chr2g0285461	59.470	491	162	13	14	490	14	481	2.22e-178	546
MsaG008237	MtrunA17_Chr8g0376771	64.319	426	141	8	1	420	1	421	5.53e-175	538
MsaG008237	MtrunA17_Chr8g0376771	40.385	208	97	7	896	1097	687	873	1.24e-32	137
MsaG008237	MtrunA17_Chr5g0433301	62.998	427	141	8	15	429	16	437	1.28e-174	535
MsaG008237	MtrunA17_Chr5g0433301	59.341	91	37	0	1007	1097	717	807	4.56e-30	128
MsaG008237	MtrunA17_Chr3g0109391	63.902	410	137	7	17	420	20	424	1.99e-173	531

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008237	AT1G19220.1	80.769	494	90	4	1	493	1	490	0.0	818
MsaG008237	AT5G20730.2	78.514	498	103	4	1	494	1	498	0.0	791
MsaG008237	AT5G20730.3	78.357	499	103	5	1	494	1	499	0.0	786
MsaG008237	AT5G20730.1	78.357	499	103	5	1	494	1	499	0.0	786
MsaG008237	AT5G37020.2	59.865	446	159	10	1	432	1	440	4.50e-170	521
MsaG008237	AT5G37020.2	57.333	75	32	0	999	1073	699	773	2.09e-23	107
MsaG008237	AT5G37020.1	59.865	446	159	10	1	432	1	440	3.91e-169	520
MsaG008237	AT5G37020.1	56.000	100	44	0	999	1098	699	798	3.35e-30	129
MsaG008237	AT1G19850.1	61.939	423	147	10	15	429	45	461	9.38e-166	514
MsaG008237	AT1G19850.1	50.327	153	67	4	954	1097	733	885	1.11e-34	144

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Find 254 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCCAGTATCGGCAAT+AGG	0.424122	2:-30900261	None:intergenic
AAAAGAATTCTGAGGGTTGT+TGG	0.430251	2:-30896599	None:intergenic
AAAGATACTATCATCTGCTG+AGG	0.674256	2:+30901321	MsaT008237.1:CDS
AACAAGCCGGTCTCTTACAG+CGG	0.618906	2:+30899200	MsaT008237.1:CDS
AACCACGAATAATCTGATGC+AGG	0.601852	2:+30899819	MsaT008237.1:CDS
AACTTGTTGTCTAATTATGG+CGG	0.625496	2:+30900135	MsaT008237.1:CDS
AAGAGAGCTATGCCATGGCT+TGG	0.516884	2:+30898479	MsaT008237.1:CDS
AAGAGGCATCTATTGACTAC+TGG	0.515402	2:+30896975	MsaT008237.1:CDS
AAGATCCTGTAAGGGTTGAC+TGG	0.472321	2:+30900803	MsaT008237.1:CDS
AAGATTTGCATGACACTACA+TGG	0.497978	2:+30896834	MsaT008237.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	30894802	30901477	30894802	ID=MsaG008237
Chr2	mRNA	30894802	30901477	30894802	ID=MsaT008237.1;Parent=MsaG008237
Chr2	exon	30894802	30894844	30894802	ID=MsaT008237.1.exon1;Parent=MsaT008237.1
Chr2	CDS	30894802	30894844	30894802	ID=cds.MsaT008237.1;Parent=MsaT008237.1
Chr2	exon	30895502	30895614	30895502	ID=MsaT008237.1.exon2;Parent=MsaT008237.1
Chr2	CDS	30895502	30895614	30895502	ID=cds.MsaT008237.1;Parent=MsaT008237.1
Chr2	exon	30895691	30895786	30895691	ID=MsaT008237.1.exon3;Parent=MsaT008237.1
Chr2	CDS	30895691	30895786	30895691	ID=cds.MsaT008237.1;Parent=MsaT008237.1
Chr2	exon	30896376	30896432	30896376	ID=MsaT008237.1.exon4;Parent=MsaT008237.1
Chr2	CDS	30896376	30896432	30896376	ID=cds.MsaT008237.1;Parent=MsaT008237.1
Chr2	exon	30896552	30896707	30896552	ID=MsaT008237.1.exon5;Parent=MsaT008237.1
Chr2	CDS	30896552	30896707	30896552	ID=cds.MsaT008237.1;Parent=MsaT008237.1
Chr2	exon	30896794	30896878	30896794	ID=MsaT008237.1.exon6;Parent=MsaT008237.1
Chr2	CDS	30896794	30896878	30896794	ID=cds.MsaT008237.1;Parent=MsaT008237.1
Chr2	exon	30896967	30897057	30896967	ID=MsaT008237.1.exon7;Parent=MsaT008237.1
Chr2	CDS	30896967	30897057	30896967	ID=cds.MsaT008237.1;Parent=MsaT008237.1
Chr2	exon	30897142	30897306	30897142	ID=MsaT008237.1.exon8;Parent=MsaT008237.1
Chr2	CDS	30897142	30897306	30897142	ID=cds.MsaT008237.1;Parent=MsaT008237.1
Chr2	exon	30897402	30897597	30897402	ID=MsaT008237.1.exon9;Parent=MsaT008237.1
Chr2	CDS	30897402	30897597	30897402	ID=cds.MsaT008237.1;Parent=MsaT008237.1
Chr2	exon	30898020	30898158	30898020	ID=MsaT008237.1.exon10;Parent=MsaT008237.1
Chr2	CDS	30898020	30898158	30898020	ID=cds.MsaT008237.1;Parent=MsaT008237.1
Chr2	exon	30898450	30900335	30898450	ID=MsaT008237.1.exon11;Parent=MsaT008237.1
Chr2	CDS	30898450	30900335	30898450	ID=cds.MsaT008237.1;Parent=MsaT008237.1
Chr2	exon	30900694	30900884	30900694	ID=MsaT008237.1.exon12;Parent=MsaT008237.1
Chr2	CDS	30900694	30900884	30900694	ID=cds.MsaT008237.1;Parent=MsaT008237.1
Chr2	exon	30901294	30901477	30901294	ID=MsaT008237.1.exon13;Parent=MsaT008237.1
Chr2	CDS	30901294	30901477	30901294	ID=cds.MsaT008237.1;Parent=MsaT008237.1

Gene Sequence

>MsaT008237.1

ATGAAGGCTCCTTCTAATGGTTACTTGGCTAATTCTGGTGAAGGTGAAAGGAAGACCATAAATTCAGAGTTATGGCATGCTTGTGCCGGGCCATTGGTTTCCATACCGCCTGTTGGAAGCCTTGTTGTTTACTTTCCTCAAGGACATAGTGAACAAGTTGCAGCATCTATGCAAAAGGAGGCAGACATCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATCTGTATGCTTCACAATGTTGCCCTGCATGCTGACCCTGAAACCGACGAGGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGCTGGCTTCAGACATGGGTCTCAAACAAAACCAACAACCCTCAGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACTAGCACTCACGGTGGATTTTCAGTGCCTCGTAGAGCTGCTGAGAAAATATTCCCACCTCTGGACTTCTCAATGCAACCGCCAGCTCAGGAAATAGTTGCCAAAGATTTGCATGACACTACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTCGTTAGCACAAAAAGGCTCTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTCTTAGGTATAAAGAGATCCAGTAGACAGCAACCAGCACTATCTTCATCGGTAATATCAAGTGACAGCATGCATATCGGCATTCTTGCTGCTGCGGCTCATGCTGCTTCGAATAACAGTCCATTTACTATATTTTATAATCCAAGGACTAGCCCCTGTGAATTTGTGATTCCATTGGCGAAGTATAATAAAGCTCTGTACACTCATGTTTCTCTCGGAATGAGATTCAGAATGATGTTTGAGACAGAGGATTCAGGAGTACGCAGATATATGGGCACAATCACTGGGATCAGTGACTTGGATCCTGTCCGCTGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGACGAATCAACAGCTGGTGAGCGCCCAAGTAGAGTTTCAATTTGGGACATTGAACCAGTTGTGACTCCTTTTTACATTTGTCCACCTCCGTTTTTTAGGCCGAAGTTCCCGAAGCAGCCAGGAATGCCAGAAGACGAGTCTGAAATCGAAAATGCATTCAAGAGAGCTATGCCATGGCTTGGAGATGAACTCGGCATGAAGGATACCTCAAGTTCAATCTTCCCTGGTTTGAGTTTAGTACAATGGATGAGTATGCAGCAGAATAATAATAATCAGTTTTCCGCTGCTCAATCAGGGCTTTTACCTCCATCCATGCTTTCGTCAAATGCGATGCATGGTAACCTTAGCACTGATGACCCATCCAAGATACTGAACTTTCAATCCTCTGCTGCACTCTCTGCTCCAAGTCTTCAATTTAATAAACCTAATTTACCGAACCAAGTCAATCAATTGCAACAGCCCCCGGCCTCTTGGTCTCAGCAACAGCAACAGCAGCAGAAGATGCAGTCGTTGTTGCCAATGCCGTTAAACCAGCTGCAGCAGCAGCAACAGCAGCAGAGGCAACAGCAGCTGGCTGGACCACAAAATCTGCCGCAGCCACAGCAGCAACAGCCTCAACTGACTCAACAGAATCCGCAGCAGCCTCAACAGCAGCAACAACACCAACAGCCTCAAAATACGACTATGAATAACGGCACAATTGGTTCTAACCAGATTCCGAATCAGTGTGTACAGCAACCAGTAAACTACTCTCAGCTTCAGCAACAGTTACTCTCAGGAAGTATCCAATCCCAACAAAATTTCCAATCAGCTGGCAAGAATGGATTGATAATGACATCCTTACCACAAGACTCGCAATTCCAGCAACAAATAGACCAACAACAAGCCGGTCTCTTACAGCGGCAGCAGCAACAGAATCAGTTGCAGCAATCTTCGTTACAGTTATTGCAACAAAGCATGTTGCAAAGGGCACCACAACAATCACAAATGTCTCAAATTTCGCCGCAAAACATCTCAGACCAACAGCAACAGTTGCAGTTGTTACAGAAGTTGCAACAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAACAGCAACAGCAACAGCAGCAGCAGCAACAGCAACAGCAACCACTTTCCACATCTTCCCCACTTTTGCAGTCTCAGCTTCTGCCGCAACAAAGCCAGCAATTACCTCAGCAGCCTATGTCCCAGCATCAGCCCCAACAGCTCGGAAACAACGCATTCTCAATGGAGAAGCTTCTCAACAACAATTACTCTTCTTCACCTCTTATGCATCCACAGCAGCTCCCTGTGAACCATCTCCAGAATACACAAAAATCACCGACAAACACTAGAGCTCCTTCTGCTTTTACAGATGGAGATGCCCCATCATGCTCAACTTCGCCGTCTACTAATAACTGTCAGACATCACCTCCAAACCCTCTGAAAAGAAATCAACCAGACACATTTGGAGGGCCTTCAATGGTTGAAACCACGAATAATCTGATGCAGGAGCTTCAAAGTAAGTCTGATATGCAGAACAAACATGAATTACATGGCGTTAAAGGACCCGACAAGCAAAAGCACAAAGGTGCAATCAATGATCATATGGAAGCTTCTTCTGGAACATCGTACGGTATTGATCCTGGTAACATCCACCAGAACTTCCCACTTTCTAACTTCTACATGGATGGTGATGTACACTCACAACAACCTAGAAGTAATTTACCATTTGCTTCTAACCTTGATGGATTAACACCTGATCCTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGTTGTCTAATTATGGCGGTGCACCTAGAGACATTGAAACCGAGCTGTCCACTGCTGATATTAGTTCACAGTCGTTTGGTGTACCAAACATGTCTTTTAAGCCAGGATGCTCAAATGAAATTCCTATTGCCGATACTGGAGTTTTGAATAATGGGCTATGGTCTAATCAAAATCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCAGTCGGAAGATGTATTGATGTCACCCGTTACAAAGGGTATGAAGAACTCCGGAATGATTTGGCTCGTATGTTTGGTATCGAAGGACAGCTAGAAGATCCTGTAAGGGTTGACTGGAAACTAGTGTATGTGGATCACGAAAACGACATTCTTCTTGTCGGCGACGACCCTTGGGAAGAATTTGTAAACTGTGTCCAAAGCATAAAGATACTATCATCTGCTGAGGTACAACAAATGAGCTTGGAAGGGGACTTAGGTTATAATATTCCAATCACCAATCAAGCTTGTAGTGGATCAGAAAGTGGCAATGCATGGAGGGCACAGTATGATGATAACTCCGCAGCTTCATTTAATCGATAA

Protein sequence

>MsaT008237.1

MKAPSNGYLANSGEGERKTINSELWHACAGPLVSIPPVGSLVVYFPQGHSEQVAASMQKEADIIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPSEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESEIENAFKRAMPWLGDELGMKDTSSSIFPGLSLVQWMSMQQNNNNQFSAAQSGLLPPSMLSSNAMHGNLSTDDPSKILNFQSSAALSAPSLQFNKPNLPNQVNQLQQPPASWSQQQQQQQKMQSLLPMPLNQLQQQQQQQRQQQLAGPQNLPQPQQQQPQLTQQNPQQPQQQQQHQQPQNTTMNNGTIGSNQIPNQCVQQPVNYSQLQQQLLSGSIQSQQNFQSAGKNGLIMTSLPQDSQFQQQIDQQQAGLLQRQQQQNQLQQSSLQLLQQSMLQRAPQQSQMSQISPQNISDQQQQLQLLQKLQQQQQQQQQQQQQQQQQQQQQQQQQQQQPLSTSSPLLQSQLLPQQSQQLPQQPMSQHQPQQLGNNAFSMEKLLNNNYSSSPLMHPQQLPVNHLQNTQKSPTNTRAPSAFTDGDAPSCSTSPSTNNCQTSPPNPLKRNQPDTFGGPSMVETTNNLMQELQSKSDMQNKHELHGVKGPDKQKHKGAINDHMEASSGTSYGIDPGNIHQNFPLSNFYMDGDVHSQQPRSNLPFASNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSNEIPIADTGVLNNGLWSNQNQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPVRVDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLEGDLGYNIPITNQACSGSESGNAWRAQYDDNSAASFNR*