AlfalfaGEDB | MsaG008322

M. sativa ssp. caerulea / MsaG008322

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008322	XP_039683842.1	63.750	80	29	0	78	157	19	98	6.64e-28	112

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008322	A0A396HPE2	65.823	79	27	0	79	157	15	93	1.23e-27	110

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TFs/TRs:

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Gene ID	Type	Classification
MsaG008322	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG008322	MsaG009260	0.814505	2.573128e-51	4.912338e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008322	MtrunA17_Chr5g0393511	65.823	79	27	0	79	157	15	93	2.37e-31	110
MsaG008322	MtrunA17_Chr8g0359031	72.059	68	19	0	90	157	26	93	3.20e-31	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGAGGCACTTCAAC+TGG	0.411351	2:+32555300	None:intergenic
AAACTGATGAAACAACTAAC+TGG	0.395133	2:-32556284	MsaT008322.1:CDS
AATATTTCATAGGTAAAGGA+TGG	0.596620	2:-32556230	MsaT008322.1:CDS
ACACGTACAAGATTATGATT+TGG	0.385022	2:+32555225	None:intergenic
ACATATTGCTGAAGCCAATG+AGG	0.619819	2:-32555370	MsaT008322.1:CDS
ACGGTATCAATAGTTGGGAG+TGG	0.591362	2:+32556324	None:intergenic
AGACCAGCTCGTGTTTGGCT+TGG	0.438939	2:-32556172	MsaT008322.1:CDS
AGAGTTACGGTATCAATAGT+TGG	0.416559	2:+32556318	None:intergenic
AGGATGGTATAAGTTTGCCC+AGG	0.629082	2:-32556214	MsaT008322.1:CDS
ATATGCAGCACTTTCCTAAA+TGG	0.195617	2:-32556362	MsaT008322.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	32555088	32556480	32555088	ID=MsaG008322
Chr2	mRNA	32555088	32556480	32555088	ID=MsaT008322.1;Parent=MsaG008322
Chr2	exon	32555088	32555153	32555088	ID=MsaT008322.1.exon4;Parent=MsaT008322.1
Chr2	CDS	32555088	32555153	32555088	ID=cds.MsaT008322.1;Parent=MsaT008322.1
Chr2	exon	32555233	32555404	32555233	ID=MsaT008322.1.exon3;Parent=MsaT008322.1
Chr2	CDS	32555233	32555404	32555233	ID=cds.MsaT008322.1;Parent=MsaT008322.1
Chr2	exon	32556144	32556376	32556144	ID=MsaT008322.1.exon2;Parent=MsaT008322.1
Chr2	CDS	32556144	32556376	32556144	ID=cds.MsaT008322.1;Parent=MsaT008322.1
Chr2	exon	32556478	32556480	32556478	ID=MsaT008322.1.exon1;Parent=MsaT008322.1
Chr2	CDS	32556478	32556480	32556478	ID=cds.MsaT008322.1;Parent=MsaT008322.1

Gene Sequence

>MsaT008322.1

ATGCACTTTCCTAAATGGGTAGCTGATTCTTCTCCACTCCCAACTATTGATACCGTAACTCTAATGAATGAAGAAACTGATGAAACAACTAACTGGAAAGTGAAAATATCAAACAAAATCCCTCCTGAATATTTCATAGGTAAAGGATGGTATAAGTTTGCCCAGGATCTCAATCTTAACGTGGGAGACCAGCTCGTGTTTGGCTTGGAGGAATCACAGAAATTCTTCATGTTGGGTGTTGGATCCAAACATATTGCTGAAGCCAATGAGGTTACTCAGGAAGTGACAAAAGTGGAACTGATTGACAATTATCGTGAACCAGTTGAAGTGCCTCCTGTTTTGAATGTTAAGAGAAATTCTTGGGAGATGATTGTGACTGCATCTCATGTTCAACCAAATCATAATCTTCGTCTACCTTGTCATCTTACTTACGAAGGTGTTTTGAGTCCTGAGAAGAACATAATGCTGACGTAA

Protein sequence

>MsaT008322.1

MHFPKWVADSSPLPTIDTVTLMNEETDETTNWKVKISNKIPPEYFIGKGWYKFAQDLNLNVGDQLVFGLEESQKFFMLGVGSKHIAEANEVTQEVTKVELIDNYREPVEVPPVLNVKRNSWEMIVTASHVQPNHNLRLPCHLTYEGVLSPEKNIMLT*