Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008342 | XP_003595365.3 | 98.537 | 752 | 11 | 0 | 3 | 754 | 7 | 758 | 0.0 | 1542 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008342 | sp|Q6NQ79|ARID4_ARATH | 65.119 | 754 | 243 | 9 | 3 | 753 | 6 | 742 | 0.0 | 958 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008342 | A0A396J8R9 | 98.537 | 752 | 11 | 0 | 3 | 754 | 7 | 758 | 0.0 | 1542 |
Gene ID | Type | Classification |
---|---|---|
MsaG008342 | TR | ARID |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008342 | MtrunA17_Chr2g0301851 | 98.537 | 752 | 11 | 0 | 3 | 754 | 7 | 758 | 0.0 | 1542 |
MsaG008342 | MtrunA17_Chr8g0345011 | 61.719 | 768 | 261 | 11 | 3 | 754 | 8 | 758 | 0.0 | 916 |
MsaG008342 | MtrunA17_Chr8g0352941 | 54.545 | 187 | 73 | 4 | 3 | 188 | 8 | 183 | 5.83e-60 | 201 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008342 | AT3G43240.1 | 65.119 | 754 | 243 | 9 | 3 | 753 | 6 | 742 | 0.0 | 958 |
Find 139 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTAAACCATTGTGCTTAAT+TGG | 0.120497 | 2:+32858836 | None:intergenic |
GAAGGATGTAATGCAATTTC+TGG | 0.171195 | 2:-32858576 | MsaT008342.1:CDS |
ACTCACGGTATTAGGTAATT+TGG | 0.204870 | 2:+32863287 | None:intergenic |
CCCTCAAAATATCCTGAAAA+AGG | 0.204985 | 2:+32858905 | None:intergenic |
GTTAGGCGTTGCTAGTATTC+AGG | 0.226328 | 2:-32859212 | MsaT008342.1:CDS |
TTCTGCTCATATATCACTTT+TGG | 0.228233 | 2:-32860618 | MsaT008342.1:CDS |
TTAAAAGGATGCGTGCTTAT+TGG | 0.242537 | 2:-32861799 | MsaT008342.1:intron |
AATAATCCACACAAGGCTTC+TGG | 0.257368 | 2:+32863315 | None:intergenic |
CCAATTAAGCACAATGGTTT+AGG | 0.261786 | 2:-32858836 | MsaT008342.1:CDS |
GAGTACCTTACACTATTTAC+TGG | 0.275735 | 2:-32862929 | MsaT008342.1:CDS |
GCAAGGACTCGGAGCATTTA+AGG | 0.276262 | 2:-32857338 | MsaT008342.1:intron |
TTAACTCTAGTGCATGATTC+TGG | 0.290961 | 2:+32859037 | None:intergenic |
TGTGGTGAGTGGGCTCATTT+TGG | 0.301828 | 2:-32857373 | MsaT008342.1:CDS |
CACCAAACACTCACGGTATT+AGG | 0.305701 | 2:+32863279 | None:intergenic |
GGCAGAGGCACTACATTCTA+AGG | 0.308299 | 2:-32863147 | MsaT008342.1:intron |
GCTAGAGAAAACAATATCTT+TGG | 0.338685 | 2:+32859108 | None:intergenic |
AATACGAGATTTCTTCTTTG+TGG | 0.345310 | 2:-32861948 | MsaT008342.1:CDS |
GAAATTGCATTACATCCTTC+AGG | 0.347475 | 2:+32858579 | None:intergenic |
CAAGAGGAGGCTTTCATGTT+GGG | 0.358461 | 2:-32858358 | MsaT008342.1:CDS |
AGTCTTCTTGCTGTTCTTAG+TGG | 0.359874 | 2:-32863805 | MsaT008342.1:CDS |
CTGGACAAGTTGACTATTCT+CGG | 0.378507 | 2:+32860437 | None:intergenic |
CATGGACCAACTTCAATGTT+AGG | 0.379866 | 2:+32862047 | None:intergenic |
TTAGCATTCAGAACGGCATC+AGG | 0.387346 | 2:+32858503 | None:intergenic |
ACAGTAGCGCAGCAGGTGAC+TGG | 0.395006 | 2:-32857411 | MsaT008342.1:intron |
GTGGATTCAAAGATATTATC+TGG | 0.397675 | 2:+32858762 | None:intergenic |
TTAGATGATAGTGGAGAAAT+CGG | 0.401326 | 2:-32863372 | MsaT008342.1:CDS |
ACCTCTGAGCAAACTCGTAT+TGG | 0.406911 | 2:+32858707 | None:intergenic |
ATAATCCACACAAGGCTTCT+GGG | 0.409031 | 2:+32863316 | None:intergenic |
GTGCTTATTGGAGTCATTAG+AGG | 0.416010 | 2:-32861787 | MsaT008342.1:CDS |
TTTCCGGAACTTTCTTCGTC+CGG | 0.421862 | 2:-32863703 | MsaT008342.1:CDS |
TGGCGATGAGACTGAGGGAT+TGG | 0.441828 | 2:+32858938 | None:intergenic |
ATGTTGGGAATGGTATCAAT+TGG | 0.448776 | 2:-32858343 | MsaT008342.1:CDS |
AGACGCTTGTTTCAATGATC+AGG | 0.449178 | 2:-32860582 | MsaT008342.1:intron |
TTTGTATGCGTGTTCCTACA+TGG | 0.452207 | 2:-32860326 | MsaT008342.1:CDS |
GGTTTATTTGGAAACTCCTA+AGG | 0.454681 | 2:-32863180 | MsaT008342.1:CDS |
CCTTGCAAGTAAACAAAATC+CGG | 0.457763 | 2:+32863402 | None:intergenic |
TTCCGGAACTTTCTTCGTCC+GGG | 0.458654 | 2:-32863702 | MsaT008342.1:CDS |
ACGAAGAAAGTTCCGGAAAC+GGG | 0.460254 | 2:+32863707 | None:intergenic |
CGCCCGGACGAAGAAAGTTC+CGG | 0.466593 | 2:+32863700 | None:intergenic |
TTAGGCGTTGCTAGTATTCA+GGG | 0.466983 | 2:-32859211 | MsaT008342.1:CDS |
TTGAAGATAATGGCAGTGAT+AGG | 0.469399 | 2:-32858988 | MsaT008342.1:CDS |
GACGAAGAAAGTTCCGGAAA+CGG | 0.469803 | 2:+32863706 | None:intergenic |
ATCCAAGCCTACCACTGTGC+AGG | 0.475502 | 2:+32861920 | None:intergenic |
GTTCATGGCTAGGAATTGCC+TGG | 0.478110 | 2:+32860418 | None:intergenic |
TCCTTCGTGTCTGCTTCACA+TGG | 0.479727 | 2:+32862029 | None:intergenic |
AGGCAGCGGTACGACACATT+AGG | 0.481904 | 2:+32859241 | None:intergenic |
CGTTCTGAATGCTAAACGTC+TGG | 0.484571 | 2:-32858495 | MsaT008342.1:CDS |
TTCTTCGTCCGGGCGACTTG+AGG | 0.487254 | 2:-32863692 | MsaT008342.1:intron |
TCTAGTGCATGATTCTGGTT+CGG | 0.487722 | 2:+32859042 | None:intergenic |
GTTGGAAAGCATCCCATGTA+TGG | 0.489682 | 2:+32862174 | None:intergenic |
CGAGCAAGTTCATCGAAAGT+AGG | 0.491578 | 2:+32863444 | None:intergenic |
TGTGATAGGCGGCAAGGACT+CGG | 0.492876 | 2:-32857349 | MsaT008342.1:CDS |
ATGCAATTTCTGGTTCTTCG+AGG | 0.493393 | 2:-32858566 | MsaT008342.1:CDS |
ACAAGGCTTCTGGGGTAGAC+AGG | 0.494386 | 2:+32863325 | None:intergenic |
TGTTCCTACATGGGCTTCAC+AGG | 0.500006 | 2:-32860316 | MsaT008342.1:intron |
CTGTGGTATGTGTGGTGAGT+GGG | 0.501449 | 2:-32857383 | MsaT008342.1:CDS |
CTACGCGAAAACTGATGGGC+TGG | 0.502485 | 2:-32856916 | MsaT008342.1:CDS |
GGGGATGTAAACTTCAAAAT+CGG | 0.503125 | 2:-32860859 | MsaT008342.1:CDS |
GGTCAGCAGTTAGATGATAG+TGG | 0.504243 | 2:-32863381 | MsaT008342.1:CDS |
TGAAGCAGACACGAAGGAAG+AGG | 0.507245 | 2:-32862024 | MsaT008342.1:CDS |
TCAAGAGGAGGCTTTCATGT+TGG | 0.508202 | 2:-32858359 | MsaT008342.1:CDS |
TTTATAGAAGAACTAGTCTC+AGG | 0.513374 | 2:+32861990 | None:intergenic |
GTCAACAACAGTAGCGCAGC+AGG | 0.516609 | 2:-32857418 | MsaT008342.1:intron |
CAGGACTACGCGAAAACTGA+TGG | 0.518231 | 2:-32856921 | MsaT008342.1:CDS |
CAGAAGGGCAGCGGTAAGCT+TGG | 0.520328 | 2:-32862092 | MsaT008342.1:CDS |
TACCGCTGCCTAGTTATGTT+AGG | 0.522097 | 2:-32859229 | MsaT008342.1:CDS |
GCTGCTTGGAGAGGAGGTGG+TGG | 0.523024 | 2:+32860692 | None:intergenic |
TGCAATTTCTGGTTCTTCGA+GGG | 0.523821 | 2:-32858565 | MsaT008342.1:CDS |
CGAGAATAGTCAACTTGTCC+AGG | 0.524411 | 2:-32860436 | MsaT008342.1:CDS |
GATCTTCGAGGCTCGTATGA+AGG | 0.528082 | 2:+32860384 | None:intergenic |
GAAAGCATCCCATGTATGGC+TGG | 0.537247 | 2:+32862178 | None:intergenic |
TAGCAACGCCTAACATAACT+AGG | 0.538395 | 2:+32859221 | None:intergenic |
TTGTATGCGTGTTCCTACAT+GGG | 0.540688 | 2:-32860325 | MsaT008342.1:CDS |
TTAGCTCATGATGATGTAGA+TGG | 0.541719 | 2:-32857552 | MsaT008342.1:CDS |
GTAGTACATCCAGCCATACA+TGG | 0.542147 | 2:-32862187 | MsaT008342.1:intron |
AATGCTGCTTATTGTGTCAC+AGG | 0.542245 | 2:-32857527 | MsaT008342.1:intron |
TTCAAACACACTAGATCCAC+AGG | 0.544026 | 2:+32860350 | None:intergenic |
AAATCGCAGAAAACTGCAAA+CGG | 0.546266 | 2:-32856852 | MsaT008342.1:CDS |
AGTTCTAGAACAACTGCAGC+CGG | 0.546683 | 2:-32863421 | MsaT008342.1:CDS |
GCTACTGAAGCTGATCTTCG+AGG | 0.548233 | 2:+32860372 | None:intergenic |
GGAGGCTTTCATGTTGGGAA+TGG | 0.550648 | 2:-32858353 | MsaT008342.1:CDS |
GAGAAATCGGGTCTCTTGTG+TGG | 0.550777 | 2:-32863359 | MsaT008342.1:CDS |
GAACCTCCTAACATTGAAGT+TGG | 0.554306 | 2:-32862053 | MsaT008342.1:CDS |
CAAGGCCACCTTGTGGAATG+AGG | 0.556124 | 2:+32858534 | None:intergenic |
GTTGCTGCTTGGAGAGGAGG+TGG | 0.556794 | 2:+32860689 | None:intergenic |
CAGTAGCGCAGCAGGTGACT+GGG | 0.557484 | 2:-32857410 | MsaT008342.1:CDS |
TAAAAGATGACTGAGCAAGT+TGG | 0.561412 | 2:+32862156 | None:intergenic |
CGGCATCAGGGAACTCAGCA+AGG | 0.574376 | 2:+32858516 | None:intergenic |
ACAAACTTACTTCAGTACAT+AGG | 0.576760 | 2:+32861748 | None:intergenic |
GGCGTGAAAGTTGAAGATAA+TGG | 0.577013 | 2:-32858998 | MsaT008342.1:CDS |
AGTCGTCACCTCAAGTCGCC+CGG | 0.580510 | 2:+32863684 | None:intergenic |
TCTACCCCAGAAGCCTTGTG+TGG | 0.580528 | 2:-32863321 | MsaT008342.1:CDS |
TGCGTGAGAATGTTGCTGCT+TGG | 0.581290 | 2:+32860678 | None:intergenic |
TCCAAGCCTACCACTGTGCA+GGG | 0.581847 | 2:+32861921 | None:intergenic |
TTTGGTTGTGATAGGCGGCA+AGG | 0.582920 | 2:-32857355 | MsaT008342.1:CDS |
AATGTTGCTGCTTGGAGAGG+AGG | 0.594965 | 2:+32860686 | None:intergenic |
GCTGGAGGCATCAACCAACT+AGG | 0.596103 | 2:+32859082 | None:intergenic |
ACTGTGGTATGTGTGGTGAG+TGG | 0.596504 | 2:-32857384 | MsaT008342.1:CDS |
TAATCCACACAAGGCTTCTG+GGG | 0.601263 | 2:+32863317 | None:intergenic |
AGGACTACGCGAAAACTGAT+GGG | 0.603153 | 2:-32856920 | MsaT008342.1:CDS |
CGCCTAACATAACTAGGCAG+CGG | 0.603194 | 2:+32859227 | None:intergenic |
CATGTTCCAATTAAGCACAA+TGG | 0.605715 | 2:-32858842 | MsaT008342.1:CDS |
TAGATGATAGTGGAGAAATC+GGG | 0.606612 | 2:-32863371 | MsaT008342.1:CDS |
GGGAATGGTATCAATTGGAA+AGG | 0.606924 | 2:-32858338 | MsaT008342.1:CDS |
GCATGATGATGATGCTTCTG+AGG | 0.612121 | 2:-32863746 | MsaT008342.1:CDS |
CGTGGATATATCACAGCGCA+TGG | 0.614411 | 2:+32860646 | None:intergenic |
GTTAAATCTATCAATGCTAG+TGG | 0.615417 | 2:-32859019 | MsaT008342.1:CDS |
AGAAATCGGGTCTCTTGTGT+GGG | 0.616018 | 2:-32863358 | MsaT008342.1:CDS |
GGACCAACTTCAATGTTAGG+AGG | 0.616126 | 2:+32862050 | None:intergenic |
GAGGCATCAACCAACTAGGA+TGG | 0.619735 | 2:+32859086 | None:intergenic |
CATACCTCACAACAGTCAGA+AGG | 0.629474 | 2:-32862108 | MsaT008342.1:CDS |
CACAACAGTCAGAAGGGCAG+CGG | 0.630640 | 2:-32862101 | MsaT008342.1:CDS |
TTTCTGTTTGTAACTGAACG+AGG | 0.636062 | 2:+32858812 | None:intergenic |
TGGGTGAACTGTGGTATGTG+TGG | 0.638192 | 2:-32857391 | MsaT008342.1:CDS |
TTATTGGAGTCATTAGAGGA+TGG | 0.641905 | 2:-32861783 | MsaT008342.1:CDS |
AACTCAGCAAGGCCACCTTG+TGG | 0.644829 | 2:+32858527 | None:intergenic |
GTAAACTTCAAAATCGGACG+AGG | 0.646275 | 2:-32860853 | MsaT008342.1:intron |
GTTTATTTGGAAACTCCTAA+GGG | 0.646559 | 2:-32863179 | MsaT008342.1:CDS |
GAGAATGTTGCTGCTTGGAG+AGG | 0.646813 | 2:+32860683 | None:intergenic |
TAGCATTCAGAACGGCATCA+GGG | 0.648273 | 2:+32858504 | None:intergenic |
TAGTACATCCAGCCATACAT+GGG | 0.649585 | 2:-32862186 | MsaT008342.1:CDS |
CTGCCCTTCTGACTGTTGTG+AGG | 0.649813 | 2:+32862104 | None:intergenic |
AGATCAGCTTCAGTAGCCTG+TGG | 0.650358 | 2:-32860366 | MsaT008342.1:CDS |
ATACCTCACAACAGTCAGAA+GGG | 0.652494 | 2:-32862107 | MsaT008342.1:CDS |
TTAACCTGTGAAGCCCATGT+AGG | 0.655672 | 2:+32860312 | None:intergenic |
TTGTGCTTAATTGGAACATG+AGG | 0.656277 | 2:+32858845 | None:intergenic |
GGAAGAAAATAATCCACACA+AGG | 0.664859 | 2:+32863308 | None:intergenic |
CAGACGTTTAGCATTCAGAA+CGG | 0.667993 | 2:+32858496 | None:intergenic |
CATACTCGCCTCATTCCACA+AGG | 0.680159 | 2:-32858542 | MsaT008342.1:CDS |
AGCAACATTCTCACGCAGCG+TGG | 0.682119 | 2:-32860672 | MsaT008342.1:CDS |
TTGTGGATTTCCCTGCACAG+TGG | 0.689802 | 2:-32861931 | MsaT008342.1:intron |
TCCAATACGAGTTTGCTCAG+AGG | 0.694110 | 2:-32858708 | MsaT008342.1:intron |
ACTATACTGTGTGCAAAACG+AGG | 0.696352 | 2:-32862132 | MsaT008342.1:CDS |
TCCATGTGAAGCAGACACGA+AGG | 0.700858 | 2:-32862030 | MsaT008342.1:CDS |
GTGACAGGAGGAATTCCTGA+AGG | 0.703165 | 2:-32858594 | MsaT008342.1:intron |
ACTCGCCTCATTCCACAAGG+TGG | 0.716807 | 2:-32858539 | MsaT008342.1:CDS |
TATATGAGCAGAACTAGACG+TGG | 0.718027 | 2:+32860628 | None:intergenic |
AAATTTGACATGCTGCAGTG+TGG | 0.731876 | 2:+32856882 | None:intergenic |
GCAGGTGACTGGGTGAACTG+TGG | 0.732040 | 2:-32857400 | MsaT008342.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 32856845 | 32864430 | 32856845 | ID=MsaG008342 |
Chr2 | mRNA | 32856845 | 32864430 | 32856845 | ID=MsaT008342.1;Parent=MsaG008342 |
Chr2 | exon | 32856845 | 32856940 | 32856845 | ID=MsaT008342.1.exon16;Parent=MsaT008342.1 |
Chr2 | CDS | 32856845 | 32856940 | 32856845 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32857339 | 32857429 | 32857339 | ID=MsaT008342.1.exon15;Parent=MsaT008342.1 |
Chr2 | CDS | 32857339 | 32857429 | 32857339 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32857528 | 32857628 | 32857528 | ID=MsaT008342.1.exon14;Parent=MsaT008342.1 |
Chr2 | CDS | 32857528 | 32857628 | 32857528 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32858289 | 32858387 | 32858289 | ID=MsaT008342.1.exon13;Parent=MsaT008342.1 |
Chr2 | CDS | 32858289 | 32858387 | 32858289 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32858472 | 32858609 | 32858472 | ID=MsaT008342.1.exon12;Parent=MsaT008342.1 |
Chr2 | CDS | 32858472 | 32858609 | 32858472 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32858709 | 32859281 | 32858709 | ID=MsaT008342.1.exon11;Parent=MsaT008342.1 |
Chr2 | CDS | 32858709 | 32859281 | 32858709 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32860317 | 32860490 | 32860317 | ID=MsaT008342.1.exon10;Parent=MsaT008342.1 |
Chr2 | CDS | 32860317 | 32860490 | 32860317 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32860583 | 32860718 | 32860583 | ID=MsaT008342.1.exon9;Parent=MsaT008342.1 |
Chr2 | CDS | 32860583 | 32860718 | 32860583 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32860854 | 32860885 | 32860854 | ID=MsaT008342.1.exon8;Parent=MsaT008342.1 |
Chr2 | CDS | 32860854 | 32860885 | 32860854 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32861758 | 32861814 | 32861758 | ID=MsaT008342.1.exon7;Parent=MsaT008342.1 |
Chr2 | CDS | 32861758 | 32861814 | 32861758 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32861932 | 32862205 | 32861932 | ID=MsaT008342.1.exon6;Parent=MsaT008342.1 |
Chr2 | CDS | 32861932 | 32862205 | 32861932 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32862864 | 32862952 | 32862864 | ID=MsaT008342.1.exon5;Parent=MsaT008342.1 |
Chr2 | CDS | 32862864 | 32862952 | 32862864 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32863148 | 32863201 | 32863148 | ID=MsaT008342.1.exon4;Parent=MsaT008342.1 |
Chr2 | CDS | 32863148 | 32863201 | 32863148 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32863293 | 32863484 | 32863293 | ID=MsaT008342.1.exon3;Parent=MsaT008342.1 |
Chr2 | CDS | 32863293 | 32863484 | 32863293 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32863693 | 32863845 | 32863693 | ID=MsaT008342.1.exon2;Parent=MsaT008342.1 |
Chr2 | CDS | 32863693 | 32863845 | 32863693 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Chr2 | exon | 32864425 | 32864430 | 32864425 | ID=MsaT008342.1.exon1;Parent=MsaT008342.1 |
Chr2 | CDS | 32864425 | 32864430 | 32864425 | ID=cds.MsaT008342.1;Parent=MsaT008342.1 |
Gene Sequence |
Protein sequence |