AlfalfaGEDB | MsaG008359

M. sativa ssp. caerulea / MsaG008359

KEGG: K12412
GO: -
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008359	RHN73765.1	77.540	187	35	2	1	187	10	189	2.78e-90	273

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008359	sp\|Q4PSU4\|AGL61_ARATH	28.289	152	105	4	29	178	65	214	1.45e-12	67.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008359	A0A396JBD2	77.540	187	35	2	1	187	10	189	1.33e-90	273

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TFs/TRs:

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Gene ID	Type	Classification
MsaG008359	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG008359	MsaG046180	0.824368	1.484820e-53	3.671258e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008359	MtrunA17_Chr2g0302091	77.540	187	35	2	1	187	10	189	2.56e-94	273
MsaG008359	MtrunA17_Chr3g0093131	63.636	165	56	4	26	188	18	180	1.30e-59	184
MsaG008359	MtrunA17_Chr8g0345001	49.438	178	83	5	15	188	3	177	3.50e-45	147
MsaG008359	MtrunA17_Chr4g0018951	33.088	136	77	3	47	181	31	153	3.35e-17	75.1
MsaG008359	MtrunA17_Chr2g0333981	36.196	163	90	7	27	181	5	161	3.46e-17	75.1
MsaG008359	MtrunA17_Chr8g0379021	35.849	159	91	7	27	181	10	161	1.80e-15	70.9
MsaG008359	MtrunA17_Chr8g0355091	33.918	171	87	8	15	175	2	156	7.04e-14	67.4
MsaG008359	MtrunA17_Chr5g0422421	33.121	157	95	7	28	178	7	159	3.29e-13	65.9
MsaG008359	MtrunA17_Chr1g0206991	34.568	162	86	8	28	178	7	159	4.04e-13	64.7
MsaG008359	MtrunA17_Chr2g0292791	33.908	174	89	8	15	178	2	159	6.73e-13	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008359	AT2G24840.1	28.289	152	105	4	29	178	65	214	1.47e-13	67.4
MsaG008359	AT5G60440.1	31.875	160	91	7	29	178	9	160	2.54e-13	67.0

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Find 26 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAACAAGTTCTATGCATG+TGG	0.639320	2:+33158407	MsaT008359.1:CDS
AATTTACGTGCAGCAAGCGA+AGG	0.589056	2:+33158713	MsaT008359.1:CDS
ACGATGAATGACAGCATCAC+AGG	0.499770	2:-33158435	None:intergenic
ATCGTCGACCATCATATGTC+CGG	0.542227	2:-33158465	None:intergenic
ATGAAATTGCTGAAACCCTA+AGG	0.533334	2:+33158510	MsaT008359.1:CDS
ATGTCAATTTCCATGATTGG+TGG	0.630551	2:+33158618	MsaT008359.1:CDS
CGATGAATGACAGCATCACA+GGG	0.591570	2:-33158434	None:intergenic
GAAAGCTGTCAAAGTCACCA+AGG	0.688984	2:+33158583	MsaT008359.1:CDS
GAACAACACTGAACAACACA+CGG	0.651271	2:+33158240	MsaT008359.1:CDS
GACATATGATGGTCGACGAT+GGG	0.514442	2:+33158468	MsaT008359.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	33158176	33158742	33158176	ID=MsaG008359
Chr2	mRNA	33158176	33158742	33158176	ID=MsaT008359.1;Parent=MsaG008359
Chr2	exon	33158176	33158742	33158176	ID=MsaT008359.1.exon1;Parent=MsaT008359.1
Chr2	CDS	33158176	33158742	33158176	ID=cds.MsaT008359.1;Parent=MsaT008359.1

Gene Sequence

>MsaT008359.1

ATGTTGAATGAAACAAACTGGGACAACATGAATGCTGCTAGGGCTTCTGAGAGAAAGAATGCTGGAACAACACTGAACAACACACGGAAGAGAAAGATGCATGAAATCAAGAAAGAAGAAAAACTGAACGGTTCTGAGTTCTCAAGACGCAAACTCGGAATATTCAACAAAGCAATAGAACTGTCTATTCTATGCCAATCAAAAACTGCACTCCTCGTCAAATCGCCGGACAAGAACAAGTTCTATGCATGTGGCTACCCCTGTGATGCTGTCATTCATCGTTTTCTGACCGGACATATGATGGTCGACGATGGGAAAAAGAAGAAACAAGATGATGAAATTGCTGAAACCCTAAGGCTTCAATATGAAGCACTTCAAGAAAAACTTGAAGAAGAGGAGGATAATTTGAAAGCTGTCAAAGTCACCAAGGCACAAAAGAGTGATGTCAATTTCCATGATTGGTGGAATAATTCTATTGATGATATGAATTTAGCATCTCTTGAAGACTTTAAGAATTCTTTGGAGAGTTTTAAGGGTAATTTACGTGCAGCAAGCGAAGGAAAGTAA

Protein sequence

>MsaT008359.1

MLNETNWDNMNAARASERKNAGTTLNNTRKRKMHEIKKEEKLNGSEFSRRKLGIFNKAIELSILCQSKTALLVKSPDKNKFYACGYPCDAVIHRFLTGHMMVDDGKKKKQDDEIAETLRLQYEALQEKLEEEEDNLKAVKVTKAQKSDVNFHDWWNNSIDDMNLASLEDFKNSLESFKGNLRAASEGK*