AlfalfaGEDB | MsaG008363

M. sativa ssp. caerulea / MsaG008363

KEGG: K12412
GO: -
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008363	RHN73765.1	84.653	202	30	1	1	201	1	202	1.00e-113	332

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008363	sp\|Q9FKK2\|AGL62_ARATH	30.818	159	97	7	51	201	29	182	7.86e-12	66.2

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008363	A0A396JBD2	84.653	202	30	1	1	201	1	202	4.78e-114	332

TFs/TRs:

Gene ID	Type	Classification
MsaG008363	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001542	MsaG008363	0.831223	3.400344e-55	1.019128e-52
MsaG005540	MsaG008363	0.816492	9.336882e-52	1.874583e-49
MsaG006261	MsaG008363	0.815051	1.949497e-51	3.773290e-49
MsaG006314	MsaG008363	0.808981	4.043643e-50	6.737680e-48
MsaG008029	MsaG008363	0.827388	2.870963e-54	7.717386e-52
MsaG008363	MsaG011584	0.813486	4.306381e-51	8.013772e-49
MsaG008363	MsaG012282	0.814000	3.322277e-51	6.262665e-49
MsaG008363	MsaG017189	0.814432	2.670135e-51	5.088290e-49
MsaG008363	MsaG018223	0.802523	9.052737e-49	1.296075e-46
MsaG008363	MsaG019861	0.804739	3.155897e-49	4.755604e-47
MsaG008363	MsaG026842	0.809212	3.609794e-50	6.048067e-48
MsaG008363	MsaG027483	0.862127	1.249179e-63	1.053515e-60
MsaG008363	MsaG027963	0.811718	1.044309e-50	1.859874e-48
MsaG008363	MsaG028211	0.805368	2.335085e-49	3.570456e-47
MsaG008363	MsaG040013	0.814736	2.288545e-51	4.394452e-49
MsaG008363	MsaG040428	0.819552	1.913983e-52	4.159730e-50
MsaG008363	MsaG043669	0.811288	1.293964e-50	2.280331e-48
MsaG008363	MsaG003846	0.835261	3.391469e-56	1.144839e-53
MsaG008363	MsaG003581	0.820121	1.420127e-52	3.133519e-50
MsaG008363	MsaG010137	0.804785	3.087198e-49	4.657091e-47
MsaG008363	MsaG032525	0.800791	2.043792e-48	2.813169e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008363	MtrunA17_Chr2g0302091	84.653	202	30	1	1	201	1	202	9.21e-118	332
MsaG008363	MtrunA17_Chr3g0093131	61.905	189	56	5	15	195	6	186	1.76e-65	200
MsaG008363	MtrunA17_Chr8g0345001	46.842	190	81	6	23	201	3	183	6.84e-43	142
MsaG008363	MtrunA17_Chr2g0333981	38.272	162	81	6	35	182	5	161	6.12e-19	80.1
MsaG008363	MtrunA17_Chr4g0018951	34.586	133	73	3	51	182	34	153	3.71e-17	75.5
MsaG008363	MtrunA17_Chr8g0379021	35.465	172	90	7	35	196	10	170	3.63e-15	70.1
MsaG008363	MtrunA17_Chr5g0422421	32.051	156	91	6	36	179	7	159	1.44e-12	64.3
MsaG008363	MtrunA17_Chr3g0099421	31.677	161	85	5	36	179	32	184	9.38e-12	62.4
MsaG008363	MtrunA17_Chr8g0355091	32.948	173	79	8	23	176	2	156	9.71e-12	62.0
MsaG008363	MtrunA17_Chr3g0119901	32.168	143	77	6	50	182	30	162	1.01e-11	61.6
MsaG008363	MtrunA17_Chr1g0206701	31.613	155	87	6	36	176	7	156	1.39e-11	61.6
MsaG008363	MtrunA17_Chr1g0206991	30.864	162	85	7	36	179	7	159	2.55e-11	60.1
MsaG008363	MtrunA17_Chr3g0085241	30.769	143	79	6	50	182	62	194	4.38e-11	60.5
MsaG008363	MtrunA17_Chr1g0149391	30.380	158	91	6	36	179	7	159	5.01e-11	60.1
MsaG008363	MtrunA17_Chr5g0422941	30.061	163	79	7	36	176	7	156	5.27e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008363	AT5G60440.1	30.818	159	97	7	51	201	29	182	7.99e-13	66.2
MsaG008363	AT2G24840.1	26.882	186	114	6	37	201	65	249	1.64e-12	64.7

Find 29 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAAGTAGCAATGTTTATATT+TGG	0.182142	2:-33191004	None:intergenic
GTTTATATTTGGATGTAAAT+TGG	0.215750	2:-33190993	None:intergenic
TGAGGACTTTAAGAATTCTT+TGG	0.239126	2:+33190925	MsaT008363.1:CDS
GAATAATTCTATTGATGATA+TGG	0.255478	2:+33190889	MsaT008363.1:CDS
GTGCTTCATATTGAAGCCTT+AGG	0.338858	2:-33190775	None:intergenic
TAGAATTATTCCACCAATCA+TGG	0.397833	2:-33190877	None:intergenic
TGAAGAAGAGCAGGATACTT+TGG	0.413235	2:+33190811	MsaT008363.1:CDS
TGCTTCATATTGAAGCCTTA+GGG	0.444644	2:-33190774	None:intergenic
GCATAGAACTTGTTCTTGTC+CGG	0.453036	2:-33190650	None:intergenic
GAATTCTTTGGAGAGTTTCA+AGG	0.479356	2:+33190937	MsaT008363.1:CDS
TTCAGCAAGCGAAGCAGAGA+AGG	0.486404	2:+33190970	MsaT008363.1:CDS
AATTCTTTGGAGAGTTTCAA+GGG	0.490979	2:+33190938	MsaT008363.1:CDS
GATGCATGAAATCAAGAAAG+AGG	0.498636	2:+33190541	MsaT008363.1:CDS
ACGATGAATGACAGCATCAC+AGG	0.499770	2:-33190684	None:intergenic
ATCCTCGACCATCATATGTC+CGG	0.509285	2:-33190714	None:intergenic
ACATGAATAAGAAAATTGCT+AGG	0.527390	2:+33190465	MsaT008363.1:CDS
ATGAAATTGCTGAAACCCTA+AGG	0.533334	2:+33190759	MsaT008363.1:CDS
GGACATATGATGGTCGAGGA+TGG	0.543275	2:+33190716	MsaT008363.1:CDS
TGCAATCATCGTCAAATCGC+CGG	0.556447	2:+33190631	MsaT008363.1:CDS
GACATATGATGGTCGAGGAT+GGG	0.560153	2:+33190717	MsaT008363.1:CDS
CATGAATAAGAAAATTGCTA+GGG	0.586387	2:+33190466	MsaT008363.1:CDS
CGATGAATGACAGCATCACA+GGG	0.591570	2:-33190683	None:intergenic
GACCGGACATATGATGGTCG+AGG	0.605126	2:+33190712	MsaT008363.1:CDS
AAGAACAAGTTCTATGCATG+TGG	0.639320	2:+33190656	MsaT008363.1:CDS
TATGGATTTAGCATCTCTTG+AGG	0.650206	2:+33190907	MsaT008363.1:CDS
GAACAAAACTCAACAACACA+CGG	0.651271	2:+33190510	MsaT008363.1:CDS
GCTAGTGAGAGAAAGAACCC+TGG	0.692523	2:+33190488	MsaT008363.1:CDS
GGAAGCTGTCAAAGTCACTG+AGG	0.723299	2:+33190832	MsaT008363.1:CDS
GATGAATGACAGCATCACAG+GGG	0.800398	2:-33190682	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	33190422	33191027	33190422	ID=MsaG008363
Chr2	mRNA	33190422	33191027	33190422	ID=MsaT008363.1;Parent=MsaG008363
Chr2	exon	33190422	33191027	33190422	ID=MsaT008363.1.exon1;Parent=MsaT008363.1
Chr2	CDS	33190422	33191027	33190422	ID=cds.MsaT008363.1;Parent=MsaT008363.1

Gene Sequence

>MsaT008363.1

ATGTTATCAGATAATTCATCATCAGTGATGTTGTATGAAACAGACATGAATAAGAAAATTGCTAGGGCTAGTGAGAGAAAGAACCCTGGAACAAAACTCAACAACACACGGAAGAGAAAGATGCATGAAATCAAGAAAGAGGAAAAAGAACGCAGACTCGGAATTTTCAACAAAGCGATAGAGCTGTCTATTCTATGCCAATCAAAAACTGCAATCATCGTCAAATCGCCGGACAAGAACAAGTTCTATGCATGTGGCTACCCCTGTGATGCTGTCATTCATCGTTTTCTGACCGGACATATGATGGTCGAGGATGGGAAAAAGAAGAAACAAGATGATGAAATTGCTGAAACCCTAAGGCTTCAATATGAAGCACTTCAAGAAAAACTTGAAGAAGAGCAGGATACTTTGGAAGCTGTCAAAGTCACTGAGGCACAAAAGAGTGATTTTAATTTCCATGATTGGTGGAATAATTCTATTGATGATATGGATTTAGCATCTCTTGAGGACTTTAAGAATTCTTTGGAGAGTTTCAAGGGTAATTTACGTTCAGCAAGCGAAGCAGAGAAGGCCAATTTACATCCAAATATAAACATTGCTACTTAA

Protein sequence

>MsaT008363.1

MLSDNSSSVMLYETDMNKKIARASERKNPGTKLNNTRKRKMHEIKKEEKERRLGIFNKAIELSILCQSKTAIIVKSPDKNKFYACGYPCDAVIHRFLTGHMMVEDGKKKKQDDEIAETLRLQYEALQEKLEEEQDTLEAVKVTEAQKSDFNFHDWWNNSIDDMDLASLEDFKNSLESFKGNLRSASEAEKANLHPNINIAT*