AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG008372


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG008372 MtrunA17_Chr2g0302391 95.571 429 18 1 1 428 1 429 0.0 809
MsaG008372 MtrunA17_Chr3g0099641 47.162 229 108 6 185 409 225 444 5.05e-57 194
MsaG008372 MtrunA17_Chr7g0270831 34.722 360 187 11 64 415 92 411 3.36e-52 181
MsaG008372 MtrunA17_Chr4g0075201 36.691 278 161 4 68 338 120 389 1.93e-48 172
MsaG008372 MtrunA17_Chr2g0322391 35.381 407 180 15 66 408 167 554 2.98e-48 174
MsaG008372 MtrunA17_Chr2g0288871 32.506 403 199 11 68 411 143 531 4.29e-44 161
MsaG008372 MtrunA17_Chr4g0025061 50.000 164 73 2 196 357 345 501 2.73e-41 154
MsaG008372 MtrunA17_Chr4g0025051 54.430 158 65 3 182 338 306 457 2.43e-40 152
MsaG008372 MtrunA17_Chr4g0051181 50.658 152 64 4 195 338 227 375 2.64e-37 142
MsaG008372 MtrunA17_Chr4g0060271 63.158 95 31 1 181 271 221 315 8.76e-37 142
MsaG008372 MtrunA17_Chr7g0216891 61.386 101 38 1 185 284 192 292 2.34e-36 140
MsaG008372 MtrunA17_Chr4g0024391 39.241 237 120 7 190 408 208 438 1.71e-33 131
MsaG008372 MtrunA17_Chr4g0001361 42.857 105 58 2 192 294 141 245 5.19e-24 101
MsaG008372 MtrunA17_Chr5g0432161 49.020 102 50 2 172 273 383 482 1.61e-23 103
MsaG008372 MtrunA17_Chr5g0432161 46.667 60 30 2 212 271 245 302 7.35e-11 64.3
MsaG008372 MtrunA17_Chr2g0333851 39.850 133 70 3 194 321 147 274 1.12e-22 97.8
MsaG008372 MtrunA17_Chr7g0270191 37.671 146 80 4 195 330 129 273 1.47e-22 97.1
MsaG008372 MtrunA17_Chr1g0150271 48.235 85 42 2 209 291 99 183 2.74e-22 95.5
MsaG008372 MtrunA17_Chr3g0136961 50.602 83 38 1 209 291 136 215 2.84e-22 96.3
MsaG008372 MtrunA17_Chr1g0150281 50.685 73 36 0 196 268 125 197 5.17e-22 95.5
MsaG008372 MtrunA17_Chr3g0079691 41.667 120 64 3 184 299 464 581 3.25e-21 96.3
MsaG008372 MtrunA17_Chr3g0079691 39.362 94 54 3 183 275 251 342 1.00e-13 73.2
MsaG008372 MtrunA17_Chr5g0445311 50.633 79 38 1 195 273 348 425 3.65e-21 95.9
MsaG008372 MtrunA17_Chr7g0263531 41.129 124 65 3 169 287 314 434 5.14e-21 94.7
MsaG008372 MtrunA17_Chr7g0263531 42.308 78 43 2 212 289 190 265 2.98e-12 68.2
MsaG008372 MtrunA17_Chr3g0106491 51.282 78 37 1 194 271 348 424 9.16e-21 94.4
MsaG008372 MtrunA17_Chr5g0419241 65.517 58 19 1 183 239 48 105 1.25e-20 86.7
MsaG008372 MtrunA17_Chr3g0101131 50.633 79 38 1 195 273 399 476 1.56e-20 94.0
MsaG008372 MtrunA17_Chr4g0004911 50.000 82 37 2 193 271 315 395 2.87e-20 92.8
MsaG008372 MtrunA17_Chr4g0004911 36.975 119 69 4 163 279 137 251 7.57e-13 70.1
MsaG008372 MtrunA17_Chr7g0218081 47.674 86 44 1 198 283 397 481 5.77e-20 92.0
MsaG008372 MtrunA17_Chr7g0218081 48.333 60 29 2 212 271 229 286 1.20e-11 66.6
MsaG008372 MtrunA17_Chr4g0042831 45.977 87 46 1 196 282 263 348 5.99e-20 91.3
MsaG008372 MtrunA17_Chr7g0249311 48.148 81 41 1 193 273 374 453 7.26e-20 92.0
MsaG008372 MtrunA17_Chr7g0249301 48.148 81 41 1 193 273 274 353 1.07e-19 90.1
MsaG008372 MtrunA17_Chr7g0249301 43.939 66 35 2 210 275 61 124 6.88e-11 63.5
MsaG008372 MtrunA17_Chr5g0418191 45.161 93 47 2 198 287 307 398 1.61e-19 90.1
MsaG008372 MtrunA17_Chr5g0418191 50.000 60 28 2 212 271 152 209 5.25e-12 67.4
MsaG008372 MtrunA17_Chr3g0129321 51.351 74 35 1 198 271 105 177 1.81e-19 86.3
MsaG008372 MtrunA17_Chr4g0068541 47.674 86 43 2 195 280 192 275 1.83e-19 90.1
MsaG008372 MtrunA17_Chr2g0294231 45.122 82 44 1 195 276 187 267 4.96e-19 88.2
MsaG008372 MtrunA17_Chr2g0289181 49.296 71 36 0 212 282 15 85 5.41e-19 85.5
MsaG008372 MtrunA17_Chr5g0447701 40.708 113 61 3 182 290 223 333 6.31e-19 88.2
MsaG008372 MtrunA17_Chr7g0224801 45.263 95 47 2 178 268 56 149 7.01e-19 83.6
MsaG008372 MtrunA17_Chr1g0194481 44.444 81 44 1 195 275 142 221 1.31e-18 86.3
MsaG008372 MtrunA17_Chr7g0248721 34.503 171 85 7 116 281 58 206 1.38e-18 84.3
MsaG008372 MtrunA17_Chr5g0443131 44.872 78 42 1 198 275 144 220 1.50e-18 85.9
MsaG008372 MtrunA17_Chr7g0243891 47.500 80 41 1 194 273 357 435 2.00e-18 87.4
MsaG008372 MtrunA17_Chr4g0051881 35.252 139 70 4 198 323 165 296 2.03e-18 85.9
MsaG008372 MtrunA17_Chr8g0383251 47.297 74 38 1 198 271 95 167 2.36e-18 82.8
MsaG008372 MtrunA17_Chr2g0284321 55.738 61 27 0 212 272 36 96 4.68e-18 82.4
MsaG008372 MtrunA17_Chr1g0150801 49.315 73 36 1 196 268 87 158 4.82e-18 81.3
MsaG008372 MtrunA17_Chr4g0053281 54.839 62 28 0 212 273 267 328 7.66e-18 84.3
MsaG008372 MtrunA17_Chr8g0379461 56.667 60 26 0 212 271 77 136 3.75e-17 80.5
MsaG008372 MtrunA17_Chr5g0401821 41.837 98 48 1 182 270 161 258 4.49e-17 80.9
MsaG008372 MtrunA17_Chr4g0074001 44.156 77 42 1 195 271 343 418 7.19e-17 82.8
MsaG008372 MtrunA17_Chr5g0418781 42.683 82 46 1 188 269 101 181 7.33e-17 80.5
MsaG008372 MtrunA17_Chr8g0386241 36.893 103 61 2 181 280 70 171 8.24e-17 78.2
MsaG008372 MtrunA17_Chr7g0270051 50.725 69 34 0 212 280 54 122 9.13e-17 80.1
MsaG008372 MtrunA17_Chr1g0184691 52.459 61 29 0 212 272 294 354 1.03e-16 81.3
MsaG008372 MtrunA17_Chr1g0188941 43.373 83 46 1 189 271 29 110 2.26e-16 75.1
MsaG008372 MtrunA17_Chr1g0147881 52.542 59 28 0 212 270 263 321 4.62e-16 79.0
MsaG008372 MtrunA17_Chr2g0319961 55.000 60 27 0 212 271 81 140 5.77e-16 77.4
MsaG008372 MtrunA17_Chr7g0228941 50.000 58 29 0 212 269 53 110 6.85e-16 73.9
MsaG008372 MtrunA17_Chr8g0335811 45.882 85 41 2 188 268 127 210 7.73e-16 76.6
MsaG008372 MtrunA17_Chr2g0293481 39.394 99 59 1 186 283 241 339 1.08e-15 79.0
MsaG008372 MtrunA17_Chr3g0129361 41.053 95 53 2 195 289 128 219 1.37e-15 75.5
MsaG008372 MtrunA17_Chr8g0348311 51.429 70 34 0 212 281 156 225 1.86e-15 77.0
MsaG008372 MtrunA17_Chr1g0202461 43.678 87 49 0 211 297 261 347 5.56e-15 76.3
MsaG008372 MtrunA17_Chr8g0387501 42.353 85 47 1 210 294 128 210 6.41e-15 74.7
MsaG008372 MtrunA17_Chr7g0248691 50.000 70 35 0 212 281 155 224 1.17e-14 74.7
MsaG008372 MtrunA17_Chr4g0071521 52.632 57 27 0 212 268 246 302 1.89e-14 73.9
MsaG008372 MtrunA17_Chr8g0383351 48.438 64 32 1 205 268 154 216 7.36e-14 70.9
MsaG008372 MtrunA17_Chr3g0139021 39.744 78 47 0 195 272 298 375 1.09e-13 72.4
MsaG008372 MtrunA17_Chr1g0189391 31.915 141 92 3 129 268 17 154 1.56e-13 71.2
MsaG008372 MtrunA17_Chr6g0485431 52.308 65 29 2 212 275 155 218 2.80e-13 70.9
MsaG008372 MtrunA17_Chr7g0238921 52.632 57 26 1 212 268 125 180 6.66e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG008372 AT4G04450.2 37.942 311 143 7 70 338 20 322 2.85e-53 184
MsaG008372 AT4G04450.1 37.942 311 143 7 70 338 114 416 2.82e-52 183
MsaG008372 AT1G62300.1 36.070 402 174 17 74 411 158 540 4.45e-49 175
MsaG008372 AT4G01720.1 34.324 370 192 9 66 406 96 443 6.85e-46 166
MsaG008372 AT4G22070.4 35.494 324 153 9 66 341 108 423 3.44e-43 159
MsaG008372 AT4G22070.3 35.494 324 153 9 66 341 108 423 3.44e-43 159
MsaG008372 AT4G22070.2 35.494 324 153 9 66 341 108 423 3.44e-43 159
MsaG008372 AT4G22070.1 35.494 324 153 9 66 341 108 423 3.44e-43 159
MsaG008372 AT5G15130.1 34.431 334 144 9 68 340 35 354 1.21e-41 155
MsaG008372 AT5G15130.2 51.534 163 63 4 187 340 157 312 1.72e-41 154
MsaG008372 AT1G68150.1 64.815 108 37 1 189 296 213 319 5.57e-41 150
MsaG008372 AT1G18860.1 33.524 349 159 10 68 343 41 389 5.75e-37 142
MsaG008372 AT1G69810.1 44.937 158 74 3 185 340 177 323 1.19e-32 127
MsaG008372 AT1G69810.2 44.172 163 78 3 180 340 114 265 1.34e-32 126
MsaG008372 AT5G07100.2 39.130 138 73 4 146 280 81 210 4.12e-25 102
MsaG008372 AT5G07100.4 39.130 138 73 4 146 280 81 210 4.12e-25 102
MsaG008372 AT5G07100.5 39.130 138 73 4 146 280 81 210 4.12e-25 102
MsaG008372 AT5G07100.3 39.130 138 73 4 146 280 81 210 4.12e-25 102
MsaG008372 AT5G07100.1 38.571 140 75 4 144 280 172 303 6.28e-25 104
MsaG008372 AT1G80840.1 31.658 199 106 6 75 271 36 206 4.09e-22 96.3
MsaG008372 AT4G31800.2 56.000 75 32 1 205 278 104 178 6.44e-22 94.7
MsaG008372 AT4G31800.1 56.000 75 32 1 205 278 169 243 6.78e-22 95.9
MsaG008372 AT2G38470.1 42.857 119 64 3 156 273 308 423 8.11e-22 98.2
MsaG008372 AT2G38470.1 48.333 60 29 2 212 271 185 242 5.30e-11 65.1
MsaG008372 AT2G47260.1 48.810 84 42 1 195 278 158 240 1.27e-21 95.5
MsaG008372 AT1G29860.1 48.148 81 41 1 195 275 120 199 2.04e-21 94.0
MsaG008372 AT5G41570.1 48.352 91 42 2 182 268 65 154 2.48e-21 91.3
MsaG008372 AT2G30250.1 47.826 92 45 2 186 275 301 391 3.79e-21 95.1
MsaG008372 AT2G04880.2 49.351 77 38 1 197 273 269 344 5.36e-21 95.5
MsaG008372 AT2G25000.2 55.556 72 31 1 204 274 95 166 6.19e-21 91.3
MsaG008372 AT2G25000.4 55.556 72 31 1 204 274 95 166 6.19e-21 91.3
MsaG008372 AT2G04880.1 49.351 77 38 1 197 273 293 368 7.16e-21 95.1
MsaG008372 AT2G25000.3 55.556 72 31 1 204 274 117 188 1.01e-20 91.3
MsaG008372 AT4G18170.1 46.875 96 48 3 178 271 137 231 1.16e-20 92.4
MsaG008372 AT2G25000.1 55.556 72 31 1 204 274 138 209 1.20e-20 91.7
MsaG008372 AT1G64000.1 51.190 84 37 2 198 281 101 180 2.95e-20 88.6
MsaG008372 AT5G56270.1 48.864 88 44 1 186 273 462 548 4.56e-20 93.2
MsaG008372 AT4G26640.5 49.351 77 38 1 195 271 189 264 4.85e-20 91.7
MsaG008372 AT4G26640.6 49.351 77 38 1 195 271 189 264 4.85e-20 91.7
MsaG008372 AT4G26640.4 49.351 77 38 1 195 271 189 264 4.85e-20 91.7
MsaG008372 AT4G26640.3 49.351 77 38 1 195 271 189 264 4.85e-20 91.7
MsaG008372 AT4G26640.7 48.718 78 39 1 194 271 324 400 7.86e-20 92.0
MsaG008372 AT4G26640.1 49.351 77 38 1 195 271 293 368 9.18e-20 91.7
MsaG008372 AT4G26640.2 49.351 77 38 1 195 271 365 440 1.07e-19 92.0
MsaG008372 AT5G26170.1 52.778 72 33 1 197 268 99 169 1.42e-19 86.3
MsaG008372 AT1G13960.2 50.000 74 36 1 198 271 243 315 1.82e-19 89.7
MsaG008372 AT1G13960.2 50.000 60 28 2 212 271 77 134 1.29e-11 66.2
MsaG008372 AT1G13960.1 50.000 74 36 1 198 271 396 468 2.60e-19 90.5
MsaG008372 AT1G13960.1 50.000 60 28 2 212 271 230 287 9.43e-12 67.4
MsaG008372 AT3G62340.1 44.037 109 55 2 198 301 105 212 4.11e-19 87.4
MsaG008372 AT5G64810.1 48.276 87 41 2 183 269 85 167 4.39e-19 85.5
MsaG008372 AT2G03340.1 48.684 76 38 1 198 273 402 476 4.95e-19 89.7
MsaG008372 AT2G03340.1 51.667 60 27 2 212 271 251 308 9.10e-13 70.5
MsaG008372 AT2G46130.1 45.263 95 48 2 187 281 6 96 5.00e-19 82.4
MsaG008372 AT5G13080.1 48.193 83 39 2 198 280 54 132 5.01e-19 83.6
MsaG008372 AT5G49520.1 45.161 93 49 2 195 286 205 296 5.15e-19 89.0
MsaG008372 AT5G46350.1 41.667 96 54 2 198 293 170 263 5.27e-19 87.8
MsaG008372 AT3G01970.1 50.000 74 36 1 197 270 51 123 1.26e-18 82.8
MsaG008372 AT3G01080.1 48.649 74 37 1 198 271 293 365 1.52e-18 87.8
MsaG008372 AT3G01080.2 48.649 74 37 1 198 271 331 403 1.75e-18 87.8
MsaG008372 AT1G69310.4 45.238 84 45 1 186 269 122 204 2.33e-18 85.5
MsaG008372 AT1G69310.2 45.238 84 45 1 186 269 122 204 2.33e-18 85.5
MsaG008372 AT1G69310.1 45.238 84 45 1 186 269 122 204 2.33e-18 85.5
MsaG008372 AT4G26440.1 34.459 148 83 5 161 295 311 457 5.41e-18 86.7
MsaG008372 AT4G30935.1 38.136 118 67 3 182 295 303 418 6.66e-18 85.9
MsaG008372 AT2G37260.2 39.695 131 59 6 157 274 209 332 1.72e-17 84.0
MsaG008372 AT2G37260.2 44.156 77 39 3 211 287 83 155 3.08e-13 70.9
MsaG008372 AT2G37260.3 39.695 131 59 6 157 274 211 334 1.77e-17 84.0
MsaG008372 AT2G37260.3 44.156 77 39 3 211 287 85 157 3.27e-13 70.9
MsaG008372 AT2G23320.1 57.627 59 25 0 212 270 241 299 2.66e-17 82.8
MsaG008372 AT2G37260.1 41.221 131 57 7 157 274 291 414 2.93e-17 84.0
MsaG008372 AT2G37260.1 44.156 77 39 3 211 287 165 237 4.34e-13 71.2
MsaG008372 AT2G30590.1 54.688 64 28 1 212 274 314 377 6.94e-17 82.4
MsaG008372 AT5G28650.1 57.895 57 24 0 212 268 263 319 7.65e-17 81.6
MsaG008372 AT3G04670.1 57.895 57 24 0 212 268 263 319 1.19e-16 81.3
MsaG008372 AT4G24240.1 55.932 59 26 0 212 270 282 340 2.35e-16 80.5
MsaG008372 AT1G55600.1 42.697 89 46 2 189 273 281 368 2.83e-16 81.3
MsaG008372 AT1G29280.1 45.882 85 38 1 202 286 65 141 3.68e-16 78.6
MsaG008372 AT4G31550.1 44.872 78 40 1 212 289 247 321 4.10e-16 79.3
MsaG008372 AT4G31550.2 44.872 78 40 1 212 289 246 320 4.25e-16 79.3
MsaG008372 AT2G44745.1 43.956 91 46 2 182 268 112 201 4.37e-16 77.4
MsaG008372 AT2G24570.1 53.448 58 27 0 212 269 244 301 1.08e-15 78.2
MsaG008372 AT1G30650.1 43.529 85 47 1 188 271 193 277 1.65e-15 78.6
MsaG008372 AT2G34830.1 43.529 85 47 1 188 271 191 275 1.79e-15 78.6
MsaG008372 AT4G01250.1 48.649 74 38 0 208 281 125 198 1.89e-15 77.0
MsaG008372 AT2G34830.2 43.529 85 47 1 188 271 200 284 2.26e-15 78.2
MsaG008372 AT4G23550.1 43.373 83 47 0 209 291 138 220 2.81e-15 76.6
MsaG008372 AT3G58710.1 55.000 60 27 0 212 271 72 131 4.31e-15 75.5
MsaG008372 AT3G58710.2 55.000 60 27 0 212 271 71 130 4.58e-15 75.5
MsaG008372 AT5G52830.1 50.000 70 35 0 212 281 166 235 1.43e-14 75.1
MsaG008372 AT2G46130.2 42.105 95 47 3 187 281 6 92 3.44e-14 68.9
MsaG008372 AT4G39410.1 40.000 85 50 1 184 268 196 279 5.65e-14 72.8
MsaG008372 AT5G45050.4 36.842 114 69 1 212 322 1042 1155 1.35e-13 73.6
MsaG008372 AT5G45050.2 36.842 114 69 1 212 322 1153 1266 1.47e-13 73.6
MsaG008372 AT5G45050.1 36.842 114 69 1 212 322 1181 1294 1.52e-13 73.6
MsaG008372 AT1G69310.3 41.667 84 44 2 186 269 122 200 1.53e-13 71.2
MsaG008372 AT5G43290.1 47.541 61 31 1 212 272 115 174 3.28e-12 67.0
MsaG008372 AT4G31800.3 62.222 45 16 1 205 248 169 213 4.32e-12 66.2
MsaG008372 AT2G21900.1 46.667 60 31 1 212 271 110 168 5.21e-12 65.1
MsaG008372 AT2G46400.1 36.000 100 62 1 190 287 83 182 3.76e-11 64.3
MsaG008372 AT2G40740.1 43.902 82 35 3 212 282 174 255 4.17e-11 63.9
MsaG008372 AT2G40740.3 43.902 82 35 3 212 282 183 264 5.50e-11 63.9

Find 96 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCATTGTTTATCATATT+TGG 0.055350 2:-33331190 None:intergenic
CACTACTCTTACTAGGTAAT+TGG 0.189983 2:-33331336 None:intergenic
ATTAATCACTTACTTGGATT+TGG 0.221328 2:-33328052 None:intergenic
TTAATCACTTACTTGGATTT+GGG 0.256367 2:-33328051 None:intergenic
TCTTCAGAATCGTTTACTTT+TGG 0.317553 2:+33328369 MsaT008372.1:CDS
AGCCTACTATCGTTGCAGTA+TGG 0.326812 2:+33329321 MsaT008372.1:CDS
GGGGATTTCCTTGAATTTGA+TGG 0.332291 2:-33328031 None:intergenic
AAAATCTGATCGTGCCCTTA+TGG 0.343745 2:-33329115 None:intergenic
GGGTGTCAATGGAGAAAATA+TGG 0.346609 2:+33329265 MsaT008372.1:CDS
TCTTTATTGTTATTATCATA+TGG 0.359665 2:-33327536 None:intergenic
TAGTTTACCTGCTTACGAAC+TGG 0.359755 2:-33329355 None:intergenic
GAAGTTGTGTTGTGTTATTA+AGG 0.369494 2:-33328007 None:intergenic
GATGATGTTAGGTTTGCTAT+TGG 0.371407 2:-33330902 None:intergenic
TCTTACTAGGTAATTGGCTT+TGG 0.372010 2:-33331330 None:intergenic
TTTGAGTTTGGTGGAGATAA+TGG 0.378048 2:-33331010 None:intergenic
AATTAACCACTACTCTTACT+AGG 0.379801 2:-33331343 None:intergenic
GTAGCTATAACATTTGAGTT+TGG 0.383227 2:-33331022 None:intergenic
TCAACAAATCTACAACAATA+TGG 0.389536 2:+33330953 MsaT008372.1:CDS
TTTAAGAGGTATGCTAAATC+TGG 0.393699 2:+33328327 MsaT008372.1:CDS
ATGATTATGGCTCCCTTCAT+AGG 0.402020 2:-33330858 None:intergenic
CAATGAGAGAAAACTTGCTT+TGG 0.409723 2:+33331204 MsaT008372.1:CDS
TGTTGAGTGCTGATGATGTT+AGG 0.413129 2:-33330913 None:intergenic
AGTTCAAACAATGAAATTGC+TGG 0.417191 2:+33327496 MsaT008372.1:CDS
CGATAGTAGGCTCGTGGACA+AGG 0.430122 2:-33329310 None:intergenic
GTAAAATCAAGTGTAATTGT+AGG 0.435039 2:-33331067 None:intergenic
TGTAATGTTTAGATGGTTGA+TGG 0.440145 2:+33329244 MsaT008372.1:intron
GGAGAGCTAGAGTGTCCATA+AGG 0.442520 2:+33329100 MsaT008372.1:CDS
GGGATTTCCTTGAATTTGAT+GGG 0.451310 2:-33328030 None:intergenic
GCTATAACATTTGAGTTTGG+TGG 0.456982 2:-33331019 None:intergenic
AAATAATGGATTTGCCATAG+TGG 0.457421 2:+33328975 MsaT008372.1:CDS
TTGAATTGTAAATAGTTACT+TGG 0.461039 2:-33331097 None:intergenic
CTGGTGGAAGTTGATGATTA+TGG 0.462621 2:-33330871 None:intergenic
TGAAATAAATAGCAAAATAG+AGG 0.463782 2:+33329053 MsaT008372.1:CDS
AAGGAGAATGAAAATTTAAG+AGG 0.466438 2:+33328313 MsaT008372.1:CDS
TAATGACCTTGGAATGGAAA+AGG 0.467036 2:-33331145 None:intergenic
CAACTTCCCCATCAAATTCA+AGG 0.467550 2:+33328023 MsaT008372.1:CDS
AGATGGTTGATGGGTGTCAA+TGG 0.469133 2:+33329254 MsaT008372.1:intron
GCCTACTATCGTTGCAGTAT+GGG 0.470435 2:+33329322 MsaT008372.1:CDS
TGCACCCAACCTCAGATGAT+TGG 0.470879 2:-33329077 None:intergenic
ACAGGTGCAAAGGTGTTTCA+AGG 0.472939 2:+33330814 MsaT008372.1:intron
AGTATTCTTGTGGAAGGAAG+AGG 0.476940 2:-33327582 None:intergenic
GCCATGTCCTCGTTCACAAA+TGG 0.479556 2:+33331286 MsaT008372.1:CDS
TTTGGAAACACCTCAAATGA+TGG 0.495575 2:-33331172 None:intergenic
CCCCATACTGCAACGATAGT+AGG 0.503349 2:-33329323 None:intergenic
GAAGCTTGATGAAGCAAAGA+AGG 0.508309 2:+33328294 MsaT008372.1:CDS
AGGACCAATCATCTGAGGTT+GGG 0.511884 2:+33329073 MsaT008372.1:CDS
AGTTTACCTGCTTACGAACT+GGG 0.512250 2:-33329354 None:intergenic
GAGAGCTAGAGTGTCCATAA+GGG 0.513998 2:+33329101 MsaT008372.1:CDS
TTCATGCCCAGTTCGTAAGC+AGG 0.514284 2:+33329348 MsaT008372.1:CDS
CTTAATAAAAGAGTAGATCC+TGG 0.516100 2:-33327978 None:intergenic
GTGTTCATCACAACCTATGA+AGG 0.519912 2:+33330845 MsaT008372.1:CDS
TAAAATCAAGTGTAATTGTA+GGG 0.521053 2:-33331066 None:intergenic
AAATAATCACAACTTGCTGC+TGG 0.523498 2:+33328426 MsaT008372.1:CDS
GAGGACCAATCATCTGAGGT+TGG 0.528239 2:+33329072 MsaT008372.1:CDS
GAAAACTTACAGTATTCTTG+TGG 0.529390 2:-33327592 None:intergenic
TCGTGGACAAGGGTTGCCCT+TGG 0.531338 2:-33329299 None:intergenic
ATTGTAGGGCATGTTGGAGA+TGG 0.532259 2:-33331052 None:intergenic
AGTGTAATTGTAGGGCATGT+TGG 0.533130 2:-33331058 None:intergenic
AATCATCTGAGGTTGGGTGC+AGG 0.533609 2:+33329079 MsaT008372.1:CDS
AATTGTAAATAGTTACTTGG+AGG 0.535746 2:-33331094 None:intergenic
TTGCTACAATCTGAAGGTGA+AGG 0.539687 2:-33328952 None:intergenic
GAGATAATGGTGAAGAGAAG+AGG 0.540861 2:-33330997 None:intergenic
TCATTACCCTCCATCATTTG+AGG 0.541576 2:+33331162 MsaT008372.1:CDS
ATGATGGAGGGTAATGACCT+TGG 0.552017 2:-33331156 None:intergenic
GCATGTGAGTACATTAATGA+AGG 0.552654 2:+33329030 MsaT008372.1:CDS
TCCATTTGTGAACGAGGACA+TGG 0.553076 2:-33331287 None:intergenic
ATTGTAAATAGTTACTTGGA+GGG 0.553408 2:-33331093 None:intergenic
ACTTACAGTATTCTTGTGGA+AGG 0.564229 2:-33327588 None:intergenic
GTAATGTTTAGATGGTTGAT+GGG 0.564516 2:+33329245 MsaT008372.1:intron
TGTAGATTTGTTGATGAGGT+AGG 0.565582 2:-33330944 None:intergenic
GATTTGTTGATGAGGTAGGA+AGG 0.569280 2:-33330940 None:intergenic
AACTGACGAGTAGGTAACAC+TGG 0.572998 2:-33328919 None:intergenic
ATTGCAATTAACAGGTGCAA+AGG 0.574633 2:+33330804 MsaT008372.1:intron
AATGACCTTGGAATGGAAAA+GGG 0.575264 2:-33331144 None:intergenic
TAATCACTTACTTGGATTTG+GGG 0.580090 2:-33328050 None:intergenic
AATAATGCTTCCTTGAGAGA+AGG 0.583998 2:-33331259 None:intergenic
CCTACTATCGTTGCAGTATG+GGG 0.587972 2:+33329323 MsaT008372.1:CDS
TTATTGTTATTATCATATGG+TGG 0.589100 2:-33327533 None:intergenic
GGAAACACCTCAAATGATGG+AGG 0.600501 2:-33331169 None:intergenic
GGAGGGTAATGACCTTGGAA+TGG 0.607233 2:-33331151 None:intergenic
GAAGGGAAATACACAAGATG+CGG 0.615352 2:+33328891 MsaT008372.1:intron
TCATCAAAGAACTGACGAGT+AGG 0.619422 2:-33328928 None:intergenic
TATGGACAAAAGACAGCCAA+GGG 0.623915 2:+33329283 MsaT008372.1:CDS
ATATGGACAAAAGACAGCCA+AGG 0.629423 2:+33329282 MsaT008372.1:CDS
GAAACACCTCAAATGATGGA+GGG 0.632932 2:-33331168 None:intergenic
CTGCAACGATAGTAGGCTCG+TGG 0.637106 2:-33329316 None:intergenic
CAATTACCTAGTAAGAGTAG+TGG 0.638666 2:+33331337 MsaT008372.1:CDS
GATAGTAGGCTCGTGGACAA+GGG 0.644110 2:-33329309 None:intergenic
GGAAAACAATGAAAACAACA+TGG 0.645971 2:+33328996 MsaT008372.1:CDS
TGTTCATCACAACCTATGAA+GGG 0.646804 2:+33330846 MsaT008372.1:CDS
GGATTTCCTTGAATTTGATG+GGG 0.651214 2:-33328029 None:intergenic
AATAGAGGACCAATCATCTG+AGG 0.655874 2:+33329068 MsaT008372.1:CDS
AGAATCTCCATTTGTGAACG+AGG 0.664014 2:-33331293 None:intergenic
GAAAACAATGAAAACAACAT+GGG 0.672904 2:+33328997 MsaT008372.1:CDS
TTGTTGTAGATTTGTTGATG+AGG 0.675654 2:-33330948 None:intergenic
AATTGCTGGAAGTTGATGAA+AGG 0.676322 2:+33327510 MsaT008372.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 33327485 33331363 33327485 ID=MsaG008372
Chr2 mRNA 33327485 33331363 33327485 ID=MsaT008372.1;Parent=MsaG008372
Chr2 exon 33327485 33327604 33327485 ID=MsaT008372.1.exon1;Parent=MsaT008372.1
Chr2 CDS 33327485 33327604 33327485 ID=cds.MsaT008372.1;Parent=MsaT008372.1
Chr2 exon 33327978 33328061 33327978 ID=MsaT008372.1.exon2;Parent=MsaT008372.1
Chr2 CDS 33327978 33328061 33327978 ID=cds.MsaT008372.1;Parent=MsaT008372.1
Chr2 exon 33328277 33328447 33328277 ID=MsaT008372.1.exon3;Parent=MsaT008372.1
Chr2 CDS 33328277 33328447 33328277 ID=cds.MsaT008372.1;Parent=MsaT008372.1
Chr2 exon 33328892 33329143 33328892 ID=MsaT008372.1.exon4;Parent=MsaT008372.1
Chr2 CDS 33328892 33329143 33328892 ID=cds.MsaT008372.1;Parent=MsaT008372.1
Chr2 exon 33329256 33329369 33329256 ID=MsaT008372.1.exon5;Parent=MsaT008372.1
Chr2 CDS 33329256 33329369 33329256 ID=cds.MsaT008372.1;Parent=MsaT008372.1
Chr2 exon 33330818 33331363 33330818 ID=MsaT008372.1.exon6;Parent=MsaT008372.1
Chr2 CDS 33330818 33331363 33330818 ID=cds.MsaT008372.1;Parent=MsaT008372.1
Gene Sequence

>MsaT008372.1

ATGGAAGAAAAAGTTCAAACAATGAAATTGCTGGAAGTTGATGAAAGGCCACCATATGATAATAACAATAAAGATCTACAAAACAAGATCGATGAATCCTCTTCCTTCCACAAGAATACTCCAGGATCTACTCTTTTATTAAGTTTGAGCCTTAATAACACAACACAACTTCCCCATCAAATTCAAGGAAATCCCCAAATCCAAATTGGCAATATACGAGTGAAGCTTGATGAAGCAAAGAAGGAGAATGAAAATTTAAGAGGTATGCTAAATCTGGTCAACGATCGATGCAATGTTCTTCAGAATCGTTTACTTTTGGCTATGCATATGCATCAATCATCTTCCTTGCCTCAAAATAATCACAACTTGCTGCTGAAGGGAAATACACAAGATGCGGAGAAACCAGTGTTACCTACTCGTCAGTTCTTTGATGAGCCTTCACCTTCAGATTGTAGCAAAAATAATGGATTTGCCATAGTGGAAAACAATGAAAACAACATGGGAAGAAATTTTGCATGTGAGTACATTAATGAAGGTGAAATAAATAGCAAAATAGAGGACCAATCATCTGAGGTTGGGTGCAGGAGAGCTAGAGTGTCCATAAGGGCACGATCAGATTTTGCATTTATGGTTGATGGGTGTCAATGGAGAAAATATGGACAAAAGACAGCCAAGGGCAACCCTTGTCCACGAGCCTACTATCGTTGCAGTATGGGGACTTCATGCCCAGTTCGTAAGCAGGTGCAAAGGTGTTTCAAGGATGAGAGTGTGTTCATCACAACCTATGAAGGGAGCCATAATCATCAACTTCCACCAGCAGCAAAACCAATAGCAAACCTAACATCATCAGCACTCAACACATTCCTTCCTACCTCATCAACAAATCTACAACAATATGGCAACAATCTAACAAATACATTCCTCTTCTCTTCACCATTATCTCCACCAAACTCAAATGTTATAGCTACTTTCTCTCCATCTCCAACATGCCCTACAATTACACTTGATTTTACACTCCCTCCAAGTAACTATTTACAATTCAAAAATCATAAACAATCATCATTGCTCCCTTTTCCATTCCAAGGTCATTACCCTCCATCATTTGAGGTGTTTCCAAATATGATAAACAATGAGAGAAAACTTGCTTTGGTTGATGTTGTGAGTGAAGCTCTAGAAAAAGATCCTTCTCTCAAGGAAGCATTATTTTCAGCCATGTCCTCGTTCACAAATGGAGATTCTTCAAATATTAATAACCAAAGCCAATTACCTAGTAAGAGTAGTGGTTAA

Protein sequence

>MsaT008372.1

MEEKVQTMKLLEVDERPPYDNNNKDLQNKIDESSSFHKNTPGSTLLLSLSLNNTTQLPHQIQGNPQIQIGNIRVKLDEAKKENENLRGMLNLVNDRCNVLQNRLLLAMHMHQSSSLPQNNHNLLLKGNTQDAEKPVLPTRQFFDEPSPSDCSKNNGFAIVENNENNMGRNFACEYINEGEINSKIEDQSSEVGCRRARVSIRARSDFAFMVDGCQWRKYGQKTAKGNPCPRAYYRCSMGTSCPVRKQVQRCFKDESVFITTYEGSHNHQLPPAAKPIANLTSSALNTFLPTSSTNLQQYGNNLTNTFLFSSPLSPPNSNVIATFSPSPTCPTITLDFTLPPSNYLQFKNHKQSSLLPFPFQGHYPPSFEVFPNMINNERKLALVDVVSEALEKDPSLKEALFSAMSSFTNGDSSNINNQSQLPSKSSG*