AlfalfaGEDB | MsaG008377

M. sativa ssp. caerulea / MsaG008377

KEGG: K07198
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008377	XP_039686455.1	96.468	453	13	2	1	453	1	450	0.0	890

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008377	sp\|Q8RWC9\|CIPK1_ARATH	70.345	435	126	1	13	447	13	444	0.0	602

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008377	G7IQG8	92.505	467	19	2	1	453	1	465	0.0	856

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008377	MtrunA17_Chr2g0302431	92.505	467	19	2	1	453	1	465	0.0	856
MsaG008377	MtrunA17_Chr4g0069301	75.056	445	100	3	1	438	1	441	0.0	655
MsaG008377	MtrunA17_Chr5g0441011	52.358	424	191	4	16	436	9	424	5.53e-158	454
MsaG008377	MtrunA17_Chr2g0304111	50.461	434	197	5	12	436	15	439	3.19e-153	442
MsaG008377	MtrunA17_Chr8g0346081	50.588	425	197	7	15	436	12	426	2.30e-149	432
MsaG008377	MtrunA17_Chr8g0346071	49.541	436	201	8	4	436	6	425	1.54e-147	427
MsaG008377	MtrunA17_Chr5g0428031	47.541	427	209	5	16	436	5	422	1.68e-144	420
MsaG008377	MtrunA17_Chr4g0063881	45.755	424	221	4	16	434	7	426	8.25e-141	410
MsaG008377	MtrunA17_Chr4g0013131	48.558	416	210	4	15	430	7	418	4.92e-133	391
MsaG008377	MtrunA17_Chr7g0244521	46.244	426	212	7	15	431	7	424	9.86e-131	385

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008377	AT3G17510.1	70.345	435	126	1	13	447	13	444	0.0	602
MsaG008377	AT1G48260.1	67.202	436	135	3	13	447	4	432	0.0	581
MsaG008377	AT3G17510.2	70.137	365	106	1	83	447	3	364	2.67e-177	501
MsaG008377	AT1G48260.2	66.949	354	109	3	95	447	1	347	9.81e-167	473
MsaG008377	AT1G48260.4	66.949	354	109	3	95	447	1	347	9.81e-167	473
MsaG008377	AT1G48260.3	66.949	354	109	3	95	447	1	347	9.81e-167	473
MsaG008377	AT1G48260.5	66.949	354	109	3	95	447	1	347	9.81e-167	473
MsaG008377	AT1G30270.1	53.555	422	192	3	17	436	28	447	1.49e-163	470
MsaG008377	AT1G30270.2	53.555	422	192	3	17	436	28	447	2.83e-163	469
MsaG008377	AT5G21326.1	51.887	424	193	4	16	436	9	424	4.42e-159	457

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Find 103 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTATCGAACGACTT+GGG	0.625083	2:+33391896	MsaT008377.1:CDS
AAAGAACCTTAAGATCCCTG+TGG	0.735780	2:-33390022	None:intergenic
AAAGTATACCACTTCATGGA+TGG	0.534265	2:-33390913	None:intergenic
AAATCGGATATTTGGTCATG+CGG	0.649847	2:+33390506	MsaT008377.1:CDS
AAATGTTGTTAGATTATACG+AGG	0.707766	2:+33385966	MsaT008377.1:CDS
AACATAATTTGGACTTCCAC+AGG	0.505590	2:-33390444	None:intergenic
AACCAAGCAAGAAGGATTGA+AGG	0.486624	2:+33385531	MsaT008377.1:CDS
AACTTATTGAAGCTCATGGT+AGG	0.611299	2:+33389943	MsaT008377.1:CDS
AAGCCTCTCAGTTGCAGCAG+AGG	0.516216	2:+33391602	MsaT008377.1:CDS
AAGGAAAAGTAGTGCAATTA+GGG	0.362891	2:+33385550	MsaT008377.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	33385519	33391970	33385519	ID=MsaG008377
Chr2	mRNA	33385519	33391970	33385519	ID=MsaT008377.1;Parent=MsaG008377
Chr2	exon	33385519	33385710	33385519	ID=MsaT008377.1.exon1;Parent=MsaT008377.1
Chr2	CDS	33385519	33385710	33385519	ID=cds.MsaT008377.1;Parent=MsaT008377.1
Chr2	exon	33385925	33385987	33385925	ID=MsaT008377.1.exon2;Parent=MsaT008377.1
Chr2	CDS	33385925	33385987	33385925	ID=cds.MsaT008377.1;Parent=MsaT008377.1
Chr2	exon	33389437	33389508	33389437	ID=MsaT008377.1.exon3;Parent=MsaT008377.1
Chr2	CDS	33389437	33389508	33389437	ID=cds.MsaT008377.1;Parent=MsaT008377.1
Chr2	exon	33389930	33390037	33389930	ID=MsaT008377.1.exon4;Parent=MsaT008377.1
Chr2	CDS	33389930	33390037	33389930	ID=cds.MsaT008377.1;Parent=MsaT008377.1
Chr2	exon	33390123	33390203	33390123	ID=MsaT008377.1.exon5;Parent=MsaT008377.1
Chr2	CDS	33390123	33390203	33390123	ID=cds.MsaT008377.1;Parent=MsaT008377.1
Chr2	exon	33390422	33390601	33390422	ID=MsaT008377.1.exon6;Parent=MsaT008377.1
Chr2	CDS	33390422	33390601	33390422	ID=cds.MsaT008377.1;Parent=MsaT008377.1
Chr2	exon	33390702	33390926	33390702	ID=MsaT008377.1.exon7;Parent=MsaT008377.1
Chr2	CDS	33390702	33390926	33390702	ID=cds.MsaT008377.1;Parent=MsaT008377.1
Chr2	exon	33391143	33391247	33391143	ID=MsaT008377.1.exon8;Parent=MsaT008377.1
Chr2	CDS	33391143	33391247	33391143	ID=cds.MsaT008377.1;Parent=MsaT008377.1
Chr2	exon	33391354	33391470	33391354	ID=MsaT008377.1.exon9;Parent=MsaT008377.1
Chr2	CDS	33391354	33391470	33391354	ID=cds.MsaT008377.1;Parent=MsaT008377.1
Chr2	exon	33391561	33391623	33391561	ID=MsaT008377.1.exon10;Parent=MsaT008377.1
Chr2	CDS	33391561	33391623	33391561	ID=cds.MsaT008377.1;Parent=MsaT008377.1
Chr2	exon	33391728	33391802	33391728	ID=MsaT008377.1.exon11;Parent=MsaT008377.1
Chr2	CDS	33391728	33391802	33391728	ID=cds.MsaT008377.1;Parent=MsaT008377.1
Chr2	exon	33391890	33391970	33391890	ID=MsaT008377.1.exon12;Parent=MsaT008377.1
Chr2	CDS	33391890	33391970	33391890	ID=cds.MsaT008377.1;Parent=MsaT008377.1

Gene Sequence

>MsaT008377.1

ATGGTGATCATAAACCAAGCAAGAAGGATTGAAGGAAAAGTAGTGCAATTAGGGAAATACGAATTGGGAAAAACACTTGGTGAAGGAAATTTTGGAAAAGTGAAATTGGCTAGAGATACTGATTGTGGAAATTATTTTGCTGTTAAGATTCTTGAAAAGAATAAGATTGTTGATCTTAATAACACTGATCAGATAAAGAGGGAGATATCAACTTTGAAGCTTCTGAAACATCCAAATGTTGTTAGATTATACGAGGTCTTGGCTAGCAAAACCAAAATTTATATGGTACTTGAGTACGTGAATGGAGGAGAGTTATTTGACAAAATTTCATCCAAAGGTAAACTTATTGAAGCTCATGGTAGGAAGATGTTCCAACAACTGATTGATGGTGTGAGTTACTGCCACAATAAGGGTGTCTTCCACAGGGATCTTAAGTTAGAGAATGTACTTGTCGATGCCAAAGGAAACATAAAGATAACTGATTTTAACCTCAGTGCTTTGCCCCAACATTGTAGGGCAGATGGGTTGCTGCATACAACCTGTGGAAGTCCAAATTATGTTGCTCCTGAGATTCTTGCCAATAGAGGCTATGATGGCGCGAAATCGGATATTTGGTCATGCGGTGTTATCTTATATGTAATTCTAACGGGATATCTTCCTTTTGATGACAGAAATCTTGCAGTTCTCTATCAAAAGATTTTCAAAGCAGATGTTCAGATACCAAGATGGCTGTCACCCGGTGCACAAAACATTATAAAGAAAATTCTTGATCCCAATCCTAAAACCCGAGTAACGATGGATATGATCAAAGAAGATGAATGGTTTAAGGAGGGTTATAATCCTGCAAATCTAGAGGATGAGGAAGAAGAAGAGGAAGAGGATGTATACACTGACGATGAAGCTTTTTCCATCCATGAAGTGTCCCTTGAAGGAGACCAGAGTCCAAAATCACCGGCACTTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCTTAGACCTCTCCGGATTTTTTGAGCAAGAGGATGTCTCGGAGAGGAAGATAAGATTTACGTCAAACCATTCACCAAAAGATTTGACCGAGAAGATTGAGGACATTGTAATAGAGATGGGATATAGAGTTCAGAAGAAAAATGGAAAATTGAAAGTGATACAAGAGGATAAAGCTCAAAAAAGCCTAGGAAGCCTCTCAGTTGCAGCAGAGGTTTTTGAAGTTGGTCCATCTTTGTATGTAGTAGAACTAAGGAAGTCTTATGGAGATGCTTCTGTATATAGACAATTATGCAAAAGGTTATCGAACGACTTGGGTATAGCCGAGGCGGGGGCAGAGCTAGTAAGCTCAGAAAGCCTAGACATATGA

Protein sequence

>MsaT008377.1

MVIINQARRIEGKVVQLGKYELGKTLGEGNFGKVKLARDTDCGNYFAVKILEKNKIVDLNNTDQIKREISTLKLLKHPNVVRLYEVLASKTKIYMVLEYVNGGELFDKISSKGKLIEAHGRKMFQQLIDGVSYCHNKGVFHRDLKLENVLVDAKGNIKITDFNLSALPQHCRADGLLHTTCGSPNYVAPEILANRGYDGAKSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKADVQIPRWLSPGAQNIIKKILDPNPKTRVTMDMIKEDEWFKEGYNPANLEDEEEEEEEDVYTDDEAFSIHEVSLEGDQSPKSPALINAFQLIGMSSCLDLSGFFEQEDVSERKIRFTSNHSPKDLTEKIEDIVIEMGYRVQKKNGKLKVIQEDKAQKSLGSLSVAAEVFEVGPSLYVVELRKSYGDASVYRQLCKRLSNDLGIAEAGAELVSSESLDI*