AlfalfaGEDB | MsaG008381

M. sativa ssp. caerulea / MsaG008381

KEGG: K09060
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF00170.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008381	XP_039686054.1	87.903	124	15	0	1	124	122	245	7.18e-71	222

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008381	sp\|Q99091\|CPRF3_PETCR	41.667	84	47	1	37	118	192	275	3.69e-15	72.8

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008381	G7IST9	87.903	124	15	0	1	124	158	281	8.59e-71	222

TFs/TRs:

Gene ID	Type	Classification
MsaG008381	TF	bZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG008381	0.826780	4.005677e-54	1.058585e-51
MsaG000325	MsaG008381	0.834535	5.154670e-56	1.702820e-53
MsaG000408	MsaG008381	0.819597	1.869517e-52	4.067870e-50
MsaG000613	MsaG008381	0.827042	3.471308e-54	9.240910e-52
MsaG000648	MsaG008381	0.822186	4.771610e-53	1.112085e-50
MsaG001133	MsaG008381	0.803132	6.784426e-49	9.850197e-47
MsaG002481	MsaG008381	0.802433	9.445656e-49	1.349544e-46
MsaG003804	MsaG008381	0.800379	2.477493e-48	3.378521e-46
MsaG004280	MsaG008381	0.810992	1.498957e-50	2.622444e-48
MsaG004654	MsaG008381	0.800099	2.822481e-48	3.824685e-46
MsaG004887	MsaG008381	0.800146	2.761307e-48	3.745747e-46
MsaG005728	MsaG008381	0.824818	1.164452e-53	2.914647e-51
MsaG006240	MsaG008381	0.802986	7.271806e-49	1.052220e-46
MsaG007734	MsaG008381	0.817628	5.202559e-52	1.075493e-49
MsaG008381	MsaG008511	0.808196	5.935796e-50	9.705406e-48
MsaG008381	MsaG009117	0.831147	3.547465e-55	1.060970e-52
MsaG008381	MsaG010637	0.818481	3.343610e-52	7.066180e-50
MsaG008381	MsaG011481	0.853807	3.604613e-61	2.231688e-58
MsaG008381	MsaG011812	0.812415	7.371147e-51	1.335547e-48
MsaG008381	MsaG012046	0.848117	1.422462e-59	7.231814e-57
MsaG008381	MsaG013974	0.800118	2.798551e-48	3.793800e-46
MsaG008381	MsaG015829	0.804311	3.872182e-49	5.777514e-47
MsaG008381	MsaG016695	0.823947	1.861619e-53	4.550386e-51
MsaG008381	MsaG016974	0.802154	1.077436e-48	1.529536e-46
MsaG008381	MsaG017183	0.808336	5.544151e-50	9.095375e-48
MsaG008381	MsaG017219	0.818047	4.187390e-52	8.750747e-50
MsaG008381	MsaG017290	0.830194	6.056822e-55	1.762635e-52
MsaG008381	MsaG017483	0.816823	7.877522e-52	1.595099e-49
MsaG008381	MsaG018082	0.807615	7.881010e-50	1.270678e-47
MsaG008381	MsaG018598	0.837176	1.111467e-56	3.974913e-54
MsaG008381	MsaG018641	0.805428	2.268999e-49	3.474190e-47
MsaG008381	MsaG019183	0.855797	9.602578e-62	6.384972e-59
MsaG008381	MsaG019188	0.842802	3.855478e-58	1.645052e-55
MsaG008381	MsaG019806	0.808011	6.495977e-50	1.057438e-47
MsaG008381	MsaG020732	0.806314	1.480283e-49	2.314447e-47
MsaG008381	MsaG020716	0.819658	1.810412e-52	3.945612e-50
MsaG008381	MsaG020834	0.815662	1.427668e-51	2.806517e-49
MsaG008381	MsaG020981	0.826957	3.636023e-54	9.656816e-52
MsaG008381	MsaG021395	0.830198	6.042381e-55	1.758675e-52
MsaG008381	MsaG021650	0.813694	3.875943e-51	7.250703e-49
MsaG008381	MsaG021720	0.802110	1.100086e-48	1.560091e-46
MsaG008381	MsaG022325	0.800807	2.028404e-48	2.792981e-46
MsaG008381	MsaG022627	0.820415	1.216963e-52	2.706205e-50
MsaG008381	MsaG023268	0.819687	1.783529e-52	3.890016e-50
MsaG008381	MsaG023796	0.833027	1.223284e-55	3.864589e-53
MsaG008381	MsaG026961	0.831294	3.266086e-55	9.809444e-53
MsaG008381	MsaG027505	0.808917	4.171613e-50	6.940344e-48
MsaG008381	MsaG027557	0.836473	1.676917e-56	5.871030e-54
MsaG008381	MsaG027590	0.815549	1.512922e-51	2.965494e-49
MsaG008381	MsaG027725	0.819339	2.139402e-52	4.624240e-50
MsaG008381	MsaG027845	0.820148	1.400126e-52	3.091636e-50
MsaG008381	MsaG028628	0.805746	1.946448e-49	3.002658e-47
MsaG008381	MsaG028802	0.824332	1.513250e-53	3.738012e-51
MsaG008381	MsaG028844	0.812805	6.063693e-51	1.109366e-48
MsaG008381	MsaG029035	0.819513	1.952578e-52	4.239498e-50
MsaG008381	MsaG029063	0.827006	3.539247e-54	9.412308e-52
MsaG008381	MsaG029147	0.803399	5.977870e-49	8.732707e-47
MsaG008381	MsaG030196	0.826025	6.048648e-54	1.565352e-51
MsaG008381	MsaG031494	0.822266	4.573469e-53	1.068199e-50
MsaG008381	MsaG032491	0.817221	6.416885e-52	1.312800e-49
MsaG008381	MsaG034853	0.809177	3.671916e-50	6.147186e-48
MsaG008381	MsaG039573	0.838956	3.892872e-57	1.470876e-54
MsaG008381	MsaG040027	0.800480	2.363683e-48	3.230661e-46
MsaG008381	MsaG040728	0.826392	4.952260e-54	1.294743e-51
MsaG008381	MsaG040850	0.834423	5.497352e-56	1.810018e-53
MsaG008381	MsaG042102	0.826485	4.708348e-54	1.234171e-51
MsaG008381	MsaG044546	0.803084	6.940595e-49	1.006575e-46
MsaG008381	MsaG044855	0.803918	4.670614e-49	6.905500e-47
MsaG008381	MsaG045510	0.813502	4.271343e-51	7.951803e-49
MsaG008381	MsaG045822	0.817324	6.087452e-52	1.248659e-49
MsaG008381	MsaG046054	0.858695	1.350776e-62	9.995467e-60
MsaG008381	MsaG046540	0.810665	1.762908e-50	3.059679e-48
MsaG008381	MsaG046660	0.843944	1.916964e-58	8.483985e-56
MsaG008381	MsaG046780	0.800459	2.386453e-48	3.260286e-46
MsaG008381	MsaG001966	0.814434	2.666860e-51	5.082403e-49
MsaG008381	MsaG002578	0.803357	6.100044e-49	8.902495e-47
MsaG008381	MsaG014406	0.827720	2.390630e-54	6.486444e-52
MsaG008381	MsaG013859	0.816767	8.107145e-52	1.639267e-49
MsaG008381	MsaG014017	0.803626	5.367049e-49	7.881487e-47
MsaG008381	MsaG011821	0.803403	5.966463e-49	8.716931e-47
MsaG008381	MsaG027840	0.813650	3.963811e-51	7.406759e-49
MsaG008381	MsaG032991	0.820214	1.352424e-52	2.991565e-50
MsaG008381	MsaG032664	0.824544	1.350117e-53	3.354260e-51
MsaG008381	MsaG037725	0.802288	1.011492e-48	1.440385e-46
MsaG008381	MsaG036408	0.820414	1.217696e-52	2.707736e-50
MsaG008381	MsaG037728	0.802773	8.045382e-49	1.158416e-46
MsaG008381	MsaG043116	0.802472	9.273122e-49	1.326083e-46
MsaG008381	MsaG043656	0.815273	1.741169e-51	3.389208e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008381	MtrunA17_Chr1g0162721	76.800	125	28	1	1	124	183	307	1.49e-58	182
MsaG008381	MtrunA17_Chr2g0302481	54.839	124	30	2	1	124	91	188	3.19e-35	119
MsaG008381	MtrunA17_Chr4g0065261	59.551	89	35	1	36	124	88	175	2.64e-26	96.7
MsaG008381	MtrunA17_Chr8g0373571	43.182	88	50	0	31	118	252	339	1.46e-15	71.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008381	AT4G36730.2	40.964	83	47	1	38	118	217	299	2.69e-12	62.4
MsaG008381	AT4G36730.1	40.964	83	47	1	38	118	219	301	2.99e-12	62.0
MsaG008381	AT2G35530.1	39.437	71	43	0	36	106	302	372	2.18e-11	60.1

Find 18 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCTGGGATGGCTCAGAATT+TGG	0.139505	2:-33442358	MsaT008381.1:CDS
CACTCTTAAGGATGAAAATT+TGG	0.215284	2:-33441861	MsaT008381.1:CDS
TCTGGGATGGCTCAGAATTT+GGG	0.322428	2:-33442357	MsaT008381.1:CDS
GCTCAGCGAGCGTTTGTGTT+AGG	0.327287	2:+33441837	None:intergenic
TTCTTTGTAGAAAATCCATC+TGG	0.371434	2:-33442375	MsaT008381.1:intron
GAAGAGCTCGTTAAGGAGTA+TGG	0.378867	2:-33441342	MsaT008381.1:CDS
TCAAAAGATAAACACTCTTA+AGG	0.422261	2:-33441873	MsaT008381.1:CDS
AAGATCAAAGATAAAGAAAC+AGG	0.437513	2:-33442073	MsaT008381.1:intron
AATAGATCCGCAATTGATTC+TGG	0.439062	2:+33441318	None:intergenic
CAATGAAAACGATTCTATTG+AGG	0.546332	2:-33441789	MsaT008381.1:intron
GGAACAGGAAGAGCTCGTTA+AGG	0.581436	2:-33441349	MsaT008381.1:intron
AAATTCTGAGCCATCCCAGA+TGG	0.581446	2:+33442360	None:intergenic
TCTAACATGATTATTAGTGA+TGG	0.585817	2:-33442533	None:intergenic
CTGGGATGGCTCAGAATTTG+GGG	0.588703	2:-33442356	MsaT008381.1:CDS
TGTAGAAAATCCATCTGGGA+TGG	0.598950	2:-33442370	MsaT008381.1:intron
TCTTTGTAGAAAATCCATCT+GGG	0.602431	2:-33442374	MsaT008381.1:intron
GAATTTGGGGACAGTCGTCA+AGG	0.625862	2:-33442343	MsaT008381.1:CDS
GTATGGACCAGAATCAATTG+CGG	0.711023	2:-33441325	MsaT008381.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	33441299	33442549	33441299	ID=MsaG008381
Chr2	mRNA	33441299	33442549	33441299	ID=MsaT008381.1;Parent=MsaG008381
Chr2	exon	33441299	33441364	33441299	ID=MsaT008381.1.exon5;Parent=MsaT008381.1
Chr2	CDS	33441299	33441364	33441299	ID=cds.MsaT008381.1;Parent=MsaT008381.1
Chr2	exon	33441790	33441915	33441790	ID=MsaT008381.1.exon4;Parent=MsaT008381.1
Chr2	CDS	33441790	33441915	33441790	ID=cds.MsaT008381.1;Parent=MsaT008381.1
Chr2	exon	33442074	33442151	33442074	ID=MsaT008381.1.exon3;Parent=MsaT008381.1
Chr2	CDS	33442074	33442151	33442074	ID=cds.MsaT008381.1;Parent=MsaT008381.1
Chr2	exon	33442299	33442387	33442299	ID=MsaT008381.1.exon2;Parent=MsaT008381.1
Chr2	CDS	33442299	33442387	33442299	ID=cds.MsaT008381.1;Parent=MsaT008381.1
Chr2	exon	33442534	33442549	33442534	ID=MsaT008381.1.exon1;Parent=MsaT008381.1
Chr2	CDS	33442534	33442549	33442534	ID=cds.MsaT008381.1;Parent=MsaT008381.1

Gene Sequence	>MsaT008381.1 ATGATTATTAGTGATGAAAATCCATCTGGGATGGCTCAGAATTTGGGGACAGTCGTCAAGGAATCAGACACTGACATTGATGTTGATGCTCAACTAAAAAATGTGGAAGATGATGAAAGAAGAAAAGAAAGAAAAAGACTGTCAAACAGGAAATCAGCTCAAAGATCAAAGATAAAGAAACAGAAAGAATATGAAGAGCAATGTCAAAAGATAAACACTCTTAAGGATGAAAATTTGGTCCTAACACAAACGCTCGCTGAGCTTTCAGAGAAATGTCTCGAGCTCACCAATGAAAACGATTCTATTGAGGAAGAGCTCGTTAAGGAGTATGGACCAGAATCAATTGCGGATCTATTGCATATGAATCCTACTTGA
Protein sequence	>MsaT008381.1 MIISDENPSGMAQNLGTVVKESDTDIDVDAQLKNVEDDERRKERKRLSNRKSAQRSKIKKQKEYEEQCQKINTLKDENLVLTQTLAELSEKCLELTNENDSIEEELVKEYGPESIADLLHMNPT*